data_8AXH # _model_server_result.job_id mO3q3qWcudHKpLdAlzowKw _model_server_result.datetime_utc '2025-08-31 14:23:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8axh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":101}' # _entry.id 8AXH # _exptl.entry_id 8AXH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-alpha-D-galactopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8AXH _cell.length_a 35.501 _cell.length_b 68.49 _cell.length_c 90.923 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8AXH _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 H CYS 22 1_555 A SG CYS 98 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? disulf ? disulf2 A SG CYS 156 H CYS 1023 1_555 A SG CYS 224 H CYS 1088 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? covale ? covale1 B C ASP 3 A ASP 3 1_555 B N VAH 4 A VAH 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.353 ? covale ? covale2 B C VAH 4 A VAH 4 1_555 B N ARG 5 A ARG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale3 B OG1 VAH 4 A VAH 4 1_555 H C1 A2G . A A2G 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale4 B C PRO 6 A PRO 7 1_555 B N NH2 7 A NH2 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.306 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id A2G _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-alpha-D-galactopyranose _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms N-acetyl-alpha-D-galactosamine;2-acetamido-2-deoxy-alpha-D-galactose;2-acetamido-2-deoxy-D-galactose;2-acetamido-2-deoxy-galactose;N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O5 C5 A2G sing 1 n n C1 O5 A2G sing 2 n n C1 C2 A2G sing 3 n n C1 H1 A2G sing 4 n n O1 C1 A2G sing 5 n n O1 HO1 A2G sing 6 n n C2 C3 A2G sing 7 n n C2 H2 A2G sing 8 n n N2 C2 A2G sing 9 n n N2 HN2 A2G sing 10 n n C3 C4 A2G sing 11 n n C3 O3 A2G sing 12 n n C3 H3 A2G sing 13 n n O3 HO3 A2G sing 14 n n C4 O4 A2G sing 15 n n C4 H4 A2G sing 16 n n O4 HO4 A2G sing 17 n n C5 C4 A2G sing 18 n n C5 C6 A2G sing 19 n n C5 H5 A2G sing 20 n n C6 O6 A2G sing 21 n n C6 H61 A2G sing 22 n n C7 N2 A2G sing 23 n n O7 C7 A2G doub 24 n n C8 C7 A2G sing 25 n n C8 H81 A2G sing 26 n n C8 H82 A2G sing 27 n n C8 H83 A2G sing 28 n n C6 H62 A2G sing 29 n n O6 HO6 A2G sing 30 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version A2G DGalpNAca 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 A2G N-acetyl-a-D-galactopyranosamine 'COMMON NAME' GMML 1 A2G a-D-GalpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 A2G GalNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 8AXH _atom_sites.fract_transf_matrix[1][1] 0.028168 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014601 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010998 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 EDO H 1 1201 3 EDO EDO . D 3 EDO H 1 1202 4 EDO EDO . E 3 EDO H 1 1203 5 EDO EDO . F 3 EDO H 1 1204 6 EDO EDO . G 3 EDO H 1 1205 7 EDO EDO . H 4 A2G A 1 101 1201 A2G DRG . I 3 EDO A 1 102 1 EDO EDO . J 5 HOH H 1 1301 204 HOH HOH . J 5 HOH H 2 1302 61 HOH HOH . J 5 HOH H 3 1303 220 HOH HOH . J 5 HOH H 4 1304 51 HOH HOH . J 5 HOH H 5 1305 227 HOH HOH . J 5 HOH H 6 1306 49 HOH HOH . J 5 HOH H 7 1307 200 HOH HOH . J 5 HOH H 8 1308 162 HOH HOH . J 5 HOH H 9 1309 39 HOH HOH . J 5 HOH H 10 1310 216 HOH HOH . J 5 HOH H 11 1311 180 HOH HOH . J 5 HOH H 12 1312 226 HOH HOH . J 5 HOH H 13 1313 179 HOH HOH . J 5 HOH H 14 1314 59 HOH HOH . J 5 HOH H 15 1315 46 HOH HOH . J 5 HOH H 16 1316 25 HOH HOH . J 5 HOH H 17 1317 80 HOH HOH . J 5 HOH H 18 1318 97 HOH HOH . J 5 HOH H 19 1319 28 HOH HOH . J 5 HOH H 20 1320 211 HOH HOH . J 5 HOH H 21 1321 24 HOH HOH . J 5 HOH H 22 1322 42 HOH HOH . J 5 HOH H 23 1323 132 HOH HOH . J 5 HOH H 24 1324 208 HOH HOH . J 5 HOH H 25 1325 187 HOH HOH . J 5 HOH H 26 1326 22 HOH HOH . J 5 HOH H 27 1327 141 HOH HOH . J 5 HOH H 28 1328 195 HOH HOH . J 5 HOH H 29 1329 120 HOH HOH . J 5 HOH H 30 1330 137 HOH HOH . J 5 HOH H 31 1331 67 HOH HOH . J 5 HOH H 32 1332 196 HOH HOH . J 5 HOH H 33 1333 47 HOH HOH . J 5 HOH H 34 1334 66 HOH HOH . J 5 HOH H 35 1335 53 HOH HOH . J 5 HOH H 36 1336 109 HOH HOH . J 5 HOH H 37 1337 98 HOH HOH . J 5 HOH H 38 1338 68 HOH HOH . J 5 HOH H 39 1339 214 HOH HOH . J 5 HOH H 40 1340 76 HOH HOH . J 5 HOH H 41 1341 87 HOH HOH . J 5 HOH H 42 1342 73 HOH HOH . J 5 HOH H 43 1343 14 HOH HOH . J 5 HOH H 44 1344 223 HOH HOH . J 5 HOH H 45 1345 43 HOH HOH . J 5 HOH H 46 1346 50 HOH HOH . J 5 HOH H 47 1347 52 HOH HOH . J 5 HOH H 48 1348 62 HOH HOH . J 5 HOH H 49 1349 111 HOH HOH . J 5 HOH H 50 1350 44 HOH HOH . J 5 HOH H 51 1351 21 HOH HOH . J 5 HOH H 52 1352 11 HOH HOH . J 5 HOH H 53 1353 244 HOH HOH . J 5 HOH H 54 1354 33 HOH HOH . J 5 HOH H 55 1355 176 HOH HOH . J 5 HOH H 56 1356 247 HOH HOH . J 5 HOH H 57 1357 4 HOH HOH . J 5 HOH H 58 1358 133 HOH HOH . J 5 HOH H 59 1359 75 HOH HOH . J 5 HOH H 60 1360 10 HOH HOH . J 5 HOH H 61 1361 30 HOH HOH . J 5 HOH H 62 1362 84 HOH HOH . J 5 HOH H 63 1363 144 HOH HOH . J 5 HOH H 64 1364 63 HOH HOH . J 5 HOH H 65 1365 105 HOH HOH . J 5 HOH H 66 1366 234 HOH HOH . J 5 HOH H 67 1367 35 HOH HOH . J 5 HOH H 68 1368 20 HOH HOH . J 5 HOH H 69 1369 2 HOH HOH . J 5 HOH H 70 1370 228 HOH HOH . J 5 HOH H 71 1371 224 HOH HOH . J 5 HOH H 72 1372 64 HOH HOH . J 5 HOH H 73 1373 170 HOH HOH . J 5 HOH H 74 1374 102 HOH HOH . J 5 HOH H 75 1375 237 HOH HOH . J 5 HOH H 76 1376 74 HOH HOH . J 5 HOH H 77 1377 27 HOH HOH . J 5 HOH H 78 1378 56 HOH HOH . J 5 HOH H 79 1379 1 HOH HOH . J 5 HOH H 80 1380 246 HOH HOH . J 5 HOH H 81 1381 48 HOH HOH . J 5 HOH H 82 1382 65 HOH HOH . J 5 HOH H 83 1383 60 HOH HOH . J 5 HOH H 84 1384 103 HOH HOH . J 5 HOH H 85 1385 100 HOH HOH . J 5 HOH H 86 1386 178 HOH HOH . J 5 HOH H 87 1387 34 HOH HOH . J 5 HOH H 88 1388 15 HOH HOH . J 5 HOH H 89 1389 17 HOH HOH . J 5 HOH H 90 1390 232 HOH HOH . J 5 HOH H 91 1391 95 HOH HOH . J 5 HOH H 92 1392 40 HOH HOH . J 5 HOH H 93 1393 71 HOH HOH . J 5 HOH H 94 1394 6 HOH HOH . J 5 HOH H 95 1395 36 HOH HOH . J 5 HOH H 96 1396 82 HOH HOH . J 5 HOH H 97 1397 207 HOH HOH . J 5 HOH H 98 1398 114 HOH HOH . J 5 HOH H 99 1399 168 HOH HOH . J 5 HOH H 100 1400 23 HOH HOH . J 5 HOH H 101 1401 119 HOH HOH . J 5 HOH H 102 1402 127 HOH HOH . J 5 HOH H 103 1403 55 HOH HOH . J 5 HOH H 104 1404 122 HOH HOH . J 5 HOH H 105 1405 96 HOH HOH . J 5 HOH H 106 1406 183 HOH HOH . J 5 HOH H 107 1407 160 HOH HOH . J 5 HOH H 108 1408 172 HOH HOH . J 5 HOH H 109 1409 149 HOH HOH . J 5 HOH H 110 1410 31 HOH HOH . J 5 HOH H 111 1411 184 HOH HOH . J 5 HOH H 112 1412 13 HOH HOH . J 5 HOH H 113 1413 101 HOH HOH . J 5 HOH H 114 1414 12 HOH HOH . J 5 HOH H 115 1415 209 HOH HOH . J 5 HOH H 116 1416 205 HOH HOH . J 5 HOH H 117 1417 37 HOH HOH . J 5 HOH H 118 1418 29 HOH HOH . J 5 HOH H 119 1419 19 HOH HOH . J 5 HOH H 120 1420 215 HOH HOH . J 5 HOH H 121 1421 8 HOH HOH . J 5 HOH H 122 1422 124 HOH HOH . J 5 HOH H 123 1423 69 HOH HOH . J 5 HOH H 124 1424 138 HOH HOH . J 5 HOH H 125 1425 155 HOH HOH . J 5 HOH H 126 1426 229 HOH HOH . J 5 HOH H 127 1427 77 HOH HOH . J 5 HOH H 128 1428 210 HOH HOH . J 5 HOH H 129 1429 188 HOH HOH . J 5 HOH H 130 1430 186 HOH HOH . J 5 HOH H 131 1431 147 HOH HOH . J 5 HOH H 132 1432 219 HOH HOH . J 5 HOH H 133 1433 218 HOH HOH . J 5 HOH H 134 1434 115 HOH HOH . J 5 HOH H 135 1435 38 HOH HOH . J 5 HOH H 136 1436 175 HOH HOH . J 5 HOH H 137 1437 32 HOH HOH . J 5 HOH H 138 1438 231 HOH HOH . J 5 HOH H 139 1439 201 HOH HOH . J 5 HOH H 140 1440 221 HOH HOH . J 5 HOH H 141 1441 72 HOH HOH . J 5 HOH H 142 1442 151 HOH HOH . J 5 HOH H 143 1443 191 HOH HOH . J 5 HOH H 144 1444 236 HOH HOH . J 5 HOH H 145 1445 212 HOH HOH . J 5 HOH H 146 1446 230 HOH HOH . J 5 HOH H 147 1447 110 HOH HOH . J 5 HOH H 148 1448 217 HOH HOH . J 5 HOH H 149 1449 88 HOH HOH . J 5 HOH H 150 1450 126 HOH HOH . J 5 HOH H 151 1451 185 HOH HOH . J 5 HOH H 152 1452 206 HOH HOH . J 5 HOH H 153 1453 57 HOH HOH . J 5 HOH H 154 1454 177 HOH HOH . J 5 HOH H 155 1455 245 HOH HOH . J 5 HOH H 156 1456 197 HOH HOH . J 5 HOH H 157 1457 167 HOH HOH . J 5 HOH H 158 1458 173 HOH HOH . J 5 HOH H 159 1459 166 HOH HOH . J 5 HOH H 160 1460 198 HOH HOH . J 5 HOH H 161 1461 85 HOH HOH . J 5 HOH H 162 1462 174 HOH HOH . J 5 HOH H 163 1463 233 HOH HOH . J 5 HOH H 164 1464 90 HOH HOH . J 5 HOH H 165 1465 163 HOH HOH . J 5 HOH H 166 1466 182 HOH HOH . J 5 HOH H 167 1467 156 HOH HOH . J 5 HOH H 168 1468 123 HOH HOH . J 5 HOH H 169 1469 108 HOH HOH . J 5 HOH H 170 1470 222 HOH HOH . J 5 HOH H 171 1471 238 HOH HOH . J 5 HOH H 172 1472 202 HOH HOH . K 5 HOH A 1 201 3 HOH HOH . K 5 HOH A 2 202 54 HOH HOH . K 5 HOH A 3 203 92 HOH HOH . K 5 HOH A 4 204 199 HOH HOH . K 5 HOH A 5 205 16 HOH HOH . K 5 HOH A 6 206 235 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O5 A2G . . . H 4 20.303 13.064 0.519 1 38.15 ? O5 A2G 101 A 1 HETATM 2 C C1 A2G . . . H 4 19.971 13.309 1.917 1 38.53 ? C1 A2G 101 A 1 HETATM 3 C C2 A2G . . . H 4 19.811 14.811 2.214 1 40.1 ? C2 A2G 101 A 1 HETATM 4 N N2 A2G . . . H 4 19.286 14.962 3.604 1 42.36 ? N2 A2G 101 A 1 HETATM 5 C C3 A2G . . . H 4 18.741 15.384 1.253 1 41.1 ? C3 A2G 101 A 1 HETATM 6 O O3 A2G . . . H 4 18.897 16.806 1.27 1 40.51 ? O3 A2G 101 A 1 HETATM 7 C C4 A2G . . . H 4 18.87 14.922 -0.183 1 40.83 ? C4 A2G 101 A 1 HETATM 8 O O4 A2G . . . H 4 20.006 15.595 -0.704 1 45.39 ? O4 A2G 101 A 1 HETATM 9 C C5 A2G . . . H 4 19.108 13.417 -0.281 1 41.08 ? C5 A2G 101 A 1 HETATM 10 C C6 A2G . . . H 4 19.301 12.95 -1.735 1 44.98 ? C6 A2G 101 A 1 HETATM 11 O O6 A2G . . . H 4 20.011 11.674 -1.771 1 44.75 ? O6 A2G 101 A 1 HETATM 12 C C7 A2G . . . H 4 20.044 14.88 4.721 1 42.44 ? C7 A2G 101 A 1 HETATM 13 O O7 A2G . . . H 4 21.248 14.673 4.726 1 48.35 ? O7 A2G 101 A 1 HETATM 14 C C8 A2G . . . H 4 19.31 15.028 6.047 1 41.66 ? C8 A2G 101 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 335 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 14 #