data_8AU3 # _model_server_result.job_id hClFMJC5LU4PYxjGY56ajA _model_server_result.datetime_utc '2024-12-28 08:33:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8au3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1401}' # _entry.id 8AU3 # _exptl.entry_id 8AU3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 492.572 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-[1-(3-{5-[(1-methylpiperidin-4-yl)methoxy]pyrimidin-2-yl}benzyl)-6-oxo-1,6-dihydropyridazin-3-yl]benzonitrile _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8AU3 _cell.length_a 116.676 _cell.length_b 139.12 _cell.length_c 240.116 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8AU3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 22 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'F 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,G 1 1 B,D,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C29 H28 N6 O2' _chem_comp.formula_weight 492.572 _chem_comp.id 3E8 _chem_comp.mon_nstd_flag . _chem_comp.name 3-[1-(3-{5-[(1-methylpiperidin-4-yl)methoxy]pyrimidin-2-yl}benzyl)-6-oxo-1,6-dihydropyridazin-3-yl]benzonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C30 C32 3E8 sing 1 n n C30 C29 3E8 sing 2 n n C32 N34 3E8 sing 3 n n O26 C25 3E8 sing 4 n n O26 C28 3E8 sing 5 n n C24 C25 3E8 doub 6 n y C24 N22 3E8 sing 7 n y C25 C23 3E8 sing 8 n y N22 C20 3E8 doub 9 n y C28 C29 3E8 sing 10 n n C23 N21 3E8 doub 11 n y C29 C31 3E8 sing 12 n n C20 N21 3E8 sing 13 n y C20 C18 3E8 sing 14 n n C16 C18 3E8 doub 15 n y C16 C14 3E8 sing 16 n y C18 C19 3E8 sing 17 n y N34 C35 3E8 sing 18 n n N34 C33 3E8 sing 19 n n C13 C14 3E8 sing 20 n n C13 N11 3E8 sing 21 n n C5 C3 3E8 doub 22 n y C5 C6 3E8 sing 23 n y C14 C15 3E8 doub 24 n y C3 C1 3E8 sing 25 n y C19 C17 3E8 doub 26 n y C6 C4 3E8 doub 27 n y C31 C33 3E8 sing 28 n n C15 C17 3E8 sing 29 n y N9 N11 3E8 sing 30 n n N9 C7 3E8 doub 31 n n N11 C12 3E8 sing 32 n n C1 C7 3E8 sing 33 n n C1 C2 3E8 doub 34 n y C4 C2 3E8 sing 35 n y C4 C36 3E8 sing 36 n n C7 C8 3E8 sing 37 n n C36 N37 3E8 trip 38 n n C12 O27 3E8 doub 39 n n C12 C10 3E8 sing 40 n n C8 C10 3E8 doub 41 n n C2 H1 3E8 sing 42 n n C3 H2 3E8 sing 43 n n C5 H3 3E8 sing 44 n n C6 H4 3E8 sing 45 n n C8 H5 3E8 sing 46 n n C15 H6 3E8 sing 47 n n C16 H7 3E8 sing 48 n n C17 H8 3E8 sing 49 n n C19 H9 3E8 sing 50 n n C23 H10 3E8 sing 51 n n C24 H11 3E8 sing 52 n n C30 H12 3E8 sing 53 n n C30 H13 3E8 sing 54 n n C31 H14 3E8 sing 55 n n C31 H15 3E8 sing 56 n n C32 H16 3E8 sing 57 n n C32 H17 3E8 sing 58 n n C33 H18 3E8 sing 59 n n C33 H19 3E8 sing 60 n n C35 H20 3E8 sing 61 n n C35 H21 3E8 sing 62 n n C35 H22 3E8 sing 63 n n C10 H23 3E8 sing 64 n n C13 H24 3E8 sing 65 n n C13 H25 3E8 sing 66 n n C28 H26 3E8 sing 67 n n C28 H27 3E8 sing 68 n n C29 H28 3E8 sing 69 n n # _atom_sites.entry_id 8AU3 _atom_sites.fract_transf_matrix[1][1] 0.008571 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007188 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004165 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 3E8 A 1 1401 1 3E8 INX . D 2 3E8 B 1 1401 2 3E8 INX . E 3 PG4 B 1 1402 1 PG4 PG4 . F 4 PEG B 1 1403 2 PEG PEG . G 5 HOH A 1 1501 42 HOH HOH . G 5 HOH A 2 1502 20 HOH HOH . G 5 HOH A 3 1503 25 HOH HOH . G 5 HOH A 4 1504 11 HOH HOH . G 5 HOH A 5 1505 83 HOH HOH . G 5 HOH A 6 1506 4 HOH HOH . G 5 HOH A 7 1507 16 HOH HOH . G 5 HOH A 8 1508 21 HOH HOH . G 5 HOH A 9 1509 2 HOH HOH . G 5 HOH A 10 1510 9 HOH HOH . G 5 HOH A 11 1511 71 HOH HOH . G 5 HOH A 12 1512 29 HOH HOH . G 5 HOH A 13 1513 79 HOH HOH . G 5 HOH A 14 1514 7 HOH HOH . G 5 HOH A 15 1515 91 HOH HOH . G 5 HOH A 16 1516 82 HOH HOH . G 5 HOH A 17 1517 43 HOH HOH . G 5 HOH A 18 1518 87 HOH HOH . G 5 HOH A 19 1519 93 HOH HOH . G 5 HOH A 20 1520 45 HOH HOH . G 5 HOH A 21 1521 94 HOH HOH . G 5 HOH A 22 1522 44 HOH HOH . G 5 HOH A 23 1523 8 HOH HOH . G 5 HOH A 24 1524 49 HOH HOH . G 5 HOH A 25 1525 80 HOH HOH . G 5 HOH A 26 1526 81 HOH HOH . G 5 HOH A 27 1527 40 HOH HOH . G 5 HOH A 28 1528 98 HOH HOH . G 5 HOH A 29 1529 6 HOH HOH . G 5 HOH A 30 1530 89 HOH HOH . G 5 HOH A 31 1531 51 HOH HOH . G 5 HOH A 32 1532 84 HOH HOH . G 5 HOH A 33 1533 56 HOH HOH . G 5 HOH A 34 1534 78 HOH HOH . G 5 HOH A 35 1535 92 HOH HOH . G 5 HOH A 36 1536 26 HOH HOH . G 5 HOH A 37 1537 85 HOH HOH . G 5 HOH A 38 1538 86 HOH HOH . G 5 HOH A 39 1539 53 HOH HOH . G 5 HOH A 40 1540 102 HOH HOH . G 5 HOH A 41 1541 90 HOH HOH . G 5 HOH A 42 1542 59 HOH HOH . G 5 HOH A 43 1543 55 HOH HOH . G 5 HOH A 44 1544 58 HOH HOH . G 5 HOH A 45 1545 88 HOH HOH . H 5 HOH B 1 1501 15 HOH HOH . H 5 HOH B 2 1502 69 HOH HOH . H 5 HOH B 3 1503 46 HOH HOH . H 5 HOH B 4 1504 68 HOH HOH . H 5 HOH B 5 1505 38 HOH HOH . H 5 HOH B 6 1506 73 HOH HOH . H 5 HOH B 7 1507 35 HOH HOH . H 5 HOH B 8 1508 96 HOH HOH . H 5 HOH B 9 1509 19 HOH HOH . H 5 HOH B 10 1510 12 HOH HOH . H 5 HOH B 11 1511 50 HOH HOH . H 5 HOH B 12 1512 13 HOH HOH . H 5 HOH B 13 1513 34 HOH HOH . H 5 HOH B 14 1514 5 HOH HOH . H 5 HOH B 15 1515 3 HOH HOH . H 5 HOH B 16 1516 70 HOH HOH . H 5 HOH B 17 1517 100 HOH HOH . H 5 HOH B 18 1518 24 HOH HOH . H 5 HOH B 19 1519 37 HOH HOH . H 5 HOH B 20 1520 66 HOH HOH . H 5 HOH B 21 1521 41 HOH HOH . H 5 HOH B 22 1522 47 HOH HOH . H 5 HOH B 23 1523 22 HOH HOH . H 5 HOH B 24 1524 52 HOH HOH . H 5 HOH B 25 1525 65 HOH HOH . H 5 HOH B 26 1526 75 HOH HOH . H 5 HOH B 27 1527 60 HOH HOH . H 5 HOH B 28 1528 63 HOH HOH . H 5 HOH B 29 1529 74 HOH HOH . H 5 HOH B 30 1530 67 HOH HOH . H 5 HOH B 31 1531 95 HOH HOH . H 5 HOH B 32 1532 72 HOH HOH . H 5 HOH B 33 1533 64 HOH HOH . H 5 HOH B 34 1534 54 HOH HOH . H 5 HOH B 35 1535 101 HOH HOH . H 5 HOH B 36 1536 97 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 3E8 . . . D 2 36.63 -9.511 36.587 1 40.08 ? C1 3E8 1401 B 1 HETATM 2 C C2 3E8 . . . D 2 37.254 -10.052 35.444 1 44.72 ? C2 3E8 1401 B 1 HETATM 3 C C3 3E8 . . . D 2 37.238 -9.759 37.845 1 45.03 ? C3 3E8 1401 B 1 HETATM 4 C C4 3E8 . . . D 2 38.446 -10.796 35.551 1 51.43 ? C4 3E8 1401 B 1 HETATM 5 C C5 3E8 . . . D 2 38.414 -10.497 37.943 1 54.19 ? C5 3E8 1401 B 1 HETATM 6 C C6 3E8 . . . D 2 39.023 -11.019 36.808 1 49.58 ? C6 3E8 1401 B 1 HETATM 7 C C7 3E8 . . . D 2 35.358 -8.717 36.509 1 42.69 ? C7 3E8 1401 B 1 HETATM 8 C C8 3E8 . . . D 2 34.474 -8.723 35.388 1 42.23 ? C8 3E8 1401 B 1 HETATM 9 C C12 3E8 . . . D 2 33.025 -7.212 36.604 1 44.54 ? C12 3E8 1401 B 1 HETATM 10 C C15 3E8 . . . D 2 31.913 -7.561 40.371 1 43.38 ? C15 3E8 1401 B 1 HETATM 11 C C16 3E8 . . . D 2 34.155 -8.403 40.525 1 41.06 ? C16 3E8 1401 B 1 HETATM 12 C C17 3E8 . . . D 2 31.502 -8.492 41.321 1 42.66 ? C17 3E8 1401 B 1 HETATM 13 C C18 3E8 . . . D 2 33.771 -9.331 41.519 1 43.01 ? C18 3E8 1401 B 1 HETATM 14 C C19 3E8 . . . D 2 32.41 -9.385 41.878 1 44.25 ? C19 3E8 1401 B 1 HETATM 15 N N22 3E8 . . . D 2 35.912 -10.501 41.395 1 49.73 ? N22 3E8 1401 B 1 HETATM 16 C C23 3E8 . . . D 2 35.274 -12.146 43.431 1 50.94 ? C23 3E8 1401 B 1 HETATM 17 C C24 3E8 . . . D 2 36.803 -11.422 41.741 1 52.23 ? C24 3E8 1401 B 1 HETATM 18 O O26 3E8 . . . D 2 37.477 -13.223 43.089 1 53.48 ? O26 3E8 1401 B 1 HETATM 19 C C30 3E8 . . . D 2 38.226 -15.96 42.492 1 71.22 ? C30 3E8 1401 B 1 HETATM 20 C C31 3E8 . . . D 2 39.822 -14.833 44.073 1 73.75 ? C31 3E8 1401 B 1 HETATM 21 C C32 3E8 . . . D 2 39.223 -17.115 42.341 1 78.13 ? C32 3E8 1401 B 1 HETATM 22 C C33 3E8 . . . D 2 40.798 -15.999 43.85 1 74.68 ? C33 3E8 1401 B 1 HETATM 23 C C35 3E8 . . . D 2 41.591 -17.645 42.262 1 84.87 ? C35 3E8 1401 B 1 HETATM 24 C C36 3E8 . . . D 2 39.078 -11.331 34.385 1 58.24 ? C36 3E8 1401 B 1 HETATM 25 N N37 3E8 . . . D 2 39.525 -11.729 33.418 1 66.2 ? N37 3E8 1401 B 1 HETATM 26 N N9 3E8 . . . D 2 34.991 -7.977 37.544 1 51.26 ? N9 3E8 1401 B 1 HETATM 27 N N11 3E8 . . . D 2 33.91 -7.257 37.648 1 50.75 ? N11 3E8 1401 B 1 HETATM 28 O O27 3E8 . . . D 2 32.003 -6.547 36.615 1 41.52 ? O27 3E8 1401 B 1 HETATM 29 C C10 3E8 . . . D 2 33.324 -7.971 35.436 1 42.45 ? C10 3E8 1401 B 1 HETATM 30 C C13 3E8 . . . D 2 33.72 -6.523 38.927 1 48.09 ? C13 3E8 1401 B 1 HETATM 31 C C14 3E8 . . . D 2 33.244 -7.515 39.969 1 44.05 ? C14 3E8 1401 B 1 HETATM 32 C C20 3E8 . . . D 2 34.742 -10.341 42.039 1 44.77 ? C20 3E8 1401 B 1 HETATM 33 C C25 3E8 . . . D 2 36.52 -12.306 42.786 1 50.25 ? C25 3E8 1401 B 1 HETATM 34 N N21 3E8 . . . D 2 34.422 -11.199 43.019 1 51.27 ? N21 3E8 1401 B 1 HETATM 35 C C28 3E8 . . . D 2 37.372 -14.206 44.126 1 65.41 ? C28 3E8 1401 B 1 HETATM 36 C C29 3E8 . . . D 2 38.381 -15.343 43.897 1 68.41 ? C29 3E8 1401 B 1 HETATM 37 N N34 3E8 . . . D 2 40.594 -16.598 42.516 1 78.61 ? N34 3E8 1401 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 449 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 37 #