data_8AXW # _model_server_result.job_id VLWrrYIzaPELD1zWCKFLuw _model_server_result.datetime_utc '2024-11-14 19:16:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8axw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":604}' # _entry.id 8AXW # _exptl.entry_id 8AXW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8AXW _cell.length_a 49.625 _cell.length_b 49.625 _cell.length_c 144.775 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8AXW _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall 'P 4abw 2nw' _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 E N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 137 n n C1 C2 GOL sing 138 n n C1 H11 GOL sing 139 n n C1 H12 GOL sing 140 n n O1 HO1 GOL sing 141 n n C2 O2 GOL sing 142 n n C2 C3 GOL sing 143 n n C2 H2 GOL sing 144 n n O2 HO2 GOL sing 145 n n C3 O3 GOL sing 146 n n C3 H31 GOL sing 147 n n C3 H32 GOL sing 148 n n O3 HO3 GOL sing 149 n n # _atom_sites.entry_id 8AXW _atom_sites.fract_transf_matrix[1][1] 0.020151 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020151 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006907 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 601 608 GOL GOL . C 3 EOH A 1 602 602 EOH EOH . D 3 EOH A 1 603 604 EOH EOH . E 2 GOL A 1 604 609 GOL GOL . F 3 EOH A 1 605 606 EOH EOH . G 3 EOH A 1 606 607 EOH EOH . H 4 CL A 1 607 610 CL CL . I 5 PGE A 1 608 601 PGE QXQ . J 6 H56 A 1 609 600 H56 EZI . K 7 HOH A 1 701 6 HOH HOH . K 7 HOH A 2 702 31 HOH HOH . K 7 HOH A 3 703 51 HOH HOH . K 7 HOH A 4 704 103 HOH HOH . K 7 HOH A 5 705 146 HOH HOH . K 7 HOH A 6 706 167 HOH HOH . K 7 HOH A 7 707 142 HOH HOH . K 7 HOH A 8 708 21 HOH HOH . K 7 HOH A 9 709 116 HOH HOH . K 7 HOH A 10 710 174 HOH HOH . K 7 HOH A 11 711 66 HOH HOH . K 7 HOH A 12 712 3 HOH HOH . K 7 HOH A 13 713 131 HOH HOH . K 7 HOH A 14 714 172 HOH HOH . K 7 HOH A 15 715 149 HOH HOH . K 7 HOH A 16 716 28 HOH HOH . K 7 HOH A 17 717 75 HOH HOH . K 7 HOH A 18 718 121 HOH HOH . K 7 HOH A 19 719 49 HOH HOH . K 7 HOH A 20 720 27 HOH HOH . K 7 HOH A 21 721 104 HOH HOH . K 7 HOH A 22 722 108 HOH HOH . K 7 HOH A 23 723 159 HOH HOH . K 7 HOH A 24 724 60 HOH HOH . K 7 HOH A 25 725 111 HOH HOH . K 7 HOH A 26 726 77 HOH HOH . K 7 HOH A 27 727 64 HOH HOH . K 7 HOH A 28 728 179 HOH HOH . K 7 HOH A 29 729 132 HOH HOH . K 7 HOH A 30 730 133 HOH HOH . K 7 HOH A 31 731 42 HOH HOH . K 7 HOH A 32 732 25 HOH HOH . K 7 HOH A 33 733 40 HOH HOH . K 7 HOH A 34 734 1 HOH HOH . K 7 HOH A 35 735 13 HOH HOH . K 7 HOH A 36 736 74 HOH HOH . K 7 HOH A 37 737 110 HOH HOH . K 7 HOH A 38 738 112 HOH HOH . K 7 HOH A 39 739 54 HOH HOH . K 7 HOH A 40 740 10 HOH HOH . K 7 HOH A 41 741 32 HOH HOH . K 7 HOH A 42 742 118 HOH HOH . K 7 HOH A 43 743 44 HOH HOH . K 7 HOH A 44 744 61 HOH HOH . K 7 HOH A 45 745 105 HOH HOH . K 7 HOH A 46 746 143 HOH HOH . K 7 HOH A 47 747 102 HOH HOH . K 7 HOH A 48 748 30 HOH HOH . K 7 HOH A 49 749 115 HOH HOH . K 7 HOH A 50 750 33 HOH HOH . K 7 HOH A 51 751 22 HOH HOH . K 7 HOH A 52 752 56 HOH HOH . K 7 HOH A 53 753 7 HOH HOH . K 7 HOH A 54 754 156 HOH HOH . K 7 HOH A 55 755 34 HOH HOH . K 7 HOH A 56 756 24 HOH HOH . K 7 HOH A 57 757 8 HOH HOH . K 7 HOH A 58 758 90 HOH HOH . K 7 HOH A 59 759 67 HOH HOH . K 7 HOH A 60 760 46 HOH HOH . K 7 HOH A 61 761 15 HOH HOH . K 7 HOH A 62 762 37 HOH HOH . K 7 HOH A 63 763 173 HOH HOH . K 7 HOH A 64 764 53 HOH HOH . K 7 HOH A 65 765 36 HOH HOH . K 7 HOH A 66 766 128 HOH HOH . K 7 HOH A 67 767 73 HOH HOH . K 7 HOH A 68 768 17 HOH HOH . K 7 HOH A 69 769 127 HOH HOH . K 7 HOH A 70 770 95 HOH HOH . K 7 HOH A 71 771 113 HOH HOH . K 7 HOH A 72 772 129 HOH HOH . K 7 HOH A 73 773 79 HOH HOH . K 7 HOH A 74 774 178 HOH HOH . K 7 HOH A 75 775 19 HOH HOH . K 7 HOH A 76 776 89 HOH HOH . K 7 HOH A 77 777 9 HOH HOH . K 7 HOH A 78 778 39 HOH HOH . K 7 HOH A 79 779 154 HOH HOH . K 7 HOH A 80 780 20 HOH HOH . K 7 HOH A 81 781 117 HOH HOH . K 7 HOH A 82 782 45 HOH HOH . K 7 HOH A 83 783 165 HOH HOH . K 7 HOH A 84 784 157 HOH HOH . K 7 HOH A 85 785 52 HOH HOH . K 7 HOH A 86 786 87 HOH HOH . K 7 HOH A 87 787 141 HOH HOH . K 7 HOH A 88 788 84 HOH HOH . K 7 HOH A 89 789 2 HOH HOH . K 7 HOH A 90 790 59 HOH HOH . K 7 HOH A 91 791 78 HOH HOH . K 7 HOH A 92 792 81 HOH HOH . K 7 HOH A 93 793 153 HOH HOH . K 7 HOH A 94 794 16 HOH HOH . K 7 HOH A 95 795 48 HOH HOH . K 7 HOH A 96 796 29 HOH HOH . K 7 HOH A 97 797 70 HOH HOH . K 7 HOH A 98 798 150 HOH HOH . K 7 HOH A 99 799 100 HOH HOH . K 7 HOH A 100 800 106 HOH HOH . K 7 HOH A 101 801 85 HOH HOH . K 7 HOH A 102 802 12 HOH HOH . K 7 HOH A 103 803 41 HOH HOH . K 7 HOH A 104 804 135 HOH HOH . K 7 HOH A 105 805 107 HOH HOH . K 7 HOH A 106 806 162 HOH HOH . K 7 HOH A 107 807 144 HOH HOH . K 7 HOH A 108 808 43 HOH HOH . K 7 HOH A 109 809 5 HOH HOH . K 7 HOH A 110 810 96 HOH HOH . K 7 HOH A 111 811 65 HOH HOH . K 7 HOH A 112 812 50 HOH HOH . K 7 HOH A 113 813 170 HOH HOH . K 7 HOH A 114 814 26 HOH HOH . K 7 HOH A 115 815 71 HOH HOH . K 7 HOH A 116 816 72 HOH HOH . K 7 HOH A 117 817 14 HOH HOH . K 7 HOH A 118 818 160 HOH HOH . K 7 HOH A 119 819 88 HOH HOH . K 7 HOH A 120 820 163 HOH HOH . K 7 HOH A 121 821 23 HOH HOH . K 7 HOH A 122 822 155 HOH HOH . K 7 HOH A 123 823 152 HOH HOH . K 7 HOH A 124 824 47 HOH HOH . K 7 HOH A 125 825 130 HOH HOH . K 7 HOH A 126 826 38 HOH HOH . K 7 HOH A 127 827 134 HOH HOH . K 7 HOH A 128 828 18 HOH HOH . K 7 HOH A 129 829 138 HOH HOH . K 7 HOH A 130 830 120 HOH HOH . K 7 HOH A 131 831 126 HOH HOH . K 7 HOH A 132 832 80 HOH HOH . K 7 HOH A 133 833 114 HOH HOH . K 7 HOH A 134 834 124 HOH HOH . K 7 HOH A 135 835 63 HOH HOH . K 7 HOH A 136 836 148 HOH HOH . K 7 HOH A 137 837 151 HOH HOH . K 7 HOH A 138 838 97 HOH HOH . K 7 HOH A 139 839 86 HOH HOH . K 7 HOH A 140 840 58 HOH HOH . K 7 HOH A 141 841 94 HOH HOH . K 7 HOH A 142 842 55 HOH HOH . K 7 HOH A 143 843 147 HOH HOH . K 7 HOH A 144 844 168 HOH HOH . K 7 HOH A 145 845 91 HOH HOH . K 7 HOH A 146 846 83 HOH HOH . K 7 HOH A 147 847 69 HOH HOH . K 7 HOH A 148 848 169 HOH HOH . K 7 HOH A 149 849 68 HOH HOH . K 7 HOH A 150 850 93 HOH HOH . K 7 HOH A 151 851 175 HOH HOH . K 7 HOH A 152 852 164 HOH HOH . K 7 HOH A 153 853 158 HOH HOH . K 7 HOH A 154 854 4 HOH HOH . K 7 HOH A 155 855 76 HOH HOH . K 7 HOH A 156 856 122 HOH HOH . K 7 HOH A 157 857 99 HOH HOH . K 7 HOH A 158 858 119 HOH HOH . K 7 HOH A 159 859 145 HOH HOH . K 7 HOH A 160 860 82 HOH HOH . K 7 HOH A 161 861 161 HOH HOH . K 7 HOH A 162 862 177 HOH HOH . K 7 HOH A 163 863 137 HOH HOH . K 7 HOH A 164 864 57 HOH HOH . K 7 HOH A 165 865 92 HOH HOH . K 7 HOH A 166 866 136 HOH HOH . K 7 HOH A 167 867 123 HOH HOH . K 7 HOH A 168 868 62 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 2 -0.25 14.888 15.32 1 26.95 ? C1 GOL 604 A 1 HETATM 2 O O1 GOL . . . E 2 -0.4 14.822 16.7 1 20 ? O1 GOL 604 A 1 HETATM 3 C C2 GOL . . . E 2 0.387 16.28 14.953 1 28.31 ? C2 GOL 604 A 1 HETATM 4 O O2 GOL . . . E 2 -0.198 17.338 15.609 1 26 ? O2 GOL 604 A 1 HETATM 5 C C3 GOL . . . E 2 1.852 16.191 15.341 1 23.59 ? C3 GOL 604 A 1 HETATM 6 O O3 GOL . . . E 2 2.492 15.364 14.412 1 27.44 ? O3 GOL 604 A 1 HETATM 7 H H11 GOL . . . E 2 -1.095 14.797 14.853 1 32.37 ? H11 GOL 604 A 1 HETATM 8 H H12 GOL . . . E 2 0.32 14.182 14.977 1 32.37 ? H12 GOL 604 A 1 HETATM 9 H HO1 GOL . . . E 2 -0.723 14.057 16.877 1 24.02 ? HO1 GOL 604 A 1 HETATM 10 H H2 GOL . . . E 2 0.262 16.424 14.002 1 33.99 ? H2 GOL 604 A 1 HETATM 11 H HO2 GOL . . . E 2 -0.087 17.227 16.445 1 31.23 ? HO2 GOL 604 A 1 HETATM 12 H H31 GOL . . . E 2 1.911 15.86 16.251 1 28.33 ? H31 GOL 604 A 1 HETATM 13 H H32 GOL . . . E 2 2.219 17.088 15.371 1 28.33 ? H32 GOL 604 A 1 HETATM 14 H HO3 GOL . . . E 2 2.874 14.75 14.859 1 32.95 ? HO3 GOL 604 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #