data_8AY3 # _model_server_result.job_id W_ZT2n5pl9v9veFHr1pJYw _model_server_result.datetime_utc '2024-11-17 08:00:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ay3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":611}' # _entry.id 8AY3 # _exptl.entry_id 8AY3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8AY3 _cell.length_a 42.702 _cell.length_b 62.25 _cell.length_c 187.014 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8AY3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id N _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 O O HOH . A HOH 652 1_555 F MN MN . B MN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.756 ? metalc ? metalc2 B OD1 ASP 65 B ASP 243 1_555 F MN MN . B MN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc3 B OD2 ASP 65 B ASP 243 1_555 G MN MN . B MN 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc4 B O GLY 66 B GLY 244 1_555 F MN MN . B MN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc5 B OD1 ASP 120 B ASP 298 1_555 E MN MN . B MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.713 ? metalc ? metalc6 B OD2 ASP 120 B ASP 298 1_555 E MN MN . B MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.682 ? metalc ? metalc7 B OE2 GLU 124 B GLU 302 1_555 E MN MN . B MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc8 B O GLY 223 B GLY 401 1_555 E MN MN . B MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? metalc ? metalc9 B OD2 ASP 254 B ASP 432 1_555 D MN MN . B MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.79 ? metalc ? metalc10 B OD1 ASP 254 B ASP 432 1_555 G MN MN . B MN 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc11 B OD1 ASP 258 B ASP 436 1_555 D MN MN . B MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.762 ? metalc ? metalc12 B OD2 ASP 258 B ASP 436 1_555 D MN MN . B MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.625 ? metalc ? metalc13 B OD2 ASP 314 B ASP 492 1_555 G MN MN . B MN 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? metalc ? metalc14 D MN MN . B MN 601 1_555 P O HOH . B HOH 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? metalc ? metalc15 D MN MN . B MN 601 1_555 P O HOH . B HOH 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? metalc ? metalc16 D MN MN . B MN 601 1_555 P O HOH . B HOH 784 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc17 E MN MN . B MN 602 1_555 P O HOH . B HOH 717 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.61 ? metalc ? metalc18 E MN MN . B MN 602 1_555 P O HOH . B HOH 736 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? metalc ? metalc19 E MN MN . B MN 602 1_555 P O HOH . B HOH 781 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc20 F MN MN . B MN 603 1_555 P O HOH . B HOH 708 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc21 F MN MN . B MN 603 1_555 P O HOH . B HOH 738 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.537 ? metalc ? metalc22 F MN MN . B MN 603 1_555 P O HOH . B HOH 753 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc23 F MN MN . B MN 603 1_555 P O HOH . B HOH 789 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.589 ? metalc ? metalc24 G MN MN . B MN 604 1_555 P O HOH . B HOH 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? metalc ? metalc25 G MN MN . B MN 604 1_555 P O HOH . B HOH 708 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.562 ? metalc ? metalc26 G MN MN . B MN 604 1_555 P O HOH . B HOH 756 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? metalc ? metalc27 G MN MN . B MN 604 1_555 P O HOH . B HOH 763 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.598 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 8AY3 _atom_sites.fract_transf_matrix[1][1] 0.023418 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016064 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005347 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 OE3 A 1 501 501 OE3 SB9 . D 4 MN B 1 601 1 MN MN . E 4 MN B 1 602 2 MN MN . F 4 MN B 1 603 3 MN MN . G 4 MN B 1 604 4 MN MN . H 5 CL B 1 605 5 CL CL . I 5 CL B 1 606 6 CL CL . J 5 CL B 1 607 7 CL CL . K 5 CL B 1 608 8 CL CL . L 5 CL B 1 609 9 CL CL . M 5 CL B 1 610 10 CL CL . N 6 GOL B 1 611 21 GOL GOL . O 7 HOH A 1 601 8 HOH HOH . O 7 HOH A 2 602 112 HOH HOH . O 7 HOH A 3 603 138 HOH HOH . O 7 HOH A 4 604 140 HOH HOH . O 7 HOH A 5 605 131 HOH HOH . O 7 HOH A 6 606 6 HOH HOH . O 7 HOH A 7 607 71 HOH HOH . O 7 HOH A 8 608 16 HOH HOH . O 7 HOH A 9 609 136 HOH HOH . O 7 HOH A 10 610 9 HOH HOH . O 7 HOH A 11 611 17 HOH HOH . O 7 HOH A 12 612 152 HOH HOH . O 7 HOH A 13 613 4 HOH HOH . O 7 HOH A 14 614 15 HOH HOH . O 7 HOH A 15 615 10 HOH HOH . O 7 HOH A 16 616 113 HOH HOH . O 7 HOH A 17 617 116 HOH HOH . O 7 HOH A 18 618 7 HOH HOH . O 7 HOH A 19 619 13 HOH HOH . O 7 HOH A 20 620 121 HOH HOH . O 7 HOH A 21 621 14 HOH HOH . O 7 HOH A 22 622 130 HOH HOH . O 7 HOH A 23 623 164 HOH HOH . O 7 HOH A 24 624 85 HOH HOH . O 7 HOH A 25 625 141 HOH HOH . O 7 HOH A 26 626 163 HOH HOH . O 7 HOH A 27 627 2 HOH HOH . O 7 HOH A 28 628 12 HOH HOH . O 7 HOH A 29 629 161 HOH HOH . O 7 HOH A 30 630 64 HOH HOH . O 7 HOH A 31 631 67 HOH HOH . O 7 HOH A 32 632 1 HOH HOH . O 7 HOH A 33 633 158 HOH HOH . O 7 HOH A 34 634 148 HOH HOH . O 7 HOH A 35 635 78 HOH HOH . O 7 HOH A 36 636 128 HOH HOH . O 7 HOH A 37 637 11 HOH HOH . O 7 HOH A 38 638 76 HOH HOH . O 7 HOH A 39 639 153 HOH HOH . O 7 HOH A 40 640 127 HOH HOH . O 7 HOH A 41 641 139 HOH HOH . O 7 HOH A 42 642 137 HOH HOH . O 7 HOH A 43 643 115 HOH HOH . O 7 HOH A 44 644 3 HOH HOH . O 7 HOH A 45 645 111 HOH HOH . O 7 HOH A 46 646 159 HOH HOH . O 7 HOH A 47 647 123 HOH HOH . O 7 HOH A 48 648 160 HOH HOH . O 7 HOH A 49 649 154 HOH HOH . O 7 HOH A 50 650 99 HOH HOH . O 7 HOH A 51 651 132 HOH HOH . O 7 HOH A 52 652 58 HOH HOH . O 7 HOH A 53 653 86 HOH HOH . O 7 HOH A 54 654 82 HOH HOH . O 7 HOH A 55 655 87 HOH HOH . O 7 HOH A 56 656 157 HOH HOH . O 7 HOH A 57 657 162 HOH HOH . O 7 HOH A 58 658 105 HOH HOH . P 7 HOH B 1 701 156 HOH HOH . P 7 HOH B 2 702 56 HOH HOH . P 7 HOH B 3 703 49 HOH HOH . P 7 HOH B 4 704 60 HOH HOH . P 7 HOH B 5 705 102 HOH HOH . P 7 HOH B 6 706 150 HOH HOH . P 7 HOH B 7 707 117 HOH HOH . P 7 HOH B 8 708 50 HOH HOH . P 7 HOH B 9 709 77 HOH HOH . P 7 HOH B 10 710 114 HOH HOH . P 7 HOH B 11 711 92 HOH HOH . P 7 HOH B 12 712 5 HOH HOH . P 7 HOH B 13 713 133 HOH HOH . P 7 HOH B 14 714 51 HOH HOH . P 7 HOH B 15 715 61 HOH HOH . P 7 HOH B 16 716 24 HOH HOH . P 7 HOH B 17 717 55 HOH HOH . P 7 HOH B 18 718 18 HOH HOH . P 7 HOH B 19 719 35 HOH HOH . P 7 HOH B 20 720 101 HOH HOH . P 7 HOH B 21 721 89 HOH HOH . P 7 HOH B 22 722 81 HOH HOH . P 7 HOH B 23 723 57 HOH HOH . P 7 HOH B 24 724 129 HOH HOH . P 7 HOH B 25 725 126 HOH HOH . P 7 HOH B 26 726 146 HOH HOH . P 7 HOH B 27 727 28 HOH HOH . P 7 HOH B 28 728 33 HOH HOH . P 7 HOH B 29 729 19 HOH HOH . P 7 HOH B 30 730 26 HOH HOH . P 7 HOH B 31 731 34 HOH HOH . P 7 HOH B 32 732 22 HOH HOH . P 7 HOH B 33 733 37 HOH HOH . P 7 HOH B 34 734 91 HOH HOH . P 7 HOH B 35 735 134 HOH HOH . P 7 HOH B 36 736 59 HOH HOH . P 7 HOH B 37 737 109 HOH HOH . P 7 HOH B 38 738 23 HOH HOH . P 7 HOH B 39 739 63 HOH HOH . P 7 HOH B 40 740 25 HOH HOH . P 7 HOH B 41 741 68 HOH HOH . P 7 HOH B 42 742 100 HOH HOH . P 7 HOH B 43 743 53 HOH HOH . P 7 HOH B 44 744 120 HOH HOH . P 7 HOH B 45 745 31 HOH HOH . P 7 HOH B 46 746 107 HOH HOH . P 7 HOH B 47 747 27 HOH HOH . P 7 HOH B 48 748 124 HOH HOH . P 7 HOH B 49 749 30 HOH HOH . P 7 HOH B 50 750 147 HOH HOH . P 7 HOH B 51 751 52 HOH HOH . P 7 HOH B 52 752 39 HOH HOH . P 7 HOH B 53 753 90 HOH HOH . P 7 HOH B 54 754 119 HOH HOH . P 7 HOH B 55 755 104 HOH HOH . P 7 HOH B 56 756 88 HOH HOH . P 7 HOH B 57 757 44 HOH HOH . P 7 HOH B 58 758 96 HOH HOH . P 7 HOH B 59 759 32 HOH HOH . P 7 HOH B 60 760 98 HOH HOH . P 7 HOH B 61 761 155 HOH HOH . P 7 HOH B 62 762 74 HOH HOH . P 7 HOH B 63 763 20 HOH HOH . P 7 HOH B 64 764 69 HOH HOH . P 7 HOH B 65 765 42 HOH HOH . P 7 HOH B 66 766 110 HOH HOH . P 7 HOH B 67 767 95 HOH HOH . P 7 HOH B 68 768 40 HOH HOH . P 7 HOH B 69 769 83 HOH HOH . P 7 HOH B 70 770 29 HOH HOH . P 7 HOH B 71 771 38 HOH HOH . P 7 HOH B 72 772 75 HOH HOH . P 7 HOH B 73 773 62 HOH HOH . P 7 HOH B 74 774 41 HOH HOH . P 7 HOH B 75 775 151 HOH HOH . P 7 HOH B 76 776 106 HOH HOH . P 7 HOH B 77 777 73 HOH HOH . P 7 HOH B 78 778 21 HOH HOH . P 7 HOH B 79 779 118 HOH HOH . P 7 HOH B 80 780 54 HOH HOH . P 7 HOH B 81 781 125 HOH HOH . P 7 HOH B 82 782 70 HOH HOH . P 7 HOH B 83 783 43 HOH HOH . P 7 HOH B 84 784 122 HOH HOH . P 7 HOH B 85 785 66 HOH HOH . P 7 HOH B 86 786 45 HOH HOH . P 7 HOH B 87 787 80 HOH HOH . P 7 HOH B 88 788 65 HOH HOH . P 7 HOH B 89 789 97 HOH HOH . P 7 HOH B 90 790 79 HOH HOH . P 7 HOH B 91 791 72 HOH HOH . P 7 HOH B 92 792 36 HOH HOH . P 7 HOH B 93 793 93 HOH HOH . P 7 HOH B 94 794 108 HOH HOH . P 7 HOH B 95 795 46 HOH HOH . P 7 HOH B 96 796 142 HOH HOH . P 7 HOH B 97 797 47 HOH HOH . P 7 HOH B 98 798 165 HOH HOH . P 7 HOH B 99 799 84 HOH HOH . P 7 HOH B 100 800 149 HOH HOH . P 7 HOH B 101 801 48 HOH HOH . P 7 HOH B 102 802 103 HOH HOH . P 7 HOH B 103 803 144 HOH HOH . P 7 HOH B 104 804 143 HOH HOH . P 7 HOH B 105 805 94 HOH HOH . P 7 HOH B 106 806 145 HOH HOH . P 7 HOH B 107 807 135 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . N 6 11.906 16.925 9.122 1 60.22 ? C1 GOL 611 B 1 HETATM 2 O O1 GOL . . . N 6 11.348 18.156 8.781 1 44.49 ? O1 GOL 611 B 1 HETATM 3 C C2 GOL . . . N 6 13.253 16.758 8.382 1 63.56 ? C2 GOL 611 B 1 HETATM 4 O O2 GOL . . . N 6 14.26 17.302 9.066 1 64.39 ? O2 GOL 611 B 1 HETATM 5 C C3 GOL . . . N 6 13.345 15.208 8.184 1 67.66 ? C3 GOL 611 B 1 HETATM 6 O O3 GOL . . . N 6 12.501 14.958 7.087 1 63.6 ? O3 GOL 611 B 1 HETATM 7 H H11 GOL . . . N 6 11.327 16.183 8.885 1 72.15 ? H11 GOL 611 B 1 HETATM 8 H H12 GOL . . . N 6 12.063 16.846 10.075 1 72.15 ? H12 GOL 611 B 1 HETATM 9 H HO1 GOL . . . N 6 10.623 17.983 8.363 1 53.27 ? HO1 GOL 611 B 1 HETATM 10 H H2 GOL . . . N 6 13.284 17.212 7.526 1 76.15 ? H2 GOL 611 B 1 HETATM 11 H HO2 GOL . . . N 6 14.671 17.809 8.523 1 77.16 ? HO2 GOL 611 B 1 HETATM 12 H H31 GOL . . . N 6 13.076 14.756 9 1 81.07 ? H31 GOL 611 B 1 HETATM 13 H H32 GOL . . . N 6 14.268 14.948 8.04 1 81.07 ? H32 GOL 611 B 1 HETATM 14 H HO3 GOL . . . N 6 11.924 14.369 7.337 1 76.2 ? HO3 GOL 611 B 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 36 _model_server_stats.create_model_time_ms 34 _model_server_stats.query_time_ms 610 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 14 #