data_8AX2 # _model_server_result.job_id ysiaKgPzvQ1BX98IbkbpIQ _model_server_result.datetime_utc '2024-11-24 19:49:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ax2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 8AX2 # _exptl.entry_id 8AX2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8AX2 _cell.length_a 50.615 _cell.length_b 104.548 _cell.length_c 108.092 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8AX2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B O GLY 145 B GLY 145 1_555 I CA CA . B CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? metalc ? metalc2 I CA CA . B CA 304 1_555 K O HOH . B HOH 464 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.595 ? metalc ? metalc3 I CA CA . B CA 304 1_555 K O HOH . B HOH 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 8AX2 _atom_sites.fract_transf_matrix[1][1] 0.019757 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009565 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009251 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 OS A 1 301 2 OS OS . D 3 GOL A 1 302 1 GOL GOL . E 4 GSH A 1 303 1 GSH GSH . F 2 OS B 1 301 1 OS OS . G 3 GOL B 1 302 2 GOL GOL . H 4 GSH B 1 303 2 GSH GSH . I 5 CA B 1 304 1 CA CA . J 6 HOH A 1 401 222 HOH HOH . J 6 HOH A 2 402 117 HOH HOH . J 6 HOH A 3 403 101 HOH HOH . J 6 HOH A 4 404 61 HOH HOH . J 6 HOH A 5 405 45 HOH HOH . J 6 HOH A 6 406 203 HOH HOH . J 6 HOH A 7 407 244 HOH HOH . J 6 HOH A 8 408 78 HOH HOH . J 6 HOH A 9 409 150 HOH HOH . J 6 HOH A 10 410 10 HOH HOH . J 6 HOH A 11 411 55 HOH HOH . J 6 HOH A 12 412 89 HOH HOH . J 6 HOH A 13 413 39 HOH HOH . J 6 HOH A 14 414 173 HOH HOH . J 6 HOH A 15 415 48 HOH HOH . J 6 HOH A 16 416 145 HOH HOH . J 6 HOH A 17 417 104 HOH HOH . J 6 HOH A 18 418 133 HOH HOH . J 6 HOH A 19 419 94 HOH HOH . J 6 HOH A 20 420 126 HOH HOH . J 6 HOH A 21 421 25 HOH HOH . J 6 HOH A 22 422 172 HOH HOH . J 6 HOH A 23 423 271 HOH HOH . J 6 HOH A 24 424 137 HOH HOH . J 6 HOH A 25 425 90 HOH HOH . J 6 HOH A 26 426 69 HOH HOH . J 6 HOH A 27 427 249 HOH HOH . J 6 HOH A 28 428 22 HOH HOH . J 6 HOH A 29 429 214 HOH HOH . J 6 HOH A 30 430 64 HOH HOH . J 6 HOH A 31 431 211 HOH HOH . J 6 HOH A 32 432 156 HOH HOH . J 6 HOH A 33 433 129 HOH HOH . J 6 HOH A 34 434 263 HOH HOH . J 6 HOH A 35 435 242 HOH HOH . J 6 HOH A 36 436 68 HOH HOH . J 6 HOH A 37 437 213 HOH HOH . J 6 HOH A 38 438 60 HOH HOH . J 6 HOH A 39 439 185 HOH HOH . J 6 HOH A 40 440 268 HOH HOH . J 6 HOH A 41 441 236 HOH HOH . J 6 HOH A 42 442 91 HOH HOH . J 6 HOH A 43 443 189 HOH HOH . J 6 HOH A 44 444 240 HOH HOH . J 6 HOH A 45 445 88 HOH HOH . J 6 HOH A 46 446 73 HOH HOH . J 6 HOH A 47 447 19 HOH HOH . J 6 HOH A 48 448 75 HOH HOH . J 6 HOH A 49 449 274 HOH HOH . J 6 HOH A 50 450 63 HOH HOH . J 6 HOH A 51 451 235 HOH HOH . J 6 HOH A 52 452 97 HOH HOH . J 6 HOH A 53 453 6 HOH HOH . J 6 HOH A 54 454 262 HOH HOH . J 6 HOH A 55 455 215 HOH HOH . J 6 HOH A 56 456 154 HOH HOH . J 6 HOH A 57 457 159 HOH HOH . J 6 HOH A 58 458 128 HOH HOH . J 6 HOH A 59 459 49 HOH HOH . J 6 HOH A 60 460 228 HOH HOH . J 6 HOH A 61 461 221 HOH HOH . J 6 HOH A 62 462 256 HOH HOH . J 6 HOH A 63 463 181 HOH HOH . J 6 HOH A 64 464 26 HOH HOH . J 6 HOH A 65 465 119 HOH HOH . J 6 HOH A 66 466 162 HOH HOH . J 6 HOH A 67 467 155 HOH HOH . J 6 HOH A 68 468 253 HOH HOH . J 6 HOH A 69 469 153 HOH HOH . J 6 HOH A 70 470 234 HOH HOH . J 6 HOH A 71 471 108 HOH HOH . J 6 HOH A 72 472 148 HOH HOH . J 6 HOH A 73 473 34 HOH HOH . J 6 HOH A 74 474 243 HOH HOH . J 6 HOH A 75 475 267 HOH HOH . J 6 HOH A 76 476 123 HOH HOH . J 6 HOH A 77 477 139 HOH HOH . J 6 HOH A 78 478 210 HOH HOH . J 6 HOH A 79 479 46 HOH HOH . J 6 HOH A 80 480 35 HOH HOH . J 6 HOH A 81 481 27 HOH HOH . J 6 HOH A 82 482 57 HOH HOH . J 6 HOH A 83 483 206 HOH HOH . J 6 HOH A 84 484 13 HOH HOH . J 6 HOH A 85 485 54 HOH HOH . J 6 HOH A 86 486 56 HOH HOH . J 6 HOH A 87 487 136 HOH HOH . J 6 HOH A 88 488 266 HOH HOH . J 6 HOH A 89 489 245 HOH HOH . J 6 HOH A 90 490 11 HOH HOH . J 6 HOH A 91 491 225 HOH HOH . J 6 HOH A 92 492 106 HOH HOH . J 6 HOH A 93 493 31 HOH HOH . J 6 HOH A 94 494 134 HOH HOH . J 6 HOH A 95 495 130 HOH HOH . J 6 HOH A 96 496 96 HOH HOH . J 6 HOH A 97 497 180 HOH HOH . J 6 HOH A 98 498 23 HOH HOH . J 6 HOH A 99 499 12 HOH HOH . J 6 HOH A 100 500 146 HOH HOH . J 6 HOH A 101 501 257 HOH HOH . J 6 HOH A 102 502 14 HOH HOH . J 6 HOH A 103 503 177 HOH HOH . J 6 HOH A 104 504 127 HOH HOH . J 6 HOH A 105 505 232 HOH HOH . J 6 HOH A 106 506 219 HOH HOH . J 6 HOH A 107 507 239 HOH HOH . J 6 HOH A 108 508 254 HOH HOH . J 6 HOH A 109 509 265 HOH HOH . J 6 HOH A 110 510 224 HOH HOH . J 6 HOH A 111 511 113 HOH HOH . J 6 HOH A 112 512 193 HOH HOH . J 6 HOH A 113 513 122 HOH HOH . J 6 HOH A 114 514 270 HOH HOH . J 6 HOH A 115 515 24 HOH HOH . J 6 HOH A 116 516 195 HOH HOH . J 6 HOH A 117 517 164 HOH HOH . J 6 HOH A 118 518 229 HOH HOH . J 6 HOH A 119 519 288 HOH HOH . J 6 HOH A 120 520 284 HOH HOH . J 6 HOH A 121 521 282 HOH HOH . J 6 HOH A 122 522 287 HOH HOH . J 6 HOH A 123 523 279 HOH HOH . J 6 HOH A 124 524 114 HOH HOH . J 6 HOH A 125 525 198 HOH HOH . K 6 HOH B 1 401 277 HOH HOH . K 6 HOH B 2 402 209 HOH HOH . K 6 HOH B 3 403 259 HOH HOH . K 6 HOH B 4 404 124 HOH HOH . K 6 HOH B 5 405 226 HOH HOH . K 6 HOH B 6 406 36 HOH HOH . K 6 HOH B 7 407 275 HOH HOH . K 6 HOH B 8 408 188 HOH HOH . K 6 HOH B 9 409 248 HOH HOH . K 6 HOH B 10 410 252 HOH HOH . K 6 HOH B 11 411 115 HOH HOH . K 6 HOH B 12 412 4 HOH HOH . K 6 HOH B 13 413 41 HOH HOH . K 6 HOH B 14 414 32 HOH HOH . K 6 HOH B 15 415 161 HOH HOH . K 6 HOH B 16 416 269 HOH HOH . K 6 HOH B 17 417 192 HOH HOH . K 6 HOH B 18 418 250 HOH HOH . K 6 HOH B 19 419 38 HOH HOH . K 6 HOH B 20 420 20 HOH HOH . K 6 HOH B 21 421 147 HOH HOH . K 6 HOH B 22 422 152 HOH HOH . K 6 HOH B 23 423 217 HOH HOH . K 6 HOH B 24 424 47 HOH HOH . K 6 HOH B 25 425 121 HOH HOH . K 6 HOH B 26 426 70 HOH HOH . K 6 HOH B 27 427 50 HOH HOH . K 6 HOH B 28 428 52 HOH HOH . K 6 HOH B 29 429 15 HOH HOH . K 6 HOH B 30 430 167 HOH HOH . K 6 HOH B 31 431 33 HOH HOH . K 6 HOH B 32 432 241 HOH HOH . K 6 HOH B 33 433 135 HOH HOH . K 6 HOH B 34 434 100 HOH HOH . K 6 HOH B 35 435 151 HOH HOH . K 6 HOH B 36 436 264 HOH HOH . K 6 HOH B 37 437 158 HOH HOH . K 6 HOH B 38 438 231 HOH HOH . K 6 HOH B 39 439 51 HOH HOH . K 6 HOH B 40 440 142 HOH HOH . K 6 HOH B 41 441 43 HOH HOH . K 6 HOH B 42 442 107 HOH HOH . K 6 HOH B 43 443 157 HOH HOH . K 6 HOH B 44 444 179 HOH HOH . K 6 HOH B 45 445 140 HOH HOH . K 6 HOH B 46 446 76 HOH HOH . K 6 HOH B 47 447 7 HOH HOH . K 6 HOH B 48 448 62 HOH HOH . K 6 HOH B 49 449 37 HOH HOH . K 6 HOH B 50 450 174 HOH HOH . K 6 HOH B 51 451 9 HOH HOH . K 6 HOH B 52 452 190 HOH HOH . K 6 HOH B 53 453 175 HOH HOH . K 6 HOH B 54 454 237 HOH HOH . K 6 HOH B 55 455 143 HOH HOH . K 6 HOH B 56 456 40 HOH HOH . K 6 HOH B 57 457 93 HOH HOH . K 6 HOH B 58 458 21 HOH HOH . K 6 HOH B 59 459 83 HOH HOH . K 6 HOH B 60 460 212 HOH HOH . K 6 HOH B 61 461 95 HOH HOH . K 6 HOH B 62 462 53 HOH HOH . K 6 HOH B 63 463 223 HOH HOH . K 6 HOH B 64 464 116 HOH HOH . K 6 HOH B 65 465 138 HOH HOH . K 6 HOH B 66 466 184 HOH HOH . K 6 HOH B 67 467 111 HOH HOH . K 6 HOH B 68 468 183 HOH HOH . K 6 HOH B 69 469 255 HOH HOH . K 6 HOH B 70 470 18 HOH HOH . K 6 HOH B 71 471 141 HOH HOH . K 6 HOH B 72 472 74 HOH HOH . K 6 HOH B 73 473 79 HOH HOH . K 6 HOH B 74 474 86 HOH HOH . K 6 HOH B 75 475 176 HOH HOH . K 6 HOH B 76 476 30 HOH HOH . K 6 HOH B 77 477 103 HOH HOH . K 6 HOH B 78 478 120 HOH HOH . K 6 HOH B 79 479 105 HOH HOH . K 6 HOH B 80 480 17 HOH HOH . K 6 HOH B 81 481 131 HOH HOH . K 6 HOH B 82 482 276 HOH HOH . K 6 HOH B 83 483 102 HOH HOH . K 6 HOH B 84 484 58 HOH HOH . K 6 HOH B 85 485 80 HOH HOH . K 6 HOH B 86 486 160 HOH HOH . K 6 HOH B 87 487 207 HOH HOH . K 6 HOH B 88 488 110 HOH HOH . K 6 HOH B 89 489 165 HOH HOH . K 6 HOH B 90 490 186 HOH HOH . K 6 HOH B 91 491 178 HOH HOH . K 6 HOH B 92 492 92 HOH HOH . K 6 HOH B 93 493 163 HOH HOH . K 6 HOH B 94 494 71 HOH HOH . K 6 HOH B 95 495 125 HOH HOH . K 6 HOH B 96 496 220 HOH HOH . K 6 HOH B 97 497 42 HOH HOH . K 6 HOH B 98 498 16 HOH HOH . K 6 HOH B 99 499 66 HOH HOH . K 6 HOH B 100 500 85 HOH HOH . K 6 HOH B 101 501 29 HOH HOH . K 6 HOH B 102 502 238 HOH HOH . K 6 HOH B 103 503 8 HOH HOH . K 6 HOH B 104 504 182 HOH HOH . K 6 HOH B 105 505 208 HOH HOH . K 6 HOH B 106 506 260 HOH HOH . K 6 HOH B 107 507 144 HOH HOH . K 6 HOH B 108 508 109 HOH HOH . K 6 HOH B 109 509 28 HOH HOH . K 6 HOH B 110 510 81 HOH HOH . K 6 HOH B 111 511 44 HOH HOH . K 6 HOH B 112 512 204 HOH HOH . K 6 HOH B 113 513 216 HOH HOH . K 6 HOH B 114 514 72 HOH HOH . K 6 HOH B 115 515 171 HOH HOH . K 6 HOH B 116 516 218 HOH HOH . K 6 HOH B 117 517 227 HOH HOH . K 6 HOH B 118 518 251 HOH HOH . K 6 HOH B 119 519 191 HOH HOH . K 6 HOH B 120 520 67 HOH HOH . K 6 HOH B 121 521 196 HOH HOH . K 6 HOH B 122 522 118 HOH HOH . K 6 HOH B 123 523 98 HOH HOH . K 6 HOH B 124 524 280 HOH HOH . K 6 HOH B 125 525 233 HOH HOH . K 6 HOH B 126 526 247 HOH HOH . K 6 HOH B 127 527 82 HOH HOH . K 6 HOH B 128 528 281 HOH HOH . K 6 HOH B 129 529 112 HOH HOH . K 6 HOH B 130 530 199 HOH HOH . K 6 HOH B 131 531 132 HOH HOH . K 6 HOH B 132 532 187 HOH HOH . K 6 HOH B 133 533 77 HOH HOH . K 6 HOH B 134 534 278 HOH HOH . K 6 HOH B 135 535 149 HOH HOH . K 6 HOH B 136 536 197 HOH HOH . K 6 HOH B 137 537 65 HOH HOH . K 6 HOH B 138 538 286 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 3 7.174 24.711 7.858 1 26.35 ? C1 GOL 302 A 1 HETATM 2 O O1 GOL . . . D 3 7.132 23.37 7.413 1 24.66 ? O1 GOL 302 A 1 HETATM 3 C C2 GOL . . . D 3 8.445 25.398 7.39 1 32.14 ? C2 GOL 302 A 1 HETATM 4 O O2 GOL . . . D 3 8.619 25.293 5.998 1 28.87 ? O2 GOL 302 A 1 HETATM 5 C C3 GOL . . . D 3 8.397 26.857 7.812 1 29.56 ? C3 GOL 302 A 1 HETATM 6 O O3 GOL . . . D 3 9.442 27.038 8.735 1 33.13 ? O3 GOL 302 A 1 HETATM 7 H H11 GOL . . . D 3 6.308 25.25 7.474 1 31.62 ? H11 GOL 302 A 1 HETATM 8 H H12 GOL . . . D 3 7.128 24.735 8.947 1 31.62 ? H12 GOL 302 A 1 HETATM 9 H HO1 GOL . . . D 3 6.338 22.929 7.781 1 29.59 ? HO1 GOL 302 A 1 HETATM 10 H H2 GOL . . . D 3 9.289 24.927 7.894 1 38.56 ? H2 GOL 302 A 1 HETATM 11 H HO2 GOL . . . D 3 7.877 25.742 5.541 1 34.64 ? HO2 GOL 302 A 1 HETATM 12 H H31 GOL . . . D 3 8.537 27.507 6.948 1 35.47 ? H31 GOL 302 A 1 HETATM 13 H H32 GOL . . . D 3 7.437 27.088 8.274 1 35.47 ? H32 GOL 302 A 1 HETATM 14 H HO3 GOL . . . D 3 9.368 26.369 9.448 1 39.76 ? HO3 GOL 302 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 212 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #