data_8AY1 # _model_server_result.job_id ZKQ56-gnE1bu-EJUW0Miug _model_server_result.datetime_utc '2024-12-29 00:50:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ay1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1103}' # _entry.id 8AY1 # _exptl.entry_id 8AY1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 11 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8AY1 _cell.length_a 156.848 _cell.length_b 156.848 _cell.length_c 80.451 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8AY1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 R N N ? 3 S N N ? 3 T N N ? 3 U N N ? 3 V N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 116 A CYS 154 1_555 A SG CYS 149 A CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? disulf ? disulf2 A SG CYS 369 A CYS 407 1_555 A SG CYS 376 A CYS 414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? disulf ? disulf3 A SG CYS 380 A CYS 418 1_555 A SG CYS 418 A CYS 1010 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? disulf ? disulf4 A SG CYS 422 A CYS 1014 1_555 A SG CYS 456 A CYS 1048 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? disulf ? disulf5 A SG CYS 426 A CYS 1018 1_555 A SG CYS 461 A CYS 1053 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? disulf ? disulf6 B SG CYS 116 B CYS 154 1_555 B SG CYS 149 B CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? disulf ? disulf7 B SG CYS 369 B CYS 407 1_555 B SG CYS 376 B CYS 414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? disulf ? disulf8 B SG CYS 380 B CYS 418 1_555 B SG CYS 418 B CYS 1010 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf9 B SG CYS 422 B CYS 1014 1_555 B SG CYS 456 B CYS 1048 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf10 B SG CYS 426 B CYS 1018 1_555 B SG CYS 461 B CYS 1053 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? covale ? covale1 A ND2 ASN 167 A ASN 205 1_555 C C1 NAG . A NAG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.414 ? covale ? covale2 B ND2 ASN 167 B ASN 205 1_555 P C1 NAG . B NAG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.4 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 8AY1 _atom_sites.fract_transf_matrix[1][1] 0.006376 _atom_sites.fract_transf_matrix[1][2] 0.003681 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007362 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01243 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAG A 1 1101 1054 NAG NAG . D 3 EDO A 1 1102 8 EDO EDO . E 3 EDO A 1 1103 10 EDO EDO . F 3 EDO A 1 1104 12 EDO EDO . G 3 EDO A 1 1105 14 EDO EDO . H 3 EDO A 1 1106 16 EDO EDO . I 3 EDO A 1 1107 19 EDO EDO . J 4 SO4 A 1 1108 2 SO4 SO4 . K 4 SO4 A 1 1109 11 SO4 SO4 . L 4 SO4 A 1 1110 12 SO4 SO4 . M 4 SO4 A 1 1111 13 SO4 SO4 . N 4 SO4 A 1 1112 17 SO4 SO4 . O 4 SO4 A 1 1113 18 SO4 SO4 . P 2 NAG B 1 1101 1056 NAG NAG . Q 5 GOL B 1 1102 1101 GOL GOL . R 3 EDO B 1 1103 2 EDO EDO . S 3 EDO B 1 1104 4 EDO EDO . T 3 EDO B 1 1105 7 EDO EDO . U 3 EDO B 1 1106 25 EDO EDO . V 3 EDO B 1 1107 26 EDO EDO . W 4 SO4 B 1 1108 8 SO4 SO4 . X 4 SO4 B 1 1109 9 SO4 SO4 . Y 4 SO4 B 1 1110 10 SO4 SO4 . Z 4 SO4 B 1 1111 14 SO4 SO4 . AA 4 SO4 B 1 1112 15 SO4 SO4 . BA 4 SO4 B 1 1113 16 SO4 SO4 . CA 6 HOH A 1 1201 236 HOH HOH . CA 6 HOH A 2 1202 356 HOH HOH . CA 6 HOH A 3 1203 241 HOH HOH . CA 6 HOH A 4 1204 330 HOH HOH . CA 6 HOH A 5 1205 310 HOH HOH . CA 6 HOH A 6 1206 235 HOH HOH . CA 6 HOH A 7 1207 245 HOH HOH . CA 6 HOH A 8 1208 232 HOH HOH . CA 6 HOH A 9 1209 318 HOH HOH . CA 6 HOH A 10 1210 247 HOH HOH . CA 6 HOH A 11 1211 222 HOH HOH . CA 6 HOH A 12 1212 305 HOH HOH . CA 6 HOH A 13 1213 253 HOH HOH . CA 6 HOH A 14 1214 351 HOH HOH . CA 6 HOH A 15 1215 260 HOH HOH . CA 6 HOH A 16 1216 443 HOH HOH . CA 6 HOH A 17 1217 292 HOH HOH . CA 6 HOH A 18 1218 215 HOH HOH . CA 6 HOH A 19 1219 333 HOH HOH . CA 6 HOH A 20 1220 227 HOH HOH . CA 6 HOH A 21 1221 254 HOH HOH . CA 6 HOH A 22 1222 250 HOH HOH . CA 6 HOH A 23 1223 249 HOH HOH . CA 6 HOH A 24 1224 335 HOH HOH . CA 6 HOH A 25 1225 306 HOH HOH . CA 6 HOH A 26 1226 353 HOH HOH . CA 6 HOH A 27 1227 270 HOH HOH . CA 6 HOH A 28 1228 301 HOH HOH . CA 6 HOH A 29 1229 240 HOH HOH . CA 6 HOH A 30 1230 225 HOH HOH . CA 6 HOH A 31 1231 341 HOH HOH . CA 6 HOH A 32 1232 355 HOH HOH . CA 6 HOH A 33 1233 272 HOH HOH . CA 6 HOH A 34 1234 239 HOH HOH . CA 6 HOH A 35 1235 259 HOH HOH . CA 6 HOH A 36 1236 204 HOH HOH . CA 6 HOH A 37 1237 344 HOH HOH . CA 6 HOH A 38 1238 340 HOH HOH . CA 6 HOH A 39 1239 224 HOH HOH . CA 6 HOH A 40 1240 223 HOH HOH . CA 6 HOH A 41 1241 300 HOH HOH . CA 6 HOH A 42 1242 7 HOH HOH . CA 6 HOH A 43 1243 311 HOH HOH . CA 6 HOH A 44 1244 441 HOH HOH . CA 6 HOH A 45 1245 354 HOH HOH . CA 6 HOH A 46 1246 243 HOH HOH . CA 6 HOH A 47 1247 375 HOH HOH . CA 6 HOH A 48 1248 362 HOH HOH . CA 6 HOH A 49 1249 261 HOH HOH . CA 6 HOH A 50 1250 303 HOH HOH . CA 6 HOH A 51 1251 317 HOH HOH . CA 6 HOH A 52 1252 323 HOH HOH . CA 6 HOH A 53 1253 217 HOH HOH . CA 6 HOH A 54 1254 332 HOH HOH . CA 6 HOH A 55 1255 252 HOH HOH . CA 6 HOH A 56 1256 312 HOH HOH . CA 6 HOH A 57 1257 361 HOH HOH . CA 6 HOH A 58 1258 221 HOH HOH . CA 6 HOH A 59 1259 234 HOH HOH . CA 6 HOH A 60 1260 336 HOH HOH . CA 6 HOH A 61 1261 237 HOH HOH . CA 6 HOH A 62 1262 262 HOH HOH . CA 6 HOH A 63 1263 339 HOH HOH . CA 6 HOH A 64 1264 296 HOH HOH . CA 6 HOH A 65 1265 220 HOH HOH . CA 6 HOH A 66 1266 308 HOH HOH . CA 6 HOH A 67 1267 434 HOH HOH . CA 6 HOH A 68 1268 433 HOH HOH . CA 6 HOH A 69 1269 271 HOH HOH . CA 6 HOH A 70 1270 251 HOH HOH . CA 6 HOH A 71 1271 319 HOH HOH . CA 6 HOH A 72 1272 358 HOH HOH . CA 6 HOH A 73 1273 359 HOH HOH . CA 6 HOH A 74 1274 226 HOH HOH . CA 6 HOH A 75 1275 349 HOH HOH . CA 6 HOH A 76 1276 264 HOH HOH . CA 6 HOH A 77 1277 248 HOH HOH . CA 6 HOH A 78 1278 346 HOH HOH . CA 6 HOH A 79 1279 