data_8AWD # _model_server_result.job_id hHUIkJWVBDLAlPEKCMLrBQ _model_server_result.datetime_utc '2024-11-22 02:27:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8awd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 8AWD # _exptl.entry_id 8AWD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8AWD _cell.length_a 93.48 _cell.length_b 99.11 _cell.length_c 102.46 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8AWD _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall 'I 2 2' _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_545 -x,-y-1,z -1 0 0 0 -1 0 0 0 1 0 -99.11 0 3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 4_545 x,-y-1,-z 1 0 0 0 -1 0 0 0 -1 0 -99.11 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 181 A GLU 181 1_555 B MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.959 ? metalc ? metalc2 A OE1 GLU 217 A GLU 217 1_555 B MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc3 A OE2 GLU 217 A GLU 217 1_555 E MN MN . A MN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc4 A NE2 HIS 220 A HIS 220 1_555 E MN MN . A MN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? metalc ? metalc5 A OD2 ASP 245 A ASP 245 1_555 B MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc6 A OD1 ASP 255 A ASP 255 1_555 E MN MN . A MN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc7 A OD2 ASP 255 A ASP 255 1_555 E MN MN . A MN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc8 A OD1 ASP 257 A ASP 257 1_555 E MN MN . A MN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? metalc ? metalc9 A OD2 ASP 287 A ASP 287 1_555 B MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? metalc ? metalc10 B MG MG . A MG 401 1_555 C O2 GOL . A GOL 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? metalc ? metalc11 E MN MN . A MN 404 1_555 F O HOH . A HOH 670 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 8AWD _atom_sites.fract_transf_matrix[1][1] 0.010697 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01009 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00976 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 401 401 MG MG . C 3 GOL A 1 402 501 GOL GOL . D 4 PEG A 1 403 502 PEG PEG . E 5 MN A 1 404 1 MN MN . F 6 HOH A 1 501 102 HOH HOH . F 6 HOH A 2 502 116 HOH HOH . F 6 HOH A 3 503 206 HOH HOH . F 6 HOH A 4 504 171 HOH HOH . F 6 HOH A 5 505 234 HOH HOH . F 6 HOH A 6 506 224 HOH HOH . F 6 HOH A 7 507 233 HOH HOH . F 6 HOH A 8 508 123 HOH HOH . F 6 HOH A 9 509 115 HOH HOH . F 6 HOH A 10 510 182 HOH HOH . F 6 HOH A 11 511 226 HOH HOH . F 6 HOH A 12 512 146 HOH HOH . F 6 HOH A 13 513 32 HOH HOH . F 6 HOH A 14 514 232 HOH HOH . F 6 HOH A 15 515 137 HOH HOH . F 6 HOH A 16 516 6 HOH HOH . F 6 HOH A 17 517 36 HOH HOH . F 6 HOH A 18 518 202 HOH HOH . F 6 HOH A 19 519 47 HOH HOH . F 6 HOH A 20 520 31 HOH HOH . F 6 HOH A 21 521 77 HOH HOH . F 6 HOH A 22 522 39 HOH HOH . F 6 HOH A 23 523 160 HOH HOH . F 6 HOH A 24 524 10 HOH HOH . F 6 HOH A 25 525 219 HOH HOH . F 6 HOH A 26 526 33 HOH HOH . F 6 HOH A 27 527 58 HOH HOH . F 6 HOH A 28 528 166 HOH HOH . F 6 HOH A 29 529 65 HOH HOH . F 6 HOH A 30 530 201 HOH HOH . F 6 HOH A 31 531 51 HOH HOH . F 6 HOH A 32 532 40 HOH HOH . F 6 HOH A 33 533 66 HOH HOH . F 6 HOH A 34 534 55 HOH HOH . F 6 HOH A 35 535 59 HOH HOH . F 6 HOH A 36 536 73 HOH HOH . F 6 HOH A 37 537 99 HOH HOH . F 6 HOH A 38 538 44 HOH HOH . F 6 HOH A 39 539 14 HOH HOH . F 6 HOH A 40 540 19 HOH HOH . F 6 HOH A 41 541 124 HOH HOH . F 6 HOH A 42 542 131 HOH HOH . F 6 HOH A 43 543 69 HOH HOH . F 6 HOH A 44 544 97 HOH HOH . F 6 HOH A 45 545 172 HOH HOH . F 6 HOH A 46 546 86 HOH HOH . F 6 HOH A 47 547 100 HOH HOH . F 6 HOH A 48 548 56 HOH HOH . F 6 HOH A 49 549 193 HOH HOH . F 6 HOH A 50 550 209 HOH HOH . F 6 HOH A 51 551 13 HOH HOH . F 6 HOH A 52 552 28 HOH HOH . F 6 HOH A 53 553 149 HOH HOH . F 6 HOH A 54 554 130 HOH HOH . F 6 HOH A 55 555 25 HOH HOH . F 6 HOH A 56 556 34 HOH HOH . F 6 HOH A 57 557 45 HOH HOH . F 6 HOH A 58 558 93 HOH HOH . F 6 HOH A 59 559 148 HOH HOH . F 6 HOH A 60 560 108 HOH HOH . F 6 HOH A 61 561 4 HOH HOH . F 6 HOH A 62 562 27 HOH HOH . F 6 HOH A 63 563 138 HOH HOH . F 6 HOH A 64 564 183 HOH HOH . F 6 HOH A 65 565 107 HOH HOH . F 6 HOH A 66 566 48 HOH HOH . F 6 HOH A 67 567 1 HOH HOH . F 6 HOH A 68 568 106 HOH HOH . F 6 HOH A 69 569 5 HOH HOH . F 6 HOH A 70 570 159 HOH HOH . F 6 HOH A 71 571 220 HOH HOH . F 6 HOH A 72 572 12 HOH HOH . F 6 HOH A 73 573 50 HOH HOH . F 6 HOH A 74 574 2 HOH HOH . F 6 HOH A 75 575 140 HOH HOH . F 6 HOH A 76 576 128 HOH HOH . F 6 HOH A 77 577 96 HOH HOH . F 6 HOH A 78 578 64 HOH HOH . F 6 HOH A 79 579 30 HOH HOH . F 6 HOH A 80 580 75 HOH HOH . F 6 HOH A 81 581 72 HOH HOH . F 6 HOH A 82 582 109 HOH HOH . F 6 HOH A 83 583 173 HOH HOH . F 6 HOH A 84 584 76 HOH HOH . F 6 HOH A 85 585 91 HOH HOH . F 6 HOH A 86 586 87 HOH HOH . F 6 HOH A 87 587 83 HOH HOH . F 6 HOH A 88 588 71 HOH HOH . F 6 HOH A 89 589 88 HOH HOH . F 6 HOH A 90 590 43 HOH HOH . F 6 HOH A 91 591 49 HOH HOH . F 6 HOH A 92 592 227 HOH HOH . F 6 HOH A 93 593 26 HOH HOH . F 6 HOH A 94 594 46 HOH HOH . F 6 HOH A 95 595 62 HOH HOH . F 6 HOH A 96 596 190 HOH HOH . F 6 HOH A 97 597 18 HOH HOH . F 6 HOH A 98 598 126 HOH HOH . F 6 HOH A 99 599 204 HOH HOH . F 6 HOH A 100 600 136 HOH HOH . F 6 HOH A 101 601 15 HOH HOH . F 6 HOH A 102 602 61 HOH HOH . F 6 HOH A 103 603 168 HOH HOH . F 6 HOH A 104 604 119 HOH HOH . F 6 HOH A 105 605 104 HOH HOH . F 6 HOH A 106 606 199 HOH HOH . F 6 HOH A 107 607 150 HOH HOH . F 6 HOH A 108 608 53 HOH HOH . F 6 HOH A 109 609 153 HOH HOH . F 6 HOH A 110 610 213 HOH HOH . F 6 HOH A 111 611 78 HOH HOH . F 6 HOH A 112 612 231 HOH HOH . F 6 HOH A 113 613 52 HOH HOH . F 6 HOH A 114 614 157 HOH HOH . F 6 HOH A 115 615 29 HOH HOH . F 6 HOH A 116 616 121 HOH HOH . F 6 HOH A 117 617 21 HOH HOH . F 6 HOH A 118 618 16 HOH HOH . F 6 HOH A 119 619 54 HOH HOH . F 6 HOH A 120 620 117 HOH HOH . F 6 HOH A 121 621 79 HOH HOH . F 6 HOH A 122 622 17 HOH HOH . F 6 HOH A 123 623 105 HOH HOH . F 6 HOH A 124 624 133 HOH HOH . F 6 HOH A 125 625 38 HOH HOH . F 6 HOH A 126 626 145 HOH HOH . F 6 HOH A 127 627 135 HOH HOH . F 6 HOH A 128 628 11 HOH HOH . F 6 HOH A 129 629 20 HOH HOH . F 6 HOH A 130 630 8 HOH HOH . F 6 HOH A 131 631 195 HOH HOH . F 6 HOH A 132 632 85 HOH HOH . F 6 HOH A 133 633 63 HOH HOH . F 6 HOH A 134 634 98 HOH HOH . F 6 HOH A 135 635 35 HOH HOH . F 6 HOH A 136 636 221 HOH HOH . F 6 HOH A 137 637 191 HOH HOH . F 6 HOH A 138 638 210 HOH HOH . F 6 HOH A 139 639 37 HOH HOH . F 6 HOH A 140 640 67 HOH HOH . F 6 HOH A 141 641 139 HOH HOH . F 6 HOH A 142 642 132 HOH HOH . F 6 HOH A 143 643 94 HOH HOH . F 6 HOH A 144 644 7 HOH HOH . F 6 HOH A 145 645 217 HOH HOH . F 6 HOH A 146 646 22 HOH HOH . F 6 HOH A 147 647 142 HOH HOH . F 6 HOH A 148 648 111 HOH HOH . F 6 HOH A 149 649 84 HOH HOH . F 6 HOH A 150 650 70 HOH HOH . F 6 HOH A 151 651 3 HOH HOH . F 6 HOH A 152 652 155 HOH HOH . F 6 HOH A 153 653 57 HOH HOH . F 6 HOH A 154 654 218 HOH HOH . F 6 HOH A 155 655 161 HOH HOH . F 6 HOH A 156 656 154 HOH HOH . F 6 HOH A 157 657 112 HOH HOH . F 6 HOH A 158 658 141 HOH HOH . F 6 HOH A 159 659 184 HOH HOH . F 6 HOH A 160 660 101 HOH HOH . F 6 HOH A 161 661 118 HOH HOH . F 6 HOH A 162 662 208 HOH HOH . F 6 HOH A 163 663 81 HOH HOH . F 6 HOH A 164 664 42 HOH HOH . F 6 HOH A 165 665 144 HOH HOH . F 6 HOH A 166 666 185 HOH HOH . F 6 HOH A 167 667 24 HOH HOH . F 6 HOH A 168 668 158 HOH HOH . F 6 HOH A 169 669 216 HOH HOH . F 6 HOH A 170 670 211 HOH HOH . F 6 HOH A 171 671 23 HOH HOH . F 6 HOH A 172 672 122 HOH HOH . F 6 HOH A 173 673 229 HOH HOH . F 6 HOH A 174 674 41 HOH HOH . F 6 HOH A 175 675 223 HOH HOH . F 6 HOH A 176 676 129 HOH HOH . F 6 HOH A 177 677 176 HOH HOH . F 6 HOH A 178 678 162 HOH HOH . F 6 HOH A 179 679 235 HOH HOH . F 6 HOH A 180 680 68 HOH HOH . F 6 HOH A 181 681 196 HOH HOH . F 6 HOH A 182 682 167 HOH HOH . F 6 HOH A 183 683 164 HOH HOH . F 6 HOH A 184 684 125 HOH HOH . F 6 HOH A 185 685 127 HOH HOH . F 6 HOH A 186 686 203 HOH HOH . F 6 HOH A 187 687 151 HOH HOH . F 6 HOH A 188 688 180 HOH HOH . F 6 HOH A 189 689 205 HOH HOH . F 6 HOH A 190 690 92 HOH HOH . F 6 HOH A 191 691 198 HOH HOH . F 6 HOH A 192 692 103 HOH HOH . F 6 HOH A 193 693 80 HOH HOH . F 6 HOH A 194 694 82 HOH HOH . F 6 HOH A 195 695 177 HOH HOH . F 6 HOH A 196 696 165 HOH HOH . F 6 HOH A 197 697 120 HOH HOH . F 6 HOH A 198 698 143 HOH HOH . F 6 HOH A 199 699 169 HOH HOH . F 6 HOH A 200 700 89 HOH HOH . F 6 HOH A 201 701 194 HOH HOH . F 6 HOH A 202 702 90 HOH HOH . F 6 HOH A 203 703 74 HOH HOH . F 6 HOH A 204 704 207 HOH HOH . F 6 HOH A 205 705 134 HOH HOH . F 6 HOH A 206 706 197 HOH HOH . F 6 HOH A 207 707 236 HOH HOH . F 6 HOH A 208 708 95 HOH HOH . F 6 HOH A 209 709 147 HOH HOH . F 6 HOH A 210 710 174 HOH HOH . F 6 HOH A 211 711 179 HOH HOH . F 6 HOH A 212 712 187 HOH HOH . F 6 HOH A 213 713 212 HOH HOH . F 6 HOH A 214 714 110 HOH HOH . F 6 HOH A 215 715 230 HOH HOH . F 6 HOH A 216 716 214 HOH HOH . F 6 HOH A 217 717 114 HOH HOH . F 6 HOH A 218 718 228 HOH HOH . F 6 HOH A 219 719 200 HOH HOH . F 6 HOH A 220 720 192 HOH HOH . F 6 HOH A 221 721 188 HOH HOH . F 6 HOH A 222 722 113 HOH HOH . F 6 HOH A 223 723 156 HOH HOH . F 6 HOH A 224 724 225 HOH HOH . F 6 HOH A 225 725 222 HOH HOH . F 6 HOH A 226 726 178 HOH HOH . F 6 HOH A 227 727 181 HOH HOH . F 6 HOH A 228 728 9 HOH HOH . F 6 HOH A 229 729 175 HOH HOH . F 6 HOH A 230 730 215 HOH HOH . F 6 HOH A 231 731 163 HOH HOH . F 6 HOH A 232 732 189 HOH HOH . F 6 HOH A 233 733 170 HOH HOH . F 6 HOH A 234 734 60 HOH HOH . F 6 HOH A 235 735 152 HOH HOH . F 6 HOH A 236 736 186 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 -12 -32.287 -5.791 0.73 33.21 ? C1 GOL 402 A 1 HETATM 2 O O1 GOL . . . C 3 -10.765 -32.066 -6.442 0.73 36.57 ? O1 GOL 402 A 1 HETATM 3 C C2 GOL . . . C 3 -13.147 -32.021 -6.804 0.73 31.7 ? C2 GOL 402 A 1 HETATM 4 O O2 GOL . . . C 3 -13.396 -33.086 -7.624 0.73 32.65 ? O2 GOL 402 A 1 HETATM 5 C C3 GOL . . . C 3 -14.414 -31.675 -6.024 0.73 32.24 ? C3 GOL 402 A 1 HETATM 6 O O3 GOL . . . C 3 -14.152 -30.651 -5.103 0.73 30.42 ? O3 GOL 402 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #