data_8AVY # _model_server_result.job_id SaLivrAZdDZT3K-2VnN59A _model_server_result.datetime_utc '2024-10-20 20:38:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8avy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":2006}' # _entry.id 8AVY # _exptl.entry_id 8AVY _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 486.726 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHOLESTEROL HEMISUCCINATE' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8AVY _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8AVY _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N ? 4 K N N ? 4 L N N ? 4 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 430 A SER 430 1_555 C MG MG . A MG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc2 A OE1 GLN 471 A GLN 471 1_555 C MG MG . A MG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc3 A OG SER 1073 A SER 1073 1_555 E MG MG . A MG 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? metalc ? metalc4 A OE1 GLN 1114 A GLN 1114 1_555 E MG MG . A MG 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc5 B O1G ATP . A ATP 2001 1_555 C MG MG . A MG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? metalc ? metalc6 C MG MG . A MG 2002 1_555 N O HOH . A HOH 2102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc7 C MG MG . A MG 2002 1_555 N O HOH . A HOH 2103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? metalc ? metalc8 D O3G ATP . A ATP 2003 1_555 E MG MG . A MG 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? metalc ? metalc9 D O1B ATP . A ATP 2003 1_555 E MG MG . A MG 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc10 E MG MG . A MG 2004 1_555 N O HOH . A HOH 2101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? metalc ? metalc11 E MG MG . A MG 2004 1_555 N O HOH . A HOH 2104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? # _chem_comp.formula 'C31 H50 O4' _chem_comp.formula_weight 486.726 _chem_comp.id Y01 _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLESTEROL HEMISUCCINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CBA Y01 sing 425 n n CBA CAB Y01 sing 426 n n CBA CAN Y01 sing 427 n n CAN CAJ Y01 sing 428 n n CAJ CAO Y01 sing 429 n n CAO CBB Y01 sing 430 n n CBB CAC Y01 sing 431 n n CBB CBE Y01 sing 432 n n CBE CAP Y01 sing 433 n n CBE CBI Y01 sing 434 n n CAP CAQ Y01 sing 435 n n CAQ CBG Y01 sing 436 n n CBG CBI Y01 sing 437 n n CBG CBD Y01 sing 438 n n CBI CAE Y01 sing 439 n n CBI CAU Y01 sing 440 n n CAU CAS Y01 sing 441 n n CAS CBF Y01 sing 442 n n CBF CBD Y01 sing 443 n n CBF CBH Y01 sing 444 n n CBD CAK Y01 sing 445 n n CAK CAI Y01 sing 446 n n CAI CAZ Y01 doub 447 n n CAZ CAV Y01 sing 448 n n CAZ CBH Y01 sing 449 n n CAV CBC Y01 sing 450 n n CBH CAD Y01 sing 451 n n CBH CAT Y01 sing 452 n n CAT CAR Y01 sing 453 n n CAR CBC Y01 sing 454 n n CBC OAW Y01 sing 455 n n OAW CAY Y01 sing 456 n n CAY OAG Y01 doub 457 n n CAY CAM Y01 sing 458 n n CAM CAL Y01 sing 459 n n CAL CAX Y01 sing 460 n n CAX OAH Y01 sing 461 n n CAX OAF Y01 doub 462 n n CAA HAA1 Y01 sing 463 n n CAA HAA2 Y01 sing 464 n n CAA HAA3 Y01 sing 465 n n CBA HBA Y01 sing 466 n n CAB HAB1 Y01 sing 467 n n CAB HAB2 Y01 sing 468 n n CAB HAB3 Y01 sing 469 n n CAN HAN1 Y01 sing 470 n n CAN HAN2 Y01 sing 471 n n CAJ HAJ1 Y01 sing 472 n n CAJ HAJ2 Y01 sing 473 n n CAO HAO1 Y01 sing 474 n n CAO HAO2 Y01 sing 475 n n CBB HBB Y01 sing 476 n n CAC HAC1 Y01 sing 477 n n CAC HAC2 Y01 sing 478 n n CAC HAC3 Y01 sing 479 n n CBE HBE Y01 sing 480 n n CAP HAP1 Y01 sing 481 n n CAP HAP2 Y01 sing 482 n n CAQ HAQ1 Y01 sing 483 n n CAQ HAQ2 Y01 sing 484 n n CBG HBG Y01 sing 485 n n CBD HBD Y01 sing 486 n n CAE HAE1 Y01 sing 487 n n CAE HAE2 Y01 sing 488 n n CAE HAE3 Y01 sing 489 n n CAU HAU1 Y01 sing 490 n n CAU HAU2 Y01 sing 491 n n CAS HAS1 Y01 sing 492 n n CAS HAS2 Y01 sing 493 n n CBF HBF Y01 sing 494 n n CAK HAK1 Y01 sing 495 n n CAK HAK2 Y01 sing 496 n n CAI HAI Y01 sing 497 n n CAV HAV1 Y01 sing 498 n n CAV HAV2 Y01 sing 499 n n CBC HBC Y01 sing 500 n n CAD HAD1 Y01 sing 501 n n CAD HAD2 Y01 sing 502 n n CAD HAD3 Y01 sing 503 n n CAT HAT1 Y01 sing 504 n n CAT HAT2 Y01 sing 505 n n CAR HAR1 Y01 sing 506 n n CAR HAR2 Y01 sing 507 n n CAM HAM1 Y01 sing 508 n n CAM HAM2 Y01 sing 509 n n CAL HAL1 Y01 sing 510 n n CAL HAL2 Y01 sing 511 n n OAH HAH Y01 sing 512 n n # _atom_sites.entry_id 8AVY _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ATP A 1 2001 2001 ATP ATP . C 3 MG A 1 2002 2002 MG MG . D 2 ATP A 1 2003 2003 ATP ATP . E 3 MG A 1 2004 2004 MG MG . F 4 Y01 A 1 2005 2005 Y01 Y01 . G 4 Y01 A 1 2006 2006 Y01 Y01 . H 4 Y01 A 1 2007 2008 Y01 Y01 . I 4 Y01 A 1 2008 2009 Y01 Y01 . J 4 Y01 A 1 2009 2010 Y01 Y01 . K 4 Y01 A 1 2010 2011 Y01 Y01 . L 4 Y01 A 1 2011 2105 Y01 Y01 . M 4 Y01 A 1 2012 2106 Y01 Y01 . N 5 HOH A 1 2101 2102 HOH HOH . N 5 HOH A 2 2102 2103 HOH HOH . N 5 HOH A 3 2103 2101 HOH HOH . N 5 HOH A 4 2104 2104 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA Y01 . . . G 4 112.153 144.156 129.35 1 75.11 ? CAA Y01 2006 A 1 HETATM 2 C CBA Y01 . . . G 4 110.676 143.796 129.387 1 75.11 ? CBA Y01 2006 A 1 HETATM 3 C CAB Y01 . . . G 4 110.36 142.992 130.639 1 75.11 ? CAB Y01 2006 A 1 HETATM 4 C CAN Y01 . . . G 4 110.255 143.039 128.132 1 75.11 ? CAN Y01 2006 A 1 HETATM 5 C CAJ Y01 . . . G 4 110.875 141.677 127.974 1 75.11 ? CAJ Y01 2006 A 1 HETATM 6 C CAO Y01 . . . G 4 110.491 141 126.699 1 75.11 ? CAO Y01 2006 A 1 HETATM 7 C CBB Y01 . . . G 4 110.796 141.807 125.434 1 75.11 ? CBB Y01 2006 A 1 HETATM 8 C CAC Y01 . . . G 4 112.283 142.118 125.34 1 75.11 ? CAC Y01 2006 A 1 HETATM 9 C CBE Y01 . . . G 4 110.271 141.063 124.2 1 75.11 ? CBE Y01 2006 A 1 HETATM 10 C CAP Y01 . . . G 4 108.72 141.104 124.126 1 75.11 ? CAP Y01 2006 A 1 HETATM 11 C CAQ Y01 . . . G 4 108.358 141.457 122.676 1 75.11 ? CAQ Y01 2006 A 1 HETATM 12 C CBG Y01 . . . G 4 109.591 140.988 121.919 1 75.11 ? CBG Y01 2006 A 1 HETATM 13 C CBI Y01 . . . G 4 110.757 141.493 122.786 1 75.11 ? CBI Y01 2006 A 1 HETATM 14 C CAE Y01 . . . G 4 110.898 143.021 122.717 1 75.11 ? CAE Y01 2006 A 1 HETATM 15 C CAU Y01 . . . G 4 112.019 140.811 122.264 1 75.11 ? CAU Y01 2006 A 1 HETATM 16 C CAS Y01 . . . G 4 112.209 141.084 120.77 1 75.11 ? CAS Y01 2006 A 1 HETATM 17 C CBF Y01 . . . G 4 110.998 140.66 119.93 1 75.11 ? CBF Y01 2006 A 1 HETATM 18 C CBD Y01 . . . G 4 109.714 141.325 120.444 1 75.11 ? CBD Y01 2006 A 1 HETATM 19 C CAK Y01 . . . G 4 108.488 140.828 119.684 1 75.11 ? CAK Y01 2006 A 1 HETATM 20 C CAI Y01 . . . G 4 108.748 140.531 118.243 1 75.11 ? CAI Y01 2006 A 1 HETATM 21 C CAZ Y01 . . . G 4 109.928 140.596 117.649 1 75.11 ? CAZ Y01 2006 A 1 HETATM 22 C CAV Y01 . . . G 4 110.054 140.355 116.159 1 75.11 ? CAV Y01 2006 A 1 HETATM 23 C CBH Y01 . . . G 4 111.224 140.86 118.409 1 75.11 ? CBH Y01 2006 A 1 HETATM 24 C CAD Y01 . . . G 4 111.688 142.29 118.087 1 75.11 ? CAD Y01 2006 A 1 HETATM 25 C CAT Y01 . . . G 4 112.289 139.837 117.955 1 75.11 ? CAT Y01 2006 A 1 HETATM 26 C CAR Y01 . . . G 4 112.373 139.645 116.442 1 75.11 ? CAR Y01 2006 A 1 HETATM 27 C CBC Y01 . . . G 4 111.041 139.257 115.871 1 75.11 ? CBC Y01 2006 A 1 HETATM 28 O OAW Y01 . . . G 4 111.202 139.152 114.428 1 75.11 ? OAW Y01 2006 A 1 HETATM 29 C CAY Y01 . . . G 4 110.47 138.272 113.754 1 75.11 ? CAY Y01 2006 A 1 HETATM 30 O OAG Y01 . . . G 4 109.381 137.906 114.089 1 75.11 ? OAG Y01 2006 A 1 HETATM 31 C CAM Y01 . . . G 4 111.193 137.785 112.531 1 75.11 ? CAM Y01 2006 A 1 HETATM 32 C CAL Y01 . . . G 4 110.559 138.043 111.186 1 75.11 ? CAL Y01 2006 A 1 HETATM 33 C CAX Y01 . . . G 4 111.528 137.974 110.022 1 75.11 ? CAX Y01 2006 A 1 HETATM 34 O OAH Y01 . . . G 4 111.082 138.122 108.87 1 75.11 ? OAH Y01 2006 A 1 HETATM 35 O OAF Y01 . . . G 4 112.73 137.787 110.273 1 75.11 ? OAF Y01 2006 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 450 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 35 #