289 HOH HOH . CA 6 HOH A 80 1280 267 HOH HOH . CA 6 HOH A 81 1281 321 HOH HOH . CA 6 HOH A 82 1282 314 HOH HOH . CA 6 HOH A 83 1283 431 HOH HOH . CA 6 HOH A 84 1284 345 HOH HOH . CA 6 HOH A 85 1285 348 HOH HOH . CA 6 HOH A 86 1286 432 HOH HOH . CA 6 HOH A 87 1287 290 HOH HOH . CA 6 HOH A 88 1288 342 HOH HOH . CA 6 HOH A 89 1289 360 HOH HOH . CA 6 HOH A 90 1290 435 HOH HOH . CA 6 HOH A 91 1291 265 HOH HOH . DA 6 HOH B 1 1201 378 HOH HOH . DA 6 HOH B 2 1202 403 HOH HOH . DA 6 HOH B 3 1203 421 HOH HOH . DA 6 HOH B 4 1204 199 HOH HOH . DA 6 HOH B 5 1205 370 HOH HOH . DA 6 HOH B 6 1206 191 HOH HOH . DA 6 HOH B 7 1207 386 HOH HOH . DA 6 HOH B 8 1208 390 HOH HOH . DA 6 HOH B 9 1209 205 HOH HOH . DA 6 HOH B 10 1210 419 HOH HOH . DA 6 HOH B 11 1211 442 HOH HOH . DA 6 HOH B 12 1212 416 HOH HOH . DA 6 HOH B 13 1213 371 HOH HOH . DA 6 HOH B 14 1214 193 HOH HOH . DA 6 HOH B 15 1215 195 HOH HOH . DA 6 HOH B 16 1216 202 HOH HOH . DA 6 HOH B 17 1217 440 HOH HOH . DA 6 HOH B 18 1218 425 HOH HOH . DA 6 HOH B 19 1219 374 HOH HOH . DA 6 HOH B 20 1220 69 HOH HOH . DA 6 HOH B 21 1221 17 HOH HOH . DA 6 HOH B 22 1222 277 HOH HOH . DA 6 HOH B 23 1223 423 HOH HOH . DA 6 HOH B 24 1224 372 HOH HOH . DA 6 HOH B 25 1225 206 HOH HOH . DA 6 HOH B 26 1226 189 HOH HOH . DA 6 HOH B 27 1227 400 HOH HOH . DA 6 HOH B 28 1228 387 HOH HOH . DA 6 HOH B 29 1229 379 HOH HOH . DA 6 HOH B 30 1230 279 HOH HOH . DA 6 HOH B 31 1231 381 HOH HOH . DA 6 HOH B 32 1232 401 HOH HOH . DA 6 HOH B 33 1233 185 HOH HOH . DA 6 HOH B 34 1234 283 HOH HOH . DA 6 HOH B 35 1235 408 HOH HOH . DA 6 HOH B 36 1236 373 HOH HOH . DA 6 HOH B 37 1237 437 HOH HOH . DA 6 HOH B 38 1238 385 HOH HOH . DA 6 HOH B 39 1239 208 HOH HOH . DA 6 HOH B 40 1240 203 HOH HOH . DA 6 HOH B 41 1241 382 HOH HOH . DA 6 HOH B 42 1242 275 HOH HOH . DA 6 HOH B 43 1243 276 HOH HOH . DA 6 HOH B 44 1244 436 HOH HOH . DA 6 HOH B 45 1245 414 HOH HOH . DA 6 HOH B 46 1246 397 HOH HOH . DA 6 HOH B 47 1247 282 HOH HOH . DA 6 HOH B 48 1248 194 HOH HOH . DA 6 HOH B 49 1249 407 HOH HOH . DA 6 HOH B 50 1250 357 HOH HOH . DA 6 HOH B 51 1251 389 HOH HOH . DA 6 HOH B 52 1252 418 HOH HOH . DA 6 HOH B 53 1253 399 HOH HOH . DA 6 HOH B 54 1254 380 HOH HOH . DA 6 HOH B 55 1255 426 HOH HOH . DA 6 HOH B 56 1256 192 HOH HOH . DA 6 HOH B 57 1257 364 HOH HOH . DA 6 HOH B 58 1258 438 HOH HOH . DA 6 HOH B 59 1259 439 HOH HOH . DA 6 HOH B 60 1260 388 HOH HOH . DA 6 HOH B 61 1261 394 HOH HOH . DA 6 HOH B 62 1262 402 HOH HOH . DA 6 HOH B 63 1263 420 HOH HOH . DA 6 HOH B 64 1264 427 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 3 -32.438 68.443 1.808 1 75.07 ? C1 EDO 1103 A 1 HETATM 2 O O1 EDO . . . E 3 -32.134 69.748 1.329 1 75.33 ? O1 EDO 1103 A 1 HETATM 3 C C2 EDO . . . E 3 -31.775 67.333 1.074 1 73.7 ? C2 EDO 1103 A 1 HETATM 4 O O2 EDO . . . E 3 -32.593 66.625 0.138 1 76.51 ? O2 EDO 1103 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #