data_8AWC # _model_server_result.job_id jr9dX1GU_jpDBgNnZJUj-Q _model_server_result.datetime_utc '2024-10-19 10:32:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8awc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 8AWC # _exptl.entry_id 8AWC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8AWC _cell.length_a 87.165 _cell.length_b 94.506 _cell.length_c 98.794 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8AWC _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall 'I 2 2' _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 181 A GLU 181 1_555 B MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.956 ? metalc ? metalc2 A OE2 GLU 181 A GLU 181 1_555 B MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.824 ? metalc ? metalc3 A OE1 GLU 217 A GLU 217 1_555 B MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.521 ? metalc ? metalc4 A OE2 GLU 217 A GLU 217 1_555 D MN MN . A MN 403 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.005 ? metalc ? metalc5 A OE2 GLU 217 A GLU 217 1_555 D MN MN . A MN 403 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.33 ? metalc ? metalc6 A NE2 HIS 220 A HIS 220 1_555 D MN MN . A MN 403 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.495 ? metalc ? metalc7 A NE2 HIS 220 A HIS 220 1_555 D MN MN . A MN 403 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.046 ? metalc ? metalc8 A OD2 ASP 245 A ASP 245 1_555 B MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? metalc ? metalc9 A OD1 ASP 255 A ASP 255 1_555 D MN MN . A MN 403 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.327 ? metalc ? metalc10 A OD1 ASP 255 A ASP 255 1_555 D MN MN . A MN 403 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.697 ? metalc ? metalc11 A OD2 ASP 255 A ASP 255 1_555 D MN MN . A MN 403 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.293 ? metalc ? metalc12 A OD2 ASP 255 A ASP 255 1_555 D MN MN . A MN 403 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.185 ? metalc ? metalc13 A OD1 ASP 257 A ASP 257 1_555 D MN MN . A MN 403 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.129 ? metalc ? metalc14 A OD1 ASP 257 A ASP 257 1_555 D MN MN . A MN 403 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.761 ? metalc ? metalc15 A OD2 ASP 287 A ASP 287 1_555 B MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.757 ? metalc ? metalc16 B MG MG . A MG 401 1_555 C O2 GOL . A GOL 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? metalc ? metalc17 D MN MN . A MN 403 1_555 E O HOH . A HOH 658 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc18 D MN MN . A MN 403 1_555 E O HOH . A HOH 658 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.963 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 8AWC _atom_sites.fract_transf_matrix[1][1] 0.011472 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010581 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010122 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 401 401 MG MG . C 3 GOL A 1 402 403 GOL GOL . D 4 MN A 1 403 1 MN MN . E 5 HOH A 1 501 206 HOH HOH . E 5 HOH A 2 502 168 HOH HOH . E 5 HOH A 3 503 199 HOH HOH . E 5 HOH A 4 504 90 HOH HOH . E 5 HOH A 5 505 169 HOH HOH . E 5 HOH A 6 506 210 HOH HOH . E 5 HOH A 7 507 186 HOH HOH . E 5 HOH A 8 508 167 HOH HOH . E 5 HOH A 9 509 178 HOH HOH . E 5 HOH A 10 510 130 HOH HOH . E 5 HOH A 11 511 80 HOH HOH . E 5 HOH A 12 512 204 HOH HOH . E 5 HOH A 13 513 46 HOH HOH . E 5 HOH A 14 514 185 HOH HOH . E 5 HOH A 15 515 55 HOH HOH . E 5 HOH A 16 516 150 HOH HOH . E 5 HOH A 17 517 108 HOH HOH . E 5 HOH A 18 518 33 HOH HOH . E 5 HOH A 19 519 138 HOH HOH . E 5 HOH A 20 520 151 HOH HOH . E 5 HOH A 21 521 116 HOH HOH . E 5 HOH A 22 522 117 HOH HOH . E 5 HOH A 23 523 2 HOH HOH . E 5 HOH A 24 524 77 HOH HOH . E 5 HOH A 25 525 160 HOH HOH . E 5 HOH A 26 526 170 HOH HOH . E 5 HOH A 27 527 139 HOH HOH . E 5 HOH A 28 528 88 HOH HOH . E 5 HOH A 29 529 209 HOH HOH . E 5 HOH A 30 530 67 HOH HOH . E 5 HOH A 31 531 129 HOH HOH . E 5 HOH A 32 532 38 HOH HOH . E 5 HOH A 33 533 4 HOH HOH . E 5 HOH A 34 534 40 HOH HOH . E 5 HOH A 35 535 31 HOH HOH . E 5 HOH A 36 536 29 HOH HOH . E 5 HOH A 37 537 45 HOH HOH . E 5 HOH A 38 538 50 HOH HOH . E 5 HOH A 39 539 83 HOH HOH . E 5 HOH A 40 540 78 HOH HOH . E 5 HOH A 41 541 152 HOH HOH . E 5 HOH A 42 542 109 HOH HOH . E 5 HOH A 43 543 75 HOH HOH . E 5 HOH A 44 544 18 HOH HOH . E 5 HOH A 45 545 192 HOH HOH . E 5 HOH A 46 546 118 HOH HOH . E 5 HOH A 47 547 11 HOH HOH . E 5 HOH A 48 548 13 HOH HOH . E 5 HOH A 49 549 123 HOH HOH . E 5 HOH A 50 550 15 HOH HOH . E 5 HOH A 51 551 188 HOH HOH . E 5 HOH A 52 552 218 HOH HOH . E 5 HOH A 53 553 134 HOH HOH . E 5 HOH A 54 554 193 HOH HOH . E 5 HOH A 55 555 34 HOH HOH . E 5 HOH A 56 556 19 HOH HOH . E 5 HOH A 57 557 52 HOH HOH . E 5 HOH A 58 558 94 HOH HOH . E 5 HOH A 59 559 212 HOH HOH . E 5 HOH A 60 560 173 HOH HOH . E 5 HOH A 61 561 145 HOH HOH . E 5 HOH A 62 562 62 HOH HOH . E 5 HOH A 63 563 146 HOH HOH . E 5 HOH A 64 564 72 HOH HOH . E 5 HOH A 65 565 35 HOH HOH . E 5 HOH A 66 566 14 HOH HOH . E 5 HOH A 67 567 12 HOH HOH . E 5 HOH A 68 568 60 HOH HOH . E 5 HOH A 69 569 98 HOH HOH . E 5 HOH A 70 570 44 HOH HOH . E 5 HOH A 71 571 20 HOH HOH . E 5 HOH A 72 572 47 HOH HOH . E 5 HOH A 73 573 28 HOH HOH . E 5 HOH A 74 574 41 HOH HOH . E 5 HOH A 75 575 61 HOH HOH . E 5 HOH A 76 576 17 HOH HOH . E 5 HOH A 77 577 53 HOH HOH . E 5 HOH A 78 578 85 HOH HOH . E 5 HOH A 79 579 104 HOH HOH . E 5 HOH A 80 580 73 HOH HOH . E 5 HOH A 81 581 196 HOH HOH . E 5 HOH A 82 582 102 HOH HOH . E 5 HOH A 83 583 122 HOH HOH . E 5 HOH A 84 584 142 HOH HOH . E 5 HOH A 85 585 10 HOH HOH . E 5 HOH A 86 586 91 HOH HOH . E 5 HOH A 87 587 143 HOH HOH . E 5 HOH A 88 588 76 HOH HOH . E 5 HOH A 89 589 30 HOH HOH . E 5 HOH A 90 590 24 HOH HOH . E 5 HOH A 91 591 36 HOH HOH . E 5 HOH A 92 592 126 HOH HOH . E 5 HOH A 93 593 97 HOH HOH . E 5 HOH A 94 594 7 HOH HOH . E 5 HOH A 95 595 65 HOH HOH . E 5 HOH A 96 596 136 HOH HOH . E 5 HOH A 97 597 140 HOH HOH . E 5 HOH A 98 598 207 HOH HOH . E 5 HOH A 99 599 49 HOH HOH . E 5 HOH A 100 600 56 HOH HOH . E 5 HOH A 101 601 191 HOH HOH . E 5 HOH A 102 602 66 HOH HOH . E 5 HOH A 103 603 37 HOH HOH . E 5 HOH A 104 604 23 HOH HOH . E 5 HOH A 105 605 159 HOH HOH . E 5 HOH A 106 606 8 HOH HOH . E 5 HOH A 107 607 51 HOH HOH . E 5 HOH A 108 608 119 HOH HOH . E 5 HOH A 109 609 9 HOH HOH . E 5 HOH A 110 610 27 HOH HOH . E 5 HOH A 111 611 153 HOH HOH . E 5 HOH A 112 612 106 HOH HOH . E 5 HOH A 113 613 164 HOH HOH . E 5 HOH A 114 614 1 HOH HOH . E 5 HOH A 115 615 115 HOH HOH . E 5 HOH A 116 616 154 HOH HOH . E 5 HOH A 117 617 16 HOH HOH . E 5 HOH A 118 618 133 HOH HOH . E 5 HOH A 119 619 156 HOH HOH . E 5 HOH A 120 620 82 HOH HOH . E 5 HOH A 121 621 99 HOH HOH . E 5 HOH A 122 622 205 HOH HOH . E 5 HOH A 123 623 171 HOH HOH . E 5 HOH A 124 624 26 HOH HOH . E 5 HOH A 125 625 181 HOH HOH . E 5 HOH A 126 626 42 HOH HOH . E 5 HOH A 127 627 5 HOH HOH . E 5 HOH A 128 628 165 HOH HOH . E 5 HOH A 129 629 197 HOH HOH . E 5 HOH A 130 630 54 HOH HOH . E 5 HOH A 131 631 128 HOH HOH . E 5 HOH A 132 632 162 HOH HOH . E 5 HOH A 133 633 57 HOH HOH . E 5 HOH A 134 634 22 HOH HOH . E 5 HOH A 135 635 69 HOH HOH . E 5 HOH A 136 636 124 HOH HOH . E 5 HOH A 137 637 87 HOH HOH . E 5 HOH A 138 638 70 HOH HOH . E 5 HOH A 139 639 71 HOH HOH . E 5 HOH A 140 640 101 HOH HOH . E 5 HOH A 141 641 25 HOH HOH . E 5 HOH A 142 642 39 HOH HOH . E 5 HOH A 143 643 120 HOH HOH . E 5 HOH A 144 644 161 HOH HOH . E 5 HOH A 145 645 174 HOH HOH . E 5 HOH A 146 646 137 HOH HOH . E 5 HOH A 147 647 21 HOH HOH . E 5 HOH A 148 648 100 HOH HOH . E 5 HOH A 149 649 6 HOH HOH . E 5 HOH A 150 650 64 HOH HOH . E 5 HOH A 151 651 84 HOH HOH . E 5 HOH A 152 652 3 HOH HOH . E 5 HOH A 153 653 175 HOH HOH . E 5 HOH A 154 654 81 HOH HOH . E 5 HOH A 155 655 110 HOH HOH . E 5 HOH A 156 656 43 HOH HOH . E 5 HOH A 157 657 58 HOH HOH . E 5 HOH A 158 658 194 HOH HOH . E 5 HOH A 159 659 95 HOH HOH . E 5 HOH A 160 660 103 HOH HOH . E 5 HOH A 161 661 155 HOH HOH . E 5 HOH A 162 662 217 HOH HOH . E 5 HOH A 163 663 114 HOH HOH . E 5 HOH A 164 664 105 HOH HOH . E 5 HOH A 165 665 86 HOH HOH . E 5 HOH A 166 666 32 HOH HOH . E 5 HOH A 167 667 214 HOH HOH . E 5 HOH A 168 668 176 HOH HOH . E 5 HOH A 169 669 147 HOH HOH . E 5 HOH A 170 670 63 HOH HOH . E 5 HOH A 171 671 200 HOH HOH . E 5 HOH A 172 672 187 HOH HOH . E 5 HOH A 173 673 68 HOH HOH . E 5 HOH A 174 674 189 HOH HOH . E 5 HOH A 175 675 74 HOH HOH . E 5 HOH A 176 676 183 HOH HOH . E 5 HOH A 177 677 113 HOH HOH . E 5 HOH A 178 678 211 HOH HOH . E 5 HOH A 179 679 213 HOH HOH . E 5 HOH A 180 680 96 HOH HOH . E 5 HOH A 181 681 127 HOH HOH . E 5 HOH A 182 682 182 HOH HOH . E 5 HOH A 183 683 177 HOH HOH . E 5 HOH A 184 684 107 HOH HOH . E 5 HOH A 185 685 149 HOH HOH . E 5 HOH A 186 686 195 HOH HOH . E 5 HOH A 187 687 89 HOH HOH . E 5 HOH A 188 688 79 HOH HOH . E 5 HOH A 189 689 132 HOH HOH . E 5 HOH A 190 690 166 HOH HOH . E 5 HOH A 191 691 144 HOH HOH . E 5 HOH A 192 692 141 HOH HOH . E 5 HOH A 193 693 59 HOH HOH . E 5 HOH A 194 694 48 HOH HOH . E 5 HOH A 195 695 180 HOH HOH . E 5 HOH A 196 696 179 HOH HOH . E 5 HOH A 197 697 111 HOH HOH . E 5 HOH A 198 698 190 HOH HOH . E 5 HOH A 199 699 93 HOH HOH . E 5 HOH A 200 700 121 HOH HOH . E 5 HOH A 201 701 216 HOH HOH . E 5 HOH A 202 702 208 HOH HOH . E 5 HOH A 203 703 203 HOH HOH . E 5 HOH A 204 704 112 HOH HOH . E 5 HOH A 205 705 202 HOH HOH . E 5 HOH A 206 706 163 HOH HOH . E 5 HOH A 207 707 125 HOH HOH . E 5 HOH A 208 708 135 HOH HOH . E 5 HOH A 209 709 131 HOH HOH . E 5 HOH A 210 710 172 HOH HOH . E 5 HOH A 211 711 198 HOH HOH . E 5 HOH A 212 712 148 HOH HOH . E 5 HOH A 213 713 157 HOH HOH . E 5 HOH A 214 714 184 HOH HOH . E 5 HOH A 215 715 215 HOH HOH . E 5 HOH A 216 716 92 HOH HOH . E 5 HOH A 217 717 201 HOH HOH . E 5 HOH A 218 718 158 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 -18.166 -12.049 -6.335 0.91 22.93 ? C1 GOL 402 A 1 HETATM 2 O O1 GOL . . . C 3 -17.352 -10.904 -6.476 0.91 29.81 ? O1 GOL 402 A 1 HETATM 3 C C2 GOL . . . C 3 -17.238 -13.28 -6.367 0.91 24.46 ? C2 GOL 402 A 1 HETATM 4 O O2 GOL . . . C 3 -16.475 -13.332 -7.514 0.91 21.03 ? O2 GOL 402 A 1 HETATM 5 C C3 GOL . . . C 3 -18.153 -14.483 -6.262 0.91 19.05 ? C3 GOL 402 A 1 HETATM 6 O O3 GOL . . . C 3 -18.867 -14.377 -5.081 0.91 19.88 ? O3 GOL 402 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #