data_8AXF # _model_server_result.job_id PaOK5YRsx5OK2tp59HSgIA _model_server_result.datetime_utc '2025-02-28 15:04:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8axf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":101}' # _entry.id 8AXF # _exptl.entry_id 8AXF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8AXF _cell.length_a 53.17 _cell.length_b 151.82 _cell.length_c 169.57 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8AXF _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 G N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 83 C CYS 82 1_555 D SG CYS 88 C CYS 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf2 E SG CYS 83 B CYS 82 1_555 E SG CYS 88 B CYS 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? metalc ? metalc1 A OE1 GLN 183 A GLN 182 1_555 H MG MG . Q MG 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.699 ? metalc ? metalc2 B OP1 U 9 Q U 9 1_555 H MG MG . Q MG 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc3 B OP2 U 10 Q U 10 1_555 H MG MG . Q MG 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.862 ? metalc ? metalc4 B OP1 U 19 Q U 19 1_555 G MG MG . Q MG 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.977 ? metalc ? metalc5 B OP1 U 30 Q U 30 1_555 F MG MG . Q MG 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc6 B OP2 U 31 Q U 31 1_555 F MG MG . Q MG 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.822 ? metalc ? metalc7 F MG MG . Q MG 101 1_555 C OE1 GLN 183 D GLN 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.641 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8AXF _atom_sites.fract_transf_matrix[1][1] 0.018808 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006587 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005897 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 3 MG Q 1 101 1 MG MG . G 3 MG Q 1 102 2 MG MG . H 3 MG Q 1 103 3 MG MG . I 4 GOL B 1 401 401 GOL GOL . J 5 HOH A 1 401 219 HOH HOH . J 5 HOH A 2 402 244 HOH HOH . J 5 HOH A 3 403 149 HOH HOH . J 5 HOH A 4 404 224 HOH HOH . J 5 HOH A 5 405 203 HOH HOH . J 5 HOH A 6 406 5 HOH HOH . J 5 HOH A 7 407 72 HOH HOH . J 5 HOH A 8 408 2 HOH HOH . J 5 HOH A 9 409 165 HOH HOH . J 5 HOH A 10 410 241 HOH HOH . J 5 HOH A 11 411 51 HOH HOH . J 5 HOH A 12 412 78 HOH HOH . J 5 HOH A 13 413 243 HOH HOH . J 5 HOH A 14 414 147 HOH HOH . J 5 HOH A 15 415 287 HOH HOH . J 5 HOH A 16 416 300 HOH HOH . J 5 HOH A 17 417 107 HOH HOH . J 5 HOH A 18 418 272 HOH HOH . J 5 HOH A 19 419 214 HOH HOH . J 5 HOH A 20 420 37 HOH HOH . J 5 HOH A 21 421 240 HOH HOH . J 5 HOH A 22 422 150 HOH HOH . J 5 HOH A 23 423 115 HOH HOH . J 5 HOH A 24 424 322 HOH HOH . J 5 HOH A 25 425 148 HOH HOH . J 5 HOH A 26 426 9 HOH HOH . J 5 HOH A 27 427 136 HOH HOH . J 5 HOH A 28 428 302 HOH HOH . J 5 HOH A 29 429 144 HOH HOH . J 5 HOH A 30 430 172 HOH HOH . J 5 HOH A 31 431 134 HOH HOH . J 5 HOH A 32 432 40 HOH HOH . J 5 HOH A 33 433 75 HOH HOH . J 5 HOH A 34 434 282 HOH HOH . J 5 HOH A 35 435 246 HOH HOH . J 5 HOH A 36 436 28 HOH HOH . J 5 HOH A 37 437 239 HOH HOH . J 5 HOH A 38 438 87 HOH HOH . J 5 HOH A 39 439 33 HOH HOH . J 5 HOH A 40 440 15 HOH HOH . J 5 HOH A 41 441 175 HOH HOH . J 5 HOH A 42 442 68 HOH HOH . J 5 HOH A 43 443 26 HOH HOH . J 5 HOH A 44 444 222 HOH HOH . J 5 HOH A 45 445 90 HOH HOH . J 5 HOH A 46 446 317 HOH HOH . J 5 HOH A 47 447 52 HOH HOH . J 5 HOH A 48 448 146 HOH HOH . J 5 HOH A 49 449 56 HOH HOH . J 5 HOH A 50 450 67 HOH HOH . J 5 HOH A 51 451 199 HOH HOH . J 5 HOH A 52 452 255 HOH HOH . J 5 HOH A 53 453 161 HOH HOH . J 5 HOH A 54 454 283 HOH HOH . J 5 HOH A 55 455 96 HOH HOH . J 5 HOH A 56 456 70 HOH HOH . J 5 HOH A 57 457 223 HOH HOH . J 5 HOH A 58 458 277 HOH HOH . J 5 HOH A 59 459 94 HOH HOH . J 5 HOH A 60 460 285 HOH HOH . J 5 HOH A 61 461 319 HOH HOH . J 5 HOH A 62 462 298 HOH HOH . J 5 HOH A 63 463 130 HOH HOH . J 5 HOH A 64 464 292 HOH HOH . J 5 HOH A 65 465 167 HOH HOH . J 5 HOH A 66 466 276 HOH HOH . J 5 HOH A 67 467 65 HOH HOH . J 5 HOH A 68 468 310 HOH HOH . J 5 HOH A 69 469 309 HOH HOH . J 5 HOH A 70 470 303 HOH HOH . K 5 HOH Q 1 201 36 HOH HOH . K 5 HOH Q 2 202 11 HOH HOH . K 5 HOH Q 3 203 18 HOH HOH . K 5 HOH Q 4 204 316 HOH HOH . K 5 HOH Q 5 205 27 HOH HOH . K 5 HOH Q 6 206 135 HOH HOH . K 5 HOH Q 7 207 73 HOH HOH . K 5 HOH Q 8 208 58 HOH HOH . K 5 HOH Q 9 209 230 HOH HOH . K 5 HOH Q 10 210 41 HOH HOH . K 5 HOH Q 11 211 177 HOH HOH . K 5 HOH Q 12 212 268 HOH HOH . K 5 HOH Q 13 213 168 HOH HOH . K 5 HOH Q 14 214 44 HOH HOH . K 5 HOH Q 15 215 85 HOH HOH . K 5 HOH Q 16 216 88 HOH HOH . K 5 HOH Q 17 217 133 HOH HOH . K 5 HOH Q 18 218 323 HOH HOH . K 5 HOH Q 19 219 215 HOH HOH . K 5 HOH Q 20 220 111 HOH HOH . K 5 HOH Q 21 221 119 HOH HOH . K 5 HOH Q 22 222 98 HOH HOH . K 5 HOH Q 23 223 212 HOH HOH . K 5 HOH Q 24 224 123 HOH HOH . K 5 HOH Q 25 225 45 HOH HOH . L 5 HOH D 1 401 79 HOH HOH . L 5 HOH D 2 402 143 HOH HOH . L 5 HOH D 3 403 10 HOH HOH . L 5 HOH D 4 404 23 HOH HOH . L 5 HOH D 5 405 17 HOH HOH . L 5 HOH D 6 406 193 HOH HOH . L 5 HOH D 7 407 156 HOH HOH . L 5 HOH D 8 408 202 HOH HOH . L 5 HOH D 9 409 145 HOH HOH . L 5 HOH D 10 410 235 HOH HOH . L 5 HOH D 11 411 250 HOH HOH . L 5 HOH D 12 412 89 HOH HOH . L 5 HOH D 13 413 228 HOH HOH . L 5 HOH D 14 414 71 HOH HOH . L 5 HOH D 15 415 50 HOH HOH . L 5 HOH D 16 416 296 HOH HOH . L 5 HOH D 17 417 76 HOH HOH . L 5 HOH D 18 418 198 HOH HOH . L 5 HOH D 19 419 180 HOH HOH . L 5 HOH D 20 420 93 HOH HOH . L 5 HOH D 21 421 163 HOH HOH . L 5 HOH D 22 422 293 HOH HOH . L 5 HOH D 23 423 100 HOH HOH . L 5 HOH D 24 424 307 HOH HOH . L 5 HOH D 25 425 30 HOH HOH . L 5 HOH D 26 426 205 HOH HOH . L 5 HOH D 27 427 209 HOH HOH . L 5 HOH D 28 428 294 HOH HOH . L 5 HOH D 29 429 21 HOH HOH . L 5 HOH D 30 430 232 HOH HOH . L 5 HOH D 31 431 62 HOH HOH . L 5 HOH D 32 432 8 HOH HOH . L 5 HOH D 33 433 14 HOH HOH . L 5 HOH D 34 434 49 HOH HOH . L 5 HOH D 35 435 178 HOH HOH . L 5 HOH D 36 436 105 HOH HOH . L 5 HOH D 37 437 3 HOH HOH . L 5 HOH D 38 438 81 HOH HOH . L 5 HOH D 39 439 142 HOH HOH . L 5 HOH D 40 440 204 HOH HOH . L 5 HOH D 41 441 66 HOH HOH . L 5 HOH D 42 442 217 HOH HOH . L 5 HOH D 43 443 122 HOH HOH . L 5 HOH D 44 444 139 HOH HOH . L 5 HOH D 45 445 211 HOH HOH . L 5 HOH D 46 446 258 HOH HOH . L 5 HOH D 47 447 86 HOH HOH . L 5 HOH D 48 448 264 HOH HOH . L 5 HOH D 49 449 208 HOH HOH . L 5 HOH D 50 450 54 HOH HOH . L 5 HOH D 51 451 35 HOH HOH . L 5 HOH D 52 452 110 HOH HOH . L 5 HOH D 53 453 251 HOH HOH . L 5 HOH D 54 454 263 HOH HOH . L 5 HOH D 55 455 210 HOH HOH . L 5 HOH D 56 456 176 HOH HOH . L 5 HOH D 57 457 174 HOH HOH . L 5 HOH D 58 458 191 HOH HOH . L 5 HOH D 59 459 46 HOH HOH . L 5 HOH D 60 460 280 HOH HOH . L 5 HOH D 61 461 278 HOH HOH . L 5 HOH D 62 462 253 HOH HOH . L 5 HOH D 63 463 173 HOH HOH . L 5 HOH D 64 464 6 HOH HOH . L 5 HOH D 65 465 266 HOH HOH . L 5 HOH D 66 466 297 HOH HOH . L 5 HOH D 67 467 318 HOH HOH . L 5 HOH D 68 468 218 HOH HOH . L 5 HOH D 69 469 151 HOH HOH . L 5 HOH D 70 470 112 HOH HOH . L 5 HOH D 71 471 207 HOH HOH . L 5 HOH D 72 472 102 HOH HOH . L 5 HOH D 73 473 128 HOH HOH . L 5 HOH D 74 474 20 HOH HOH . L 5 HOH D 75 475 257 HOH HOH . L 5 HOH D 76 476 166 HOH HOH . L 5 HOH D 77 477 299 HOH HOH . L 5 HOH D 78 478 281 HOH HOH . L 5 HOH D 79 479 95 HOH HOH . L 5 HOH D 80 480 312 HOH HOH . L 5 HOH D 81 481 271 HOH HOH . L 5 HOH D 82 482 233 HOH HOH . L 5 HOH D 83 483 311 HOH HOH . L 5 HOH D 84 484 114 HOH HOH . M 5 HOH C 1 401 108 HOH HOH . M 5 HOH C 2 402 196 HOH HOH . M 5 HOH C 3 403 126 HOH HOH . M 5 HOH C 4 404 31 HOH HOH . M 5 HOH C 5 405 152 HOH HOH . M 5 HOH C 6 406 120 HOH HOH . M 5 HOH C 7 407 84 HOH HOH . M 5 HOH C 8 408 131 HOH HOH . M 5 HOH C 9 409 34 HOH HOH . M 5 HOH C 10 410 181 HOH HOH . M 5 HOH C 11 411 16 HOH HOH . M 5 HOH C 12 412 237 HOH HOH . M 5 HOH C 13 413 83 HOH HOH . M 5 HOH C 14 414 245 HOH HOH . M 5 HOH C 15 415 256 HOH HOH . M 5 HOH C 16 416 284 HOH HOH . M 5 HOH C 17 417 64 HOH HOH . M 5 HOH C 18 418 116 HOH HOH . M 5 HOH C 19 419 124 HOH HOH . M 5 HOH C 20 420 197 HOH HOH . M 5 HOH C 21 421 39 HOH HOH . M 5 HOH C 22 422 155 HOH HOH . M 5 HOH C 23 423 106 HOH HOH . M 5 HOH C 24 424 289 HOH HOH . M 5 HOH C 25 425 190 HOH HOH . M 5 HOH C 26 426 60 HOH HOH . M 5 HOH C 27 427 55 HOH HOH . M 5 HOH C 28 428 164 HOH HOH . M 5 HOH C 29 429 170 HOH HOH . M 5 HOH C 30 430 227 HOH HOH . M 5 HOH C 31 431 252 HOH HOH . M 5 HOH C 32 432 4 HOH HOH . M 5 HOH C 33 433 13 HOH HOH . M 5 HOH C 34 434 206 HOH HOH . M 5 HOH C 35 435 295 HOH HOH . M 5 HOH C 36 436 109 HOH HOH . M 5 HOH C 37 437 97 HOH HOH . M 5 HOH C 38 438 248 HOH HOH . M 5 HOH C 39 439 12 HOH HOH . M 5 HOH C 40 440 201 HOH HOH . M 5 HOH C 41 441 265 HOH HOH . M 5 HOH C 42 442 321 HOH HOH . M 5 HOH C 43 443 92 HOH HOH . M 5 HOH C 44 444 290 HOH HOH . M 5 HOH C 45 445 306 HOH HOH . M 5 HOH C 46 446 159 HOH HOH . M 5 HOH C 47 447 195 HOH HOH . M 5 HOH C 48 448 57 HOH HOH . M 5 HOH C 49 449 262 HOH HOH . M 5 HOH C 50 450 47 HOH HOH . M 5 HOH C 51 451 200 HOH HOH . M 5 HOH C 52 452 182 HOH HOH . M 5 HOH C 53 453 213 HOH HOH . M 5 HOH C 54 454 189 HOH HOH . M 5 HOH C 55 455 261 HOH HOH . M 5 HOH C 56 456 101 HOH HOH . N 5 HOH B 1 501 48 HOH HOH . N 5 HOH B 2 502 140 HOH HOH . N 5 HOH B 3 503 59 HOH HOH . N 5 HOH B 4 504 43 HOH HOH . N 5 HOH B 5 505 132 HOH HOH . N 5 HOH B 6 506 183 HOH HOH . N 5 HOH B 7 507 269 HOH HOH . N 5 HOH B 8 508 229 HOH HOH . N 5 HOH B 9 509 320 HOH HOH . N 5 HOH B 10 510 225 HOH HOH . N 5 HOH B 11 511 194 HOH HOH . N 5 HOH B 12 512 154 HOH HOH . N 5 HOH B 13 513 242 HOH HOH . N 5 HOH B 14 514 91 HOH HOH . N 5 HOH B 15 515 121 HOH HOH . N 5 HOH B 16 516 234 HOH HOH . N 5 HOH B 17 517 254 HOH HOH . N 5 HOH B 18 518 273 HOH HOH . N 5 HOH B 19 519 286 HOH HOH . N 5 HOH B 20 520 77 HOH HOH . N 5 HOH B 21 521 279 HOH HOH . N 5 HOH B 22 522 187 HOH HOH . N 5 HOH B 23 523 7 HOH HOH . N 5 HOH B 24 524 153 HOH HOH . N 5 HOH B 25 525 104 HOH HOH . N 5 HOH B 26 526 226 HOH HOH . N 5 HOH B 27 527 238 HOH HOH . N 5 HOH B 28 528 160 HOH HOH . N 5 HOH B 29 529 291 HOH HOH . N 5 HOH B 30 530 186 HOH HOH . N 5 HOH B 31 531 125 HOH HOH . N 5 HOH B 32 532 305 HOH HOH . N 5 HOH B 33 533 24 HOH HOH . N 5 HOH B 34 534 179 HOH HOH . N 5 HOH B 35 535 221 HOH HOH . N 5 HOH B 36 536 267 HOH HOH . N 5 HOH B 37 537 231 HOH HOH . N 5 HOH B 38 538 141 HOH HOH . N 5 HOH B 39 539 188 HOH HOH . N 5 HOH B 40 540 259 HOH HOH . N 5 HOH B 41 541 216 HOH HOH . N 5 HOH B 42 542 113 HOH HOH . N 5 HOH B 43 543 260 HOH HOH . N 5 HOH B 44 544 315 HOH HOH . N 5 HOH B 45 545 314 HOH HOH . N 5 HOH B 46 546 117 HOH HOH . N 5 HOH B 47 547 308 HOH HOH . N 5 HOH B 48 548 304 HOH HOH . N 5 HOH B 49 549 275 HOH HOH . N 5 HOH B 50 550 313 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 3 _atom_site.Cartn_x -31.384 _atom_site.Cartn_y 12.812 _atom_site.Cartn_z 40.44 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 89.68 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 101 _atom_site.auth_asym_id Q _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 253 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #