data_8AW7 # _model_server_result.job_id I5yhfNM89m4HLouHy2CUOA _model_server_result.datetime_utc '2024-11-20 17:32:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8aw7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 8AW7 # _exptl.entry_id 8AW7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 654.709 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'coproporphyrin III' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 92.404 _cell.angle_beta 103.519 _cell.angle_gamma 109.05 _cell.entry_id 8AW7 _cell.length_a 37.693 _cell.length_b 48.926 _cell.length_c 52.471 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8AW7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall 'P 1' _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C36 H38 N4 O8' _chem_comp.formula_weight 654.709 _chem_comp.id HT9 _chem_comp.mon_nstd_flag . _chem_comp.name 'coproporphyrin III' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C24 C16 HT9 sing 165 n n C16 C15 HT9 doub 166 n y C16 C17 HT9 sing 167 n y C27 C15 HT9 sing 168 n n C27 C28 HT9 sing 169 n n C35 C10 HT9 sing 170 n n C15 C18 HT9 sing 171 n y C20 C17 HT9 sing 172 n y C20 C13 HT9 doub 173 n y C28 C29 HT9 sing 174 n n C17 N4 HT9 doub 175 n y O5 C29 HT9 doub 176 n n C29 O6 HT9 sing 177 n n C10 C13 HT9 sing 178 n y C10 C11 HT9 doub 179 n y C13 N3 HT9 sing 180 n y C18 N4 HT9 sing 181 n y C18 C19 HT9 doub 182 n y C22 C21 HT9 sing 183 n n C22 C23 HT9 sing 184 n n C11 C21 HT9 sing 185 n n C11 C12 HT9 sing 186 n y C19 C3 HT9 sing 187 n y N3 C12 HT9 sing 188 n y O2 C23 HT9 doub 189 n n C23 O1 HT9 sing 190 n n C12 C14 HT9 doub 191 n y C3 N1 HT9 doub 192 n y C3 C2 HT9 sing 193 n y N1 C4 HT9 sing 194 n y C36 C2 HT9 sing 195 n n C14 C8 HT9 sing 196 n y C2 C1 HT9 doub 197 n y O3 C26 HT9 doub 198 n n N2 C8 HT9 sing 199 n y N2 C7 HT9 sing 200 n y C8 C5 HT9 doub 201 n y C4 C1 HT9 sing 202 n y C4 C9 HT9 doub 203 n y O4 C26 HT9 sing 204 n n C1 C34 HT9 sing 205 n n C26 C25 HT9 sing 206 n n C7 C9 HT9 sing 207 n y C7 C6 HT9 doub 208 n y C5 C6 HT9 sing 209 n y C5 C30 HT9 sing 210 n n C34 C25 HT9 sing 211 n n C31 C30 HT9 sing 212 n n C31 C32 HT9 sing 213 n n C6 C33 HT9 sing 214 n n O7 C32 HT9 doub 215 n n C32 O8 HT9 sing 216 n n C14 H1 HT9 sing 217 n n C19 H2 HT9 sing 218 n n C20 H3 HT9 sing 219 n n C21 H4 HT9 sing 220 n n C21 H5 HT9 sing 221 n n C22 H6 HT9 sing 222 n n C22 H7 HT9 sing 223 n n C24 H8 HT9 sing 224 n n C24 H9 HT9 sing 225 n n C24 H10 HT9 sing 226 n n C25 H11 HT9 sing 227 n n C25 H12 HT9 sing 228 n n C27 H13 HT9 sing 229 n n C27 H14 HT9 sing 230 n n C28 H15 HT9 sing 231 n n C28 H16 HT9 sing 232 n n C30 H17 HT9 sing 233 n n C30 H18 HT9 sing 234 n n C31 H19 HT9 sing 235 n n C31 H20 HT9 sing 236 n n C33 H21 HT9 sing 237 n n C33 H22 HT9 sing 238 n n C33 H23 HT9 sing 239 n n C34 H24 HT9 sing 240 n n C34 H25 HT9 sing 241 n n C35 H26 HT9 sing 242 n n C35 H27 HT9 sing 243 n n C35 H28 HT9 sing 244 n n C36 H29 HT9 sing 245 n n C36 H30 HT9 sing 246 n n C36 H31 HT9 sing 247 n n C9 H32 HT9 sing 248 n n N3 H34 HT9 sing 249 n n O1 H35 HT9 sing 250 n n O4 H36 HT9 sing 251 n n O6 H37 HT9 sing 252 n n O8 H38 HT9 sing 253 n n N2 H33 HT9 sing 254 n n # _atom_sites.entry_id 8AW7 _atom_sites.fract_transf_matrix[1][1] 0.02653 _atom_sites.fract_transf_matrix[1][2] 0.009161 _atom_sites.fract_transf_matrix[1][3] 0.007621 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021623 _atom_sites.fract_transf_matrix[2][3] 0.002805 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019766 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 401 404 GOL GOL . C 3 HT9 A 1 402 405 HT9 VEC . D 4 HOH A 1 501 11 HOH HOH . D 4 HOH A 2 502 3 HOH HOH . D 4 HOH A 3 503 7 HOH HOH . D 4 HOH A 4 504 5 HOH HOH . D 4 HOH A 5 505 4 HOH HOH . D 4 HOH A 6 506 9 HOH HOH . D 4 HOH A 7 507 6 HOH HOH . D 4 HOH A 8 508 2 HOH HOH . D 4 HOH A 9 509 10 HOH HOH . D 4 HOH A 10 510 12 HOH HOH . D 4 HOH A 11 511 14 HOH HOH . D 4 HOH A 12 512 1 HOH HOH . D 4 HOH A 13 513 13 HOH HOH . D 4 HOH A 14 514 8 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 HT9 . . . C 3 2.067 -4.275 -17.835 1 50.17 ? C1 HT9 402 A 1 HETATM 2 C C10 HT9 . . . C 3 9.788 -7.302 -15.375 1 64.18 ? C10 HT9 402 A 1 HETATM 3 C C11 HT9 . . . C 3 9.459 -8.284 -16.262 1 69.58 ? C11 HT9 402 A 1 HETATM 4 C C12 HT9 . . . C 3 8.078 -8.015 -16.663 1 62.92 ? C12 HT9 402 A 1 HETATM 5 C C13 HT9 . . . C 3 8.674 -6.35 -15.388 1 56.71 ? C13 HT9 402 A 1 HETATM 6 C C14 HT9 . . . C 3 7.302 -8.807 -17.481 1 59.79 ? C14 HT9 402 A 1 HETATM 7 C C15 HT9 . . . C 3 6.396 -2.347 -13.994 1 45.25 ? C15 HT9 402 A 1 HETATM 8 C C16 HT9 . . . C 3 7.621 -2.989 -13.796 1 56.15 ? C16 HT9 402 A 1 HETATM 9 C C17 HT9 . . . C 3 7.655 -4.173 -14.62 1 45.58 ? C17 HT9 402 A 1 HETATM 10 C C18 HT9 . . . C 3 5.662 -3.139 -14.946 1 45.9 ? C18 HT9 402 A 1 HETATM 11 C C19 HT9 . . . C 3 4.389 -2.887 -15.463 1 46.46 ? C19 HT9 402 A 1 HETATM 12 C C2 HT9 . . . C 3 2.396 -3.275 -16.969 1 49.34 ? C2 HT9 402 A 1 HETATM 13 C C20 HT9 . . . C 3 8.677 -5.124 -14.719 1 55.96 ? C20 HT9 402 A 1 HETATM 14 C C21 HT9 . . . C 3 10.369 -9.406 -16.66 1 60.3 ? C21 HT9 402 A 1 HETATM 15 C C22 HT9 . . . C 3 10.439 -9.651 -18.166 1 85.34 ? C22 HT9 402 A 1 HETATM 16 C C23 HT9 . . . C 3 11.694 -10.367 -18.613 1 88.31 ? C23 HT9 402 A 1 HETATM 17 C C24 HT9 . . . C 3 8.731 -2.543 -12.885 1 52.45 ? C24 HT9 402 A 1 HETATM 18 C C25 HT9 . . . C 3 -0.334 -4.896 -18.367 1 55.08 ? C25 HT9 402 A 1 HETATM 19 C C26 HT9 . . . C 3 -1.38 -4.869 -19.461 1 47.53 ? C26 HT9 402 A 1 HETATM 20 C C27 HT9 . . . C 3 5.923 -1.069 -13.362 1 44.58 ? C27 HT9 402 A 1 HETATM 21 C C28 HT9 . . . C 3 6.422 0.19 -14.107 1 45.96 ? C28 HT9 402 A 1 HETATM 22 C C29 HT9 . . . C 3 6.001 0.304 -15.571 1 45.93 ? C29 HT9 402 A 1 HETATM 23 C C3 HT9 . . . C 3 3.63 -3.702 -16.304 1 49.33 ? C3 HT9 402 A 1 HETATM 24 C C30 HT9 . . . C 3 5.674 -10.663 -19.456 1 64.32 ? C30 HT9 402 A 1 HETATM 25 C C31 HT9 . . . C 3 4.941 -11.867 -18.877 1 67.67 ? C31 HT9 402 A 1 HETATM 26 C C32 HT9 . . . C 3 4.907 -11.883 -17.352 1 77.18 ? C32 HT9 402 A 1 HETATM 27 C C33 HT9 . . . C 3 2.896 -9.184 -19.934 1 64.13 ? C33 HT9 402 A 1 HETATM 28 C C34 HT9 . . . C 3 0.967 -4.28 -18.849 1 53.29 ? C34 HT9 402 A 1 HETATM 29 C C35 HT9 . . . C 3 11.05 -7.163 -14.574 1 67.82 ? C35 HT9 402 A 1 HETATM 30 C C36 HT9 . . . C 3 1.708 -1.953 -16.782 1 46.52 ? C36 HT9 402 A 1 HETATM 31 C C4 HT9 . . . C 3 3.035 -5.338 -17.609 1 52.74 ? C4 HT9 402 A 1 HETATM 32 C C5 HT9 . . . C 3 5.231 -9.358 -18.857 1 65.68 ? C5 HT9 402 A 1 HETATM 33 C C6 HT9 . . . C 3 4.028 -8.723 -19.061 1 65.69 ? C6 HT9 402 A 1 HETATM 34 C C7 HT9 . . . C 3 4.028 -7.516 -18.291 1 61.52 ? C7 HT9 402 A 1 HETATM 35 C C8 HT9 . . . C 3 6.006 -8.552 -17.953 1 65.49 ? C8 HT9 402 A 1 HETATM 36 C C9 HT9 . . . C 3 3.022 -6.55 -18.252 1 55.53 ? C9 HT9 402 A 1 HETATM 37 N N1 HT9 . . . C 3 3.993 -4.953 -16.711 1 48.26 ? N1 HT9 402 A 1 HETATM 38 N N2 HT9 . . . C 3 5.248 -7.444 -17.658 1 62.07 ? N2 HT9 402 A 1 HETATM 39 N N3 HT9 . . . C 3 7.651 -6.82 -16.158 1 60 ? N3 HT9 402 A 1 HETATM 40 N N4 HT9 . . . C 3 6.451 -4.228 -15.296 1 46.34 ? N4 HT9 402 A 1 HETATM 41 O O1 HT9 . . . C 3 11.677 -11.613 -18.65 1 86.12 ? O1 HT9 402 A 1 HETATM 42 O O2 HT9 . . . C 3 12.685 -9.671 -18.94 1 81.39 ? O2 HT9 402 A 1 HETATM 43 O O3 HT9 . . . C 3 -2.519 -4.479 -19.164 1 52.02 ? O3 HT9 402 A 1 HETATM 44 O O4 HT9 . . . C 3 -1.035 -5.221 -20.617 1 50.73 ? O4 HT9 402 A 1 HETATM 45 O O5 HT9 . . . C 3 6.89 0.186 -16.443 1 49.69 ? O5 HT9 402 A 1 HETATM 46 O O6 HT9 . . . C 3 4.791 0.517 -15.826 1 43.7 ? O6 HT9 402 A 1 HETATM 47 O O7 HT9 . . . C 3 3.917 -11.369 -16.78 1 90.98 ? O7 HT9 402 A 1 HETATM 48 O O8 HT9 . . . C 3 5.871 -12.406 -16.75 1 78.05 ? O8 HT9 402 A 1 HETATM 49 H H1 HT9 . . . C 3 7.69 -9.63 -17.764 1 71.82 ? H1 HT9 402 A 1 HETATM 50 H H2 HT9 . . . C 3 4 -2.066 -15.211 1 55.82 ? H2 HT9 402 A 1 HETATM 51 H H3 HT9 . . . C 3 9.476 -4.902 -14.27 1 67.22 ? H3 HT9 402 A 1 HETATM 52 H H4 HT9 . . . C 3 10.063 -10.227 -16.225 1 72.43 ? H4 HT9 402 A 1 HETATM 53 H H5 HT9 . . . C 3 11.27 -9.211 -16.333 1 72.43 ? H5 HT9 402 A 1 HETATM 54 H H6 HT9 . . . C 3 10.398 -8.796 -18.646 1 102.48 ? H6 HT9 402 A 1 HETATM 55 H H7 HT9 . . . C 3 9.671 -10.189 -18.454 1 102.48 ? H7 HT9 402 A 1 HETATM 56 H H8 HT9 . . . C 3 9.586 -2.808 -13.26 1 63.01 ? H8 HT9 402 A 1 HETATM 57 H H9 HT9 . . . C 3 8.621 -2.954 -12.012 1 63.01 ? H9 HT9 402 A 1 HETATM 58 H H10 HT9 . . . C 3 8.706 -1.577 -12.791 1 63.01 ? H10 HT9 402 A 1 HETATM 59 H H11 HT9 . . . C 3 -0.682 -4.407 -17.591 1 66.16 ? H11 HT9 402 A 1 HETATM 60 H H12 HT9 . . . C 3 -0.196 -5.828 -18.092 1 66.16 ? H12 HT9 402 A 1 HETATM 61 H H13 HT9 . . . C 3 6.236 -1.033 -12.43 1 53.56 ? H13 HT9 402 A 1 HETATM 62 H H14 HT9 . . . C 3 4.941 -1.06 -13.343 1 53.56 ? H14 HT9 402 A 1 HETATM 63 H H15 HT9 . . . C 3 7.406 0.206 -14.067 1 55.23 ? H15 HT9 402 A 1 HETATM 64 H H16 HT9 . . . C 3 6.093 0.985 -13.628 1 55.23 ? H16 HT9 402 A 1 HETATM 65 H H17 HT9 . . . C 3 6.639 -10.776 -19.307 1 77.25 ? H17 HT9 402 A 1 HETATM 66 H H18 HT9 . . . C 3 5.527 -10.639 -20.428 1 77.25 ? H18 HT9 402 A 1 HETATM 67 H H19 HT9 . . . C 3 5.378 -12.691 -19.194 1 81.27 ? H19 HT9 402 A 1 HETATM 68 H H20 HT9 . . . C 3 4.016 -11.873 -19.215 1 81.27 ? H20 HT9 402 A 1 HETATM 69 H H21 HT9 . . . C 3 2.304 -9.759 -19.423 1 77.03 ? H21 HT9 402 A 1 HETATM 70 H H22 HT9 . . . C 3 3.249 -9.677 -20.692 1 77.03 ? H22 HT9 402 A 1 HETATM 71 H H23 HT9 . . . C 3 2.399 -8.414 -20.255 1 77.03 ? H23 HT9 402 A 1 HETATM 72 H H24 HT9 . . . C 3 1.272 -4.775 -19.637 1 64.02 ? H24 HT9 402 A 1 HETATM 73 H H25 HT9 . . . C 3 0.792 -3.358 -19.123 1 64.02 ? H25 HT9 402 A 1 HETATM 74 H H26 HT9 . . . C 3 11.706 -6.666 -15.085 1 81.45 ? H26 HT9 402 A 1 HETATM 75 H H27 HT9 . . . C 3 11.401 -8.043 -14.368 1 81.45 ? H27 HT9 402 A 1 HETATM 76 H H28 HT9 . . . C 3 10.861 -6.692 -13.749 1 81.45 ? H28 HT9 402 A 1 HETATM 77 H H29 HT9 . . . C 3 2.098 -1.297 -17.38 1 55.9 ? H29 HT9 402 A 1 HETATM 78 H H30 HT9 . . . C 3 1.817 -1.657 -15.866 1 55.9 ? H30 HT9 402 A 1 HETATM 79 H H31 HT9 . . . C 3 0.764 -2.047 -16.98 1 55.9 ? H31 HT9 402 A 1 HETATM 80 H H32 HT9 . . . C 3 2.227 -6.763 -18.733 1 66.71 ? H32 HT9 402 A 1 HETATM 81 H H34 HT9 . . . C 3 6.392 -4.603 -16.111 1 55.68 ? H34 HT9 402 A 1 HETATM 82 H H33 HT9 . . . C 3 5.506 -6.783 -17.139 1 74.55 ? H33 HT9 402 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 239 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 82 #