data_8AVH
#
_model_server_result.job_id            CKIyVB-H-dgAyntGNOM78Q 
_model_server_result.datetime_utc      '2024-12-27 16:43:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8avh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":201}' 
#
_entry.id    8AVH 
#
_exptl.entry_id    8AVH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              76.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,3-PROPANDIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8AVH 
_cell.length_a            46.407 
_cell.length_b            48.859 
_cell.length_c            101.704 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 8AVH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    'P 2ac 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 21' 
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_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
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_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
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_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C3 H8 O2' 
_chem_comp.formula_weight    76.094 
_chem_comp.id                PDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,3-PROPANDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 PDO sing 224 n n 
C1 C2 PDO sing 225 n n 
C1 H11 PDO sing 226 n n 
C1 H12 PDO sing 227 n n 
O1 HO1 PDO sing 228 n n 
C2 C3 PDO sing 229 n n 
C2 H21 PDO sing 230 n n 
C2 H22 PDO sing 231 n n 
C3 O3 PDO sing 232 n n 
C3 H31 PDO sing 233 n n 
C3 H32 PDO sing 234 n n 
O3 HO3 PDO sing 235 n n 
#
_atom_sites.entry_id                     8AVH 
_atom_sites.fract_transf_matrix[1][1]    0.021548 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.020467 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009832 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 PDO B 1 201 201 PDO PDO . 
D 3 HOH A 1 201 28 HOH HOH . 
D 3 HOH A 2 202 57 HOH HOH . 
D 3 HOH A 3 203 58 HOH HOH . 
D 3 HOH A 4 204 4 HOH HOH . 
D 3 HOH A 5 205 33 HOH HOH . 
D 3 HOH A 6 206 40 HOH HOH . 
D 3 HOH A 7 207 48 HOH HOH . 
D 3 HOH A 8 208 26 HOH HOH . 
D 3 HOH A 9 209 5 HOH HOH . 
D 3 HOH A 10 210 12 HOH HOH . 
D 3 HOH A 11 211 43 HOH HOH . 
D 3 HOH A 12 212 23 HOH HOH . 
D 3 HOH A 13 213 42 HOH HOH . 
D 3 HOH A 14 214 18 HOH HOH . 
D 3 HOH A 15 215 9 HOH HOH . 
D 3 HOH A 16 216 31 HOH HOH . 
D 3 HOH A 17 217 65 HOH HOH . 
D 3 HOH A 18 218 34 HOH HOH . 
D 3 HOH A 19 219 82 HOH HOH . 
D 3 HOH A 20 220 3 HOH HOH . 
D 3 HOH A 21 221 22 HOH HOH . 
D 3 HOH A 22 222 53 HOH HOH . 
D 3 HOH A 23 223 19 HOH HOH . 
D 3 HOH A 24 224 50 HOH HOH . 
D 3 HOH A 25 225 35 HOH HOH . 
D 3 HOH A 26 226 44 HOH HOH . 
D 3 HOH A 27 227 56 HOH HOH . 
D 3 HOH A 28 228 32 HOH HOH . 
D 3 HOH A 29 229 62 HOH HOH . 
D 3 HOH A 30 230 41 HOH HOH . 
D 3 HOH A 31 231 15 HOH HOH . 
D 3 HOH A 32 232 39 HOH HOH . 
D 3 HOH A 33 233 72 HOH HOH . 
D 3 HOH A 34 234 76 HOH HOH . 
D 3 HOH A 35 235 68 HOH HOH . 
D 3 HOH A 36 236 66 HOH HOH . 
D 3 HOH A 37 237 74 HOH HOH . 
D 3 HOH A 38 238 20 HOH HOH . 
D 3 HOH A 39 239 63 HOH HOH . 
D 3 HOH A 40 240 25 HOH HOH . 
D 3 HOH A 41 241 77 HOH HOH . 
D 3 HOH A 42 242 69 HOH HOH . 
E 3 HOH B 1 301 27 HOH HOH . 
E 3 HOH B 2 302 78 HOH HOH . 
E 3 HOH B 3 303 14 HOH HOH . 
E 3 HOH B 4 304 17 HOH HOH . 
E 3 HOH B 5 305 6 HOH HOH . 
E 3 HOH B 6 306 24 HOH HOH . 
E 3 HOH B 7 307 61 HOH HOH . 
E 3 HOH B 8 308 7 HOH HOH . 
E 3 HOH B 9 309 75 HOH HOH . 
E 3 HOH B 10 310 55 HOH HOH . 
E 3 HOH B 11 311 11 HOH HOH . 
E 3 HOH B 12 312 70 HOH HOH . 
E 3 HOH B 13 313 47 HOH HOH . 
E 3 HOH B 14 314 8 HOH HOH . 
E 3 HOH B 15 315 49 HOH HOH . 
E 3 HOH B 16 316 10 HOH HOH . 
E 3 HOH B 17 317 2 HOH HOH . 
E 3 HOH B 18 318 45 HOH HOH . 
E 3 HOH B 19 319 71 HOH HOH . 
E 3 HOH B 20 320 29 HOH HOH . 
E 3 HOH B 21 321 54 HOH HOH . 
E 3 HOH B 22 322 36 HOH HOH . 
E 3 HOH B 23 323 73 HOH HOH . 
E 3 HOH B 24 324 60 HOH HOH . 
E 3 HOH B 25 325 46 HOH HOH . 
E 3 HOH B 26 326 64 HOH HOH . 
E 3 HOH B 27 327 38 HOH HOH . 
E 3 HOH B 28 328 51 HOH HOH . 
E 3 HOH B 29 329 67 HOH HOH . 
E 3 HOH B 30 330 37 HOH HOH . 
E 3 HOH B 31 331 59 HOH HOH . 
E 3 HOH B 32 332 30 HOH HOH . 
E 3 HOH B 33 333 1 HOH HOH . 
E 3 HOH B 34 334 16 HOH HOH . 
E 3 HOH B 35 335 81 HOH HOH . 
E 3 HOH B 36 336 21 HOH HOH . 
E 3 HOH B 37 337 52 HOH HOH . 
E 3 HOH B 38 338 13 HOH HOH . 
E 3 HOH B 39 339 80 HOH HOH . 
E 3 HOH B 40 340 79 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PDO . . . C 2 21.749 -7.433 -14.931 1 56.08 ? C1 PDO 201 B 1 
HETATM 2 O O1 PDO . . . C 2 22.518 -6.252 -15.007 1 56.49 ? O1 PDO 201 B 1 
HETATM 3 C C2 PDO . . . C 2 20.742 -7.441 -16.068 1 54.68 ? C2 PDO 201 B 1 
HETATM 4 C C3 PDO . . . C 2 19.788 -6.255 -16.007 1 53.65 ? C3 PDO 201 B 1 
HETATM 5 O O3 PDO . . . C 2 18.48 -6.681 -16.368 1 60.47 ? O3 PDO 201 B 1 
#
_model_server_stats.io_time_ms              116 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           302 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           5 
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