data_8AWL # _model_server_result.job_id l2KwNSIcZbRD8I3ZZ6UMjA _model_server_result.datetime_utc '2025-07-04 19:34:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8awl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 8AWL # _exptl.entry_id 8AWL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.124 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CITRIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8AWL _cell.length_a 54.382 _cell.length_b 70.388 _cell.length_c 129.942 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8AWL _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 H CYS 23 1_555 A SG CYS 96 H CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? disulf ? disulf2 A SG CYS 147 H CYS 155 1_555 A SG CYS 203 H CYS 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? disulf ? disulf3 B SG CYS 22 L CYS 23 1_555 B SG CYS 87 L CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? disulf ? disulf4 B SG CYS 136 L CYS 153 1_555 B SG CYS 195 L CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? # _chem_comp.formula 'C6 H8 O7' _chem_comp.formula_weight 192.124 _chem_comp.id CIT _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 CIT doub 70 n n C1 O2 CIT sing 71 n n C1 C2 CIT sing 72 n n O2 HO2 CIT sing 73 n n C2 C3 CIT sing 74 n n C2 H21 CIT sing 75 n n C2 H22 CIT sing 76 n n C3 O7 CIT sing 77 n n C3 C4 CIT sing 78 n n C3 C6 CIT sing 79 n n O7 HO7 CIT sing 80 n n C4 C5 CIT sing 81 n n C4 H41 CIT sing 82 n n C4 H42 CIT sing 83 n n C5 O3 CIT doub 84 n n C5 O4 CIT sing 85 n n O4 HO4 CIT sing 86 n n C6 O5 CIT doub 87 n n C6 O6 CIT sing 88 n n O6 HO6 CIT sing 89 n n # _atom_sites.entry_id 8AWL _atom_sites.fract_transf_matrix[1][1] 0.018388 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014207 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007696 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CIT H 1 301 301 CIT CIT . D 4 HOH H 1 401 144 HOH HOH . D 4 HOH H 2 402 149 HOH HOH . D 4 HOH H 3 403 43 HOH HOH . D 4 HOH H 4 404 188 HOH HOH . D 4 HOH H 5 405 36 HOH HOH . D 4 HOH H 6 406 16 HOH HOH . D 4 HOH H 7 407 153 HOH HOH . D 4 HOH H 8 408 180 HOH HOH . D 4 HOH H 9 409 70 HOH HOH . D 4 HOH H 10 410 106 HOH HOH . D 4 HOH H 11 411 94 HOH HOH . D 4 HOH H 12 412 119 HOH HOH . D 4 HOH H 13 413 57 HOH HOH . D 4 HOH H 14 414 143 HOH HOH . D 4 HOH H 15 415 62 HOH HOH . D 4 HOH H 16 416 127 HOH HOH . D 4 HOH H 17 417 99 HOH HOH . D 4 HOH H 18 418 116 HOH HOH . D 4 HOH H 19 419 140 HOH HOH . D 4 HOH H 20 420 162 HOH HOH . D 4 HOH H 21 421 81 HOH HOH . D 4 HOH H 22 422 47 HOH HOH . D 4 HOH H 23 423 37 HOH HOH . D 4 HOH H 24 424 100 HOH HOH . D 4 HOH H 25 425 112 HOH HOH . D 4 HOH H 26 426 15 HOH HOH . D 4 HOH H 27 427 69 HOH HOH . D 4 HOH H 28 428 32 HOH HOH . D 4 HOH H 29 429 177 HOH HOH . D 4 HOH H 30 430 128 HOH HOH . D 4 HOH H 31 431 26 HOH HOH . D 4 HOH H 32 432 56 HOH HOH . D 4 HOH H 33 433 96 HOH HOH . D 4 HOH H 34 434 44 HOH HOH . D 4 HOH H 35 435 147 HOH HOH . D 4 HOH H 36 436 59 HOH HOH . D 4 HOH H 37 437 63 HOH HOH . D 4 HOH H 38 438 151 HOH HOH . D 4 HOH H 39 439 65 HOH HOH . D 4 HOH H 40 440 39 HOH HOH . D 4 HOH H 41 441 93 HOH HOH . D 4 HOH H 42 442 28 HOH HOH . D 4 HOH H 43 443 105 HOH HOH . D 4 HOH H 44 444 132 HOH HOH . D 4 HOH H 45 445 45 HOH HOH . D 4 HOH H 46 446 129 HOH HOH . D 4 HOH H 47 447 91 HOH HOH . D 4 HOH H 48 448 84 HOH HOH . D 4 HOH H 49 449 77 HOH HOH . D 4 HOH H 50 450 156 HOH HOH . D 4 HOH H 51 451 189 HOH HOH . D 4 HOH H 52 452 24 HOH HOH . D 4 HOH H 53 453 13 HOH HOH . D 4 HOH H 54 454 164 HOH HOH . D 4 HOH H 55 455 187 HOH HOH . D 4 HOH H 56 456 173 HOH HOH . D 4 HOH H 57 457 139 HOH HOH . D 4 HOH H 58 458 66 HOH HOH . D 4 HOH H 59 459 104 HOH HOH . D 4 HOH H 60 460 185 HOH HOH . D 4 HOH H 61 461 98 HOH HOH . D 4 HOH H 62 462 97 HOH HOH . D 4 HOH H 63 463 152 HOH HOH . D 4 HOH H 64 464 31 HOH HOH . D 4 HOH H 65 465 95 HOH HOH . D 4 HOH H 66 466 5 HOH HOH . D 4 HOH H 67 467 4 HOH HOH . D 4 HOH H 68 468 53 HOH HOH . D 4 HOH H 69 469 111 HOH HOH . D 4 HOH H 70 470 125 HOH HOH . D 4 HOH H 71 471 182 HOH HOH . D 4 HOH H 72 472 10 HOH HOH . D 4 HOH H 73 473 138 HOH HOH . D 4 HOH H 74 474 92 HOH HOH . D 4 HOH H 75 475 27 HOH HOH . D 4 HOH H 76 476 38 HOH HOH . D 4 HOH H 77 477 186 HOH HOH . D 4 HOH H 78 478 123 HOH HOH . D 4 HOH H 79 479 40 HOH HOH . D 4 HOH H 80 480 49 HOH HOH . D 4 HOH H 81 481 171 HOH HOH . D 4 HOH H 82 482 154 HOH HOH . D 4 HOH H 83 483 183 HOH HOH . D 4 HOH H 84 484 33 HOH HOH . D 4 HOH H 85 485 76 HOH HOH . D 4 HOH H 86 486 90 HOH HOH . D 4 HOH H 87 487 54 HOH HOH . D 4 HOH H 88 488 172 HOH HOH . D 4 HOH H 89 489 89 HOH HOH . D 4 HOH H 90 490 158 HOH HOH . D 4 HOH H 91 491 159 HOH HOH . D 4 HOH H 92 492 108 HOH HOH . D 4 HOH H 93 493 131 HOH HOH . D 4 HOH H 94 494 157 HOH HOH . D 4 HOH H 95 495 87 HOH HOH . D 4 HOH H 96 496 168 HOH HOH . D 4 HOH H 97 497 130 HOH HOH . D 4 HOH H 98 498 2 HOH HOH . D 4 HOH H 99 499 101 HOH HOH . D 4 HOH H 100 500 200 HOH HOH . D 4 HOH H 101 501 196 HOH HOH . D 4 HOH H 102 502 199 HOH HOH . D 4 HOH H 103 503 198 HOH HOH . D 4 HOH H 104 504 175 HOH HOH . D 4 HOH H 105 505 201 HOH HOH . D 4 HOH H 106 506 192 HOH HOH . D 4 HOH H 107 507 194 HOH HOH . D 4 HOH H 108 508 174 HOH HOH . D 4 HOH H 109 509 122 HOH HOH . D 4 HOH H 110 510 181 HOH HOH . D 4 HOH H 111 511 169 HOH HOH . D 4 HOH H 112 512 193 HOH HOH . D 4 HOH H 113 513 137 HOH HOH . E 4 HOH L 1 301 64 HOH HOH . E 4 HOH L 2 302 136 HOH HOH . E 4 HOH L 3 303 117 HOH HOH . E 4 HOH L 4 304 35 HOH HOH . E 4 HOH L 5 305 150 HOH HOH . E 4 HOH L 6 306 55 HOH HOH . E 4 HOH L 7 307 161 HOH HOH . E 4 HOH L 8 308 167 HOH HOH . E 4 HOH L 9 309 48 HOH HOH . E 4 HOH L 10 310 51 HOH HOH . E 4 HOH L 11 311 179 HOH HOH . E 4 HOH L 12 312 52 HOH HOH . E 4 HOH L 13 313 18 HOH HOH . E 4 HOH L 14 314 6 HOH HOH . E 4 HOH L 15 315 148 HOH HOH . E 4 HOH L 16 316 86 HOH HOH . E 4 HOH L 17 317 146 HOH HOH . E 4 HOH L 18 318 67 HOH HOH . E 4 HOH L 19 319 3 HOH HOH . E 4 HOH L 20 320 103 HOH HOH . E 4 HOH L 21 321 155 HOH HOH . E 4 HOH L 22 322 133 HOH HOH . E 4 HOH L 23 323 121 HOH HOH . E 4 HOH L 24 324 14 HOH HOH . E 4 HOH L 25 325 124 HOH HOH . E 4 HOH L 26 326 113 HOH HOH . E 4 HOH L 27 327 126 HOH HOH . E 4 HOH L 28 328 34 HOH HOH . E 4 HOH L 29 329 82 HOH HOH . E 4 HOH L 30 330 75 HOH HOH . E 4 HOH L 31 331 114 HOH HOH . E 4 HOH L 32 332 22 HOH HOH . E 4 HOH L 33 333 178 HOH HOH . E 4 HOH L 34 334 68 HOH HOH . E 4 HOH L 35 335 176 HOH HOH . E 4 HOH L 36 336 8 HOH HOH . E 4 HOH L 37 337 78 HOH HOH . E 4 HOH L 38 338 74 HOH HOH . E 4 HOH L 39 339 12 HOH HOH . E 4 HOH L 40 340 23 HOH HOH . E 4 HOH L 41 341 110 HOH HOH . E 4 HOH L 42 342 135 HOH HOH . E 4 HOH L 43 343 9 HOH HOH . E 4 HOH L 44 344 115 HOH HOH . E 4 HOH L 45 345 134 HOH HOH . E 4 HOH L 46 346 30 HOH HOH . E 4 HOH L 47 347 7 HOH HOH . E 4 HOH L 48 348 72 HOH HOH . E 4 HOH L 49 349 79 HOH HOH . E 4 HOH L 50 350 11 HOH HOH . E 4 HOH L 51 351 29 HOH HOH . E 4 HOH L 52 352 41 HOH HOH . E 4 HOH L 53 353 120 HOH HOH . E 4 HOH L 54 354 165 HOH HOH . E 4 HOH L 55 355 142 HOH HOH . E 4 HOH L 56 356 20 HOH HOH . E 4 HOH L 57 357 85 HOH HOH . E 4 HOH L 58 358 58 HOH HOH . E 4 HOH L 59 359 71 HOH HOH . E 4 HOH L 60 360 166 HOH HOH . E 4 HOH L 61 361 25 HOH HOH . E 4 HOH L 62 362 145 HOH HOH . E 4 HOH L 63 363 73 HOH HOH . E 4 HOH L 64 364 19 HOH HOH . E 4 HOH L 65 365 60 HOH HOH . E 4 HOH L 66 366 83 HOH HOH . E 4 HOH L 67 367 191 HOH HOH . E 4 HOH L 68 368 190 HOH HOH . E 4 HOH L 69 369 118 HOH HOH . E 4 HOH L 70 370 141 HOH HOH . E 4 HOH L 71 371 160 HOH HOH . E 4 HOH L 72 372 170 HOH HOH . E 4 HOH L 73 373 80 HOH HOH . E 4 HOH L 74 374 21 HOH HOH . E 4 HOH L 75 375 46 HOH HOH . E 4 HOH L 76 376 163 HOH HOH . E 4 HOH L 77 377 102 HOH HOH . E 4 HOH L 78 378 88 HOH HOH . E 4 HOH L 79 379 61 HOH HOH . E 4 HOH L 80 380 1 HOH HOH . E 4 HOH L 81 381 107 HOH HOH . E 4 HOH L 82 382 50 HOH HOH . E 4 HOH L 83 383 109 HOH HOH . E 4 HOH L 84 384 42 HOH HOH . E 4 HOH L 85 385 184 HOH HOH . E 4 HOH L 86 386 195 HOH HOH . E 4 HOH L 87 387 17 HOH HOH . E 4 HOH L 88 388 197 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CIT . . . C 3 -20.691 -28.659 17.5 1 87.43 ? C1 CIT 301 H 1 HETATM 2 O O1 CIT . . . C 3 -21.141 -28.451 16.348 1 88.02 ? O1 CIT 301 H 1 HETATM 3 O O2 CIT . . . C 3 -19.467 -28.502 17.691 1 84.23 ? O2 CIT 301 H 1 HETATM 4 C C2 CIT . . . C 3 -21.579 -29.062 18.666 1 82.98 ? C2 CIT 301 H 1 HETATM 5 C C3 CIT . . . C 3 -22.25 -30.43 18.506 1 82.62 ? C3 CIT 301 H 1 HETATM 6 O O7 CIT . . . C 3 -21.286 -31.469 18.843 1 83.35 ? O7 CIT 301 H 1 HETATM 7 C C4 CIT . . . C 3 -23.454 -30.521 19.45 1 81.51 ? C4 CIT 301 H 1 HETATM 8 C C5 CIT . . . C 3 -23.231 -31.515 20.574 1 83.2 ? C5 CIT 301 H 1 HETATM 9 O O3 CIT . . . C 3 -23.431 -32.745 20.375 1 82.2 ? O3 CIT 301 H 1 HETATM 10 O O4 CIT . . . C 3 -22.871 -31.118 21.713 1 81.67 ? O4 CIT 301 H 1 HETATM 11 C C6 CIT . . . C 3 -22.727 -30.614 17.065 1 82.21 ? C6 CIT 301 H 1 HETATM 12 O O5 CIT . . . C 3 -22.116 -31.35 16.245 1 84.32 ? O5 CIT 301 H 1 HETATM 13 O O6 CIT . . . C 3 -23.74 -29.989 16.681 1 81.75 ? O6 CIT 301 H 1 HETATM 14 H H21 CIT . . . C 3 -20.976 -29.075 19.574 1 99.63 ? H21 CIT 301 H 1 HETATM 15 H H22 CIT . . . C 3 -22.355 -28.307 18.789 1 99.63 ? H22 CIT 301 H 1 HETATM 16 H HO7 CIT . . . C 3 -21.425 -32.245 18.261 1 100.07 ? HO7 CIT 301 H 1 HETATM 17 H H41 CIT . . . C 3 -24.333 -30.819 18.879 1 97.87 ? H41 CIT 301 H 1 HETATM 18 H H42 CIT . . . C 3 -23.649 -29.538 19.876 1 97.87 ? H42 CIT 301 H 1 # _model_server_stats.io_time_ms 87 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 476 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 18 #