data_8AXV
#
_model_server_result.job_id            KM4sOYUcpFYsTksR1wYHxw 
_model_server_result.datetime_utc      '2025-03-04 14:31:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8axv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"X","auth_seq_id":1002}' 
#
_entry.id    8AXV 
#
_exptl.entry_id    8AXV 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              165.153 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-amino-7-methyl-1,7-dihydro-6H-purin-6-one 
_entity.pdbx_number_of_molecules    12 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8AXV 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8AXV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dodecameric 
_pdbx_struct_assembly.oligomeric_count      12 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 N N N 
? 3 P N N 
? 3 R N N 
? 3 T N N 
? 3 V N N 
? 3 X N N 
? 3 Z N N 
? 3 BA N N 
? 3 DA N N 
? 3 FA N N 
? 3 HA N N 
? 3 JA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A OE2 GLU 250 A GLU 250 1_555 N N8 MY6 . A MY6 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.298 ? 
covale ? covale2 B OE2 GLU 250 B GLU 250 1_555 P N8 MY6 . B MY6 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.297 ? 
covale ? covale3 C OE2 GLU 250 C GLU 250 1_555 R N8 MY6 . C MY6 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.298 ? 
covale ? covale4 D OE2 GLU 250 D GLU 250 1_555 T N8 MY6 . D MY6 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.298 ? 
covale ? covale5 E OE2 GLU 250 E GLU 250 1_555 V N8 MY6 . E MY6 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.297 ? 
covale ? covale6 F OE2 GLU 250 F GLU 250 1_555 X N8 MY6 . F MY6 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.298 ? 
covale ? covale7 G OE2 GLU 250 G GLU 250 1_555 Z N8 MY6 . G MY6 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.298 ? 
covale ? covale8 H OE2 GLU 250 H GLU 250 1_555 BA N8 MY6 . H MY6 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.297 ? 
covale ? covale9 I OE2 GLU 250 I GLU 250 1_555 DA N8 MY6 . I MY6 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.298 ? 
covale ? covale10 J OE2 GLU 250 J GLU 250 1_555 FA N8 MY6 . J MY6 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.298 ? 
covale ? covale11 K OE2 GLU 250 K GLU 250 1_555 HA N8 MY6 . K MY6 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.297 ? 
covale ? covale12 L OE2 GLU 250 L GLU 250 1_555 JA N8 MY6 . L MY6 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.298 ? 
metalc ? metalc1 A NE2 HIS 79 A HIS 79 1_555 M ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? 
metalc ? metalc2 A SG CYS 141 A CYS 141 1_555 M ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? 
metalc ? metalc3 B NE2 HIS 79 B HIS 79 1_555 O ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? 
metalc ? metalc4 B SG CYS 141 B CYS 141 1_555 O ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? 
metalc ? metalc5 C NE2 HIS 79 C HIS 79 1_555 Q ZN ZN . C ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? 
metalc ? metalc6 C SG CYS 141 C CYS 141 1_555 Q ZN ZN . C ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? 
metalc ? metalc7 D NE2 HIS 79 D HIS 79 1_555 S ZN ZN . D ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? 
metalc ? metalc8 D SG CYS 141 D CYS 141 1_555 S ZN ZN . D ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? 
metalc ? metalc9 E NE2 HIS 79 E HIS 79 1_555 U ZN ZN . E ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? 
metalc ? metalc10 E SG CYS 141 E CYS 141 1_555 U ZN ZN . E ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? 
metalc ? metalc11 F NE2 HIS 79 F HIS 79 1_555 W ZN ZN . F ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? 
metalc ? metalc12 F SG CYS 141 F CYS 141 1_555 W ZN ZN . F ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? 
metalc ? metalc13 G NE2 HIS 79 G HIS 79 1_555 Y ZN ZN . G ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? 
metalc ? metalc14 G SG CYS 141 G CYS 141 1_555 Y ZN ZN . G ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? 
metalc ? metalc15 H NE2 HIS 79 H HIS 79 1_555 AA ZN ZN . H ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? 
metalc ? metalc16 H SG CYS 141 H CYS 141 1_555 AA ZN ZN . H ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? 
metalc ? metalc17 I NE2 HIS 79 I HIS 79 1_555 CA ZN ZN . I ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? 
metalc ? metalc18 I SG CYS 141 I CYS 141 1_555 CA ZN ZN . I ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? 
metalc ? metalc19 J NE2 HIS 79 J HIS 79 1_555 EA ZN ZN . J ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? 
metalc ? metalc20 J SG CYS 141 J CYS 141 1_555 EA ZN ZN . J ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? 
metalc ? metalc21 K NE2 HIS 79 K HIS 79 1_555 GA ZN ZN . K ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? 
metalc ? metalc22 K SG CYS 141 K CYS 141 1_555 GA ZN ZN . K ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? 
metalc ? metalc23 L NE2 HIS 79 L HIS 79 1_555 IA ZN ZN . L ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? 
metalc ? metalc24 L SG CYS 141 L CYS 141 1_555 IA ZN ZN . L ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? 
#
_chem_comp.formula           'C6 H7 N5 O' 
_chem_comp.formula_weight    165.153 
_chem_comp.id                MY6 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-amino-7-methyl-1,7-dihydro-6H-purin-6-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     8AXV 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 2 ZN A 1 1001 1001 ZN ZN . 
N 3 MY6 A 1 1002 1002 MY6 MY6 . 
O 2 ZN B 1 1001 1001 ZN ZN . 
P 3 MY6 B 1 1002 1002 MY6 MY6 . 
Q 2 ZN C 1 1001 1001 ZN ZN . 
R 3 MY6 C 1 1002 1002 MY6 MY6 . 
S 2 ZN D 1 1001 1001 ZN ZN . 
T 3 MY6 D 1 1002 1002 MY6 MY6 . 
U 2 ZN E 1 1001 1001 ZN ZN . 
V 3 MY6 E 1 1002 1002 MY6 MY6 . 
W 2 ZN F 1 1001 1001 ZN ZN . 
X 3 MY6 F 1 1002 1002 MY6 MY6 . 
Y 2 ZN G 1 1001 1001 ZN ZN . 
Z 3 MY6 G 1 1002 1002 MY6 MY6 . 
AA 2 ZN H 1 1001 1001 ZN ZN . 
BA 3 MY6 H 1 1002 1002 MY6 MY6 . 
CA 2 ZN I 1 1001 1001 ZN ZN . 
DA 3 MY6 I 1 1002 1002 MY6 MY6 . 
EA 2 ZN J 1 1001 1001 ZN ZN . 
FA 3 MY6 J 1 1002 1002 MY6 MY6 . 
GA 2 ZN K 1 1001 1001 ZN ZN . 
HA 3 MY6 K 1 1002 1002 MY6 MY6 . 
IA 2 ZN L 1 1001 1001 ZN ZN . 
JA 3 MY6 L 1 1002 1002 MY6 MY6 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MY6 . . . X 3 143.942 238.778 199.189 1 22.9 ? C1 MY6 1002 F 1 
HETATM 2 N N2 MY6 . . . X 3 147.342 237.184 200.027 1 28.74 ? N2 MY6 1002 F 1 
HETATM 3 C C3 MY6 . . . X 3 146.389 237.754 199.006 1 29.71 ? C3 MY6 1002 F 1 
HETATM 4 N N4 MY6 . . . X 3 145.145 238.171 199.755 1 29.3 ? N4 MY6 1002 F 1 
HETATM 5 C C5 MY6 . . . X 3 145.376 237.856 201.128 1 29.44 ? C5 MY6 1002 F 1 
HETATM 6 C C6 MY6 . . . X 3 144.475 238.052 202.35 1 29.59 ? C6 MY6 1002 F 1 
HETATM 7 O O7 MY6 . . . X 3 143.397 238.534 202.225 1 26.68 ? O7 MY6 1002 F 1 
HETATM 8 N N8 MY6 . . . X 3 144.94 237.646 203.66 1 29.71 ? N8 MY6 1002 F 1 
HETATM 9 C C9 MY6 . . . X 3 146.274 237.051 203.798 1 26.26 ? C9 MY6 1002 F 1 
HETATM 10 N N10 MY6 . . . X 3 146.745 236.644 205.092 1 21.59 ? N10 MY6 1002 F 1 
HETATM 11 N N11 MY6 . . . X 3 147.143 236.863 202.616 1 27.73 ? N11 MY6 1002 F 1 
HETATM 12 C C12 MY6 . . . X 3 146.679 237.272 201.286 1 29.38 ? C12 MY6 1002 F 1 
#
_model_server_stats.io_time_ms              49 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    55 
_model_server_stats.query_time_ms           290 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           12 
#