data_8AU5 # _model_server_result.job_id bXhts-IFs1OqhP1QTB58Cw _model_server_result.datetime_utc '2024-12-28 09:11:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8au5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1401}' # _entry.id 8AU5 # _exptl.entry_id 8AU5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 492.572 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-[1-(3-{5-[(1-methylpiperidin-4-yl)methoxy]pyrimidin-2-yl}benzyl)-6-oxo-1,6-dihydropyridazin-3-yl]benzonitrile _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.67 _cell.angle_gamma 90 _cell.entry_id 8AU5 _cell.length_a 38.484 _cell.length_b 43.173 _cell.length_c 88.794 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8AU5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C29 H28 N6 O2' _chem_comp.formula_weight 492.572 _chem_comp.id 3E8 _chem_comp.mon_nstd_flag . _chem_comp.name 3-[1-(3-{5-[(1-methylpiperidin-4-yl)methoxy]pyrimidin-2-yl}benzyl)-6-oxo-1,6-dihydropyridazin-3-yl]benzonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C30 C32 3E8 sing 1 n n C30 C29 3E8 sing 2 n n C32 N34 3E8 sing 3 n n O26 C25 3E8 sing 4 n n O26 C28 3E8 sing 5 n n C24 C25 3E8 doub 6 n y C24 N22 3E8 sing 7 n y C25 C23 3E8 sing 8 n y N22 C20 3E8 doub 9 n y C28 C29 3E8 sing 10 n n C23 N21 3E8 doub 11 n y C29 C31 3E8 sing 12 n n C20 N21 3E8 sing 13 n y C20 C18 3E8 sing 14 n n C16 C18 3E8 doub 15 n y C16 C14 3E8 sing 16 n y C18 C19 3E8 sing 17 n y N34 C35 3E8 sing 18 n n N34 C33 3E8 sing 19 n n C13 C14 3E8 sing 20 n n C13 N11 3E8 sing 21 n n C5 C3 3E8 doub 22 n y C5 C6 3E8 sing 23 n y C14 C15 3E8 doub 24 n y C3 C1 3E8 sing 25 n y C19 C17 3E8 doub 26 n y C6 C4 3E8 doub 27 n y C31 C33 3E8 sing 28 n n C15 C17 3E8 sing 29 n y N9 N11 3E8 sing 30 n n N9 C7 3E8 doub 31 n n N11 C12 3E8 sing 32 n n C1 C7 3E8 sing 33 n n C1 C2 3E8 doub 34 n y C4 C2 3E8 sing 35 n y C4 C36 3E8 sing 36 n n C7 C8 3E8 sing 37 n n C36 N37 3E8 trip 38 n n C12 O27 3E8 doub 39 n n C12 C10 3E8 sing 40 n n C8 C10 3E8 doub 41 n n C2 H1 3E8 sing 42 n n C3 H2 3E8 sing 43 n n C5 H3 3E8 sing 44 n n C6 H4 3E8 sing 45 n n C8 H5 3E8 sing 46 n n C15 H6 3E8 sing 47 n n C16 H7 3E8 sing 48 n n C17 H8 3E8 sing 49 n n C19 H9 3E8 sing 50 n n C23 H10 3E8 sing 51 n n C24 H11 3E8 sing 52 n n C30 H12 3E8 sing 53 n n C30 H13 3E8 sing 54 n n C31 H14 3E8 sing 55 n n C31 H15 3E8 sing 56 n n C32 H16 3E8 sing 57 n n C32 H17 3E8 sing 58 n n C33 H18 3E8 sing 59 n n C33 H19 3E8 sing 60 n n C35 H20 3E8 sing 61 n n C35 H21 3E8 sing 62 n n C35 H22 3E8 sing 63 n n C10 H23 3E8 sing 64 n n C13 H24 3E8 sing 65 n n C13 H25 3E8 sing 66 n n C28 H26 3E8 sing 67 n n C28 H27 3E8 sing 68 n n C29 H28 3E8 sing 69 n n # _atom_sites.entry_id 8AU5 _atom_sites.fract_transf_matrix[1][1] 0.025985 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000756 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023163 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011267 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 3E8 A 1 1401 1 3E8 INX . C 3 EDO A 1 1402 1 EDO EDO . D 3 EDO A 1 1403 2 EDO EDO . E 4 CL A 1 1404 3 CL CL . F 3 EDO A 1 1405 4 EDO EDO . G 5 HOH A 1 1501 4 HOH HOH . G 5 HOH A 2 1502 3 HOH HOH . G 5 HOH A 3 1503 5 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 3E8 . . . B 2 18.268 -0.223 15.795 1 81.03 ? C1 3E8 1401 A 1 HETATM 2 C C2 3E8 . . . B 2 18.437 -1.493 16.371 1 84.15 ? C2 3E8 1401 A 1 HETATM 3 C C3 3E8 . . . B 2 19.279 0.263 14.935 1 82.35 ? C3 3E8 1401 A 1 HETATM 4 C C4 3E8 . . . B 2 19.575 -2.259 16.077 1 86.52 ? C4 3E8 1401 A 1 HETATM 5 C C5 3E8 . . . B 2 20.405 -0.497 14.653 1 84.98 ? C5 3E8 1401 A 1 HETATM 6 C C6 3E8 . . . B 2 20.561 -1.753 15.218 1 86.91 ? C6 3E8 1401 A 1 HETATM 7 C C7 3E8 . . . B 2 17.069 0.63 16.083 1 73.75 ? C7 3E8 1401 A 1 HETATM 8 C C8 3E8 . . . B 2 16.306 0.513 17.276 1 72.05 ? C8 3E8 1401 A 1 HETATM 9 C C12 3E8 . . . B 2 14.927 2.3 16.457 1 64.16 ? C12 3E8 1401 A 1 HETATM 10 C C15 3E8 . . . B 2 16.137 5.673 14.804 1 58.14 ? C15 3E8 1401 A 1 HETATM 11 C C16 3E8 . . . B 2 17.837 4.148 14.053 1 54.06 ? C16 3E8 1401 A 1 HETATM 12 C C17 3E8 . . . B 2 17.09 6.676 14.927 1 54.35 ? C17 3E8 1401 A 1 HETATM 13 C C18 3E8 . . . B 2 18.811 5.153 14.165 1 55.56 ? C18 3E8 1401 A 1 HETATM 14 C C19 3E8 . . . B 2 18.413 6.426 14.616 1 53.55 ? C19 3E8 1401 A 1 HETATM 15 N N22 3E8 . . . B 2 21.115 5.872 13.83 1 59.55 ? N22 3E8 1401 A 1 HETATM 16 C C23 3E8 . . . B 2 21.941 3.335 13.414 1 62.67 ? C23 3E8 1401 A 1 HETATM 17 C C24 3E8 . . . B 2 22.399 5.676 13.575 1 67.73 ? C24 3E8 1401 A 1 HETATM 18 O O26 3E8 . . . B 2 24.192 4.155 13.104 1 74.74 ? O26 3E8 1401 A 1 HETATM 19 C C30 3E8 . . . B 2 27.071 3.662 12.616 1 81.28 ? C30 3E8 1401 A 1 HETATM 20 C C31 3E8 . . . B 2 26.03 2.267 14.407 1 83.76 ? C31 3E8 1401 A 1 HETATM 21 C C32 3E8 . . . B 2 28.276 2.713 12.643 1 81.98 ? C32 3E8 1401 A 1 HETATM 22 C C33 3E8 . . . B 2 27.284 1.39 14.432 1 84.29 ? C33 3E8 1401 A 1 HETATM 23 C C35 3E8 . . . B 2 28.98 0.408 13.021 1 84.65 ? C35 3E8 1401 A 1 HETATM 24 C C36 3E8 . . . B 2 19.739 -3.554 16.66 1 90.27 ? C36 3E8 1401 A 1 HETATM 25 N N37 3E8 . . . B 2 19.9 -4.587 17.108 1 93.48 ? N37 3E8 1401 A 1 HETATM 26 N N9 3E8 . . . B 2 16.702 1.543 15.211 1 69.41 ? N9 3E8 1401 A 1 HETATM 27 N N11 3E8 . . . B 2 15.704 2.352 15.348 1 62.75 ? N11 3E8 1401 A 1 HETATM 28 O O27 3E8 . . . B 2 13.976 3.041 16.625 1 65.95 ? O27 3E8 1401 A 1 HETATM 29 C C10 3E8 . . . B 2 15.233 1.346 17.461 1 68.61 ? C10 3E8 1401 A 1 HETATM 30 C C13 3E8 . . . B 2 15.473 3.315 14.252 1 61.68 ? C13 3E8 1401 A 1 HETATM 31 C C14 3E8 . . . B 2 16.509 4.409 14.367 1 57.71 ? C14 3E8 1401 A 1 HETATM 32 C C20 3E8 . . . B 2 20.246 4.868 13.857 1 55.08 ? C20 3E8 1401 A 1 HETATM 33 C C25 3E8 . . . B 2 22.872 4.38 13.366 1 68.48 ? C25 3E8 1401 A 1 HETATM 34 N N21 3E8 . . . B 2 20.668 3.616 13.666 1 56.04 ? N21 3E8 1401 A 1 HETATM 35 C C28 3E8 . . . B 2 25.189 4.617 14.026 1 78.12 ? C28 3E8 1401 A 1 HETATM 36 C C29 3E8 . . . B 2 26.423 3.698 14.009 1 81.83 ? C29 3E8 1401 A 1 HETATM 37 N N34 3E8 . . . B 2 27.867 1.366 13.085 1 83.93 ? N34 3E8 1401 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 37 #