data_8AY7
#
_model_server_result.job_id            c7XBRHblzI26T-952Lz04A 
_model_server_result.datetime_utc      '2024-11-17 06:46:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8ay7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"O","auth_seq_id":611}' 
#
_entry.id    8AY7 
#
_exptl.entry_id    8AY7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8AY7 
_cell.length_a            42.821 
_cell.length_b            62.724 
_cell.length_c            186.948 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8AY7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    'P 2ac 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 N N N 
? 4 O N N 
? 4 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B OD1 ASP 65 B ASP 243 1_555 G MN MN . B MN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? 
metalc ? metalc2 B OD2 ASP 65 B ASP 243 1_555 H MN MN . B MN 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? 
metalc ? metalc3 B O GLY 66 B GLY 244 1_555 G MN MN . B MN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? 
metalc ? metalc4 B OD1 ASP 120 B ASP 298 1_555 F MN MN . B MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.638 ? 
metalc ? metalc5 B OD2 ASP 120 B ASP 298 1_555 F MN MN . B MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.513 ? 
metalc ? metalc6 B OE2 GLU 124 B GLU 302 1_555 F MN MN . B MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.976 ? 
metalc ? metalc7 B O GLY 223 B GLY 401 1_555 F MN MN . B MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? 
metalc ? metalc8 B OD1 ASP 254 B ASP 432 1_555 H MN MN . B MN 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? 
metalc ? metalc9 B OD2 ASP 314 B ASP 492 1_555 H MN MN . B MN 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.466 ? 
metalc ? metalc10 E MN MN . B MN 601 1_555 R O HOH . B HOH 744 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.498 ? 
metalc ? metalc11 E MN MN . B MN 601 1_555 R O HOH . B HOH 747 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.726 ? 
metalc ? metalc12 E MN MN . B MN 601 1_555 R O HOH . B HOH 749 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.507 ? 
metalc ? metalc13 F MN MN . B MN 602 1_555 R O HOH . B HOH 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.699 ? 
metalc ? metalc14 F MN MN . B MN 602 1_555 R O HOH . B HOH 741 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.635 ? 
metalc ? metalc15 G MN MN . B MN 603 1_555 R O HOH . B HOH 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.552 ? 
metalc ? metalc16 G MN MN . B MN 603 1_555 R O HOH . B HOH 716 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? 
metalc ? metalc17 G MN MN . B MN 603 1_555 R O HOH . B HOH 718 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? 
metalc ? metalc18 G MN MN . B MN 603 1_555 R O HOH . B HOH 736 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? 
metalc ? metalc19 H MN MN . B MN 604 1_555 R O HOH . B HOH 715 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? 
metalc ? metalc20 H MN MN . B MN 604 1_555 R O HOH . B HOH 729 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.509 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     8AY7 
_atom_sites.fract_transf_matrix[1][1]    0.023353 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015943 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005349 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 S5N A 1 501 501 S5N SB7 . 
D 4 GOL A 1 502 21 GOL GOL . 
E 5 MN B 1 601 1 MN MN . 
F 5 MN B 1 602 2 MN MN . 
G 5 MN B 1 603 3 MN MN . 
H 5 MN B 1 604 4 MN MN . 
I 6 CL B 1 605 5 CL CL . 
J 6 CL B 1 606 6 CL CL . 
K 6 CL B 1 607 7 CL CL . 
L 6 CL B 1 608 8 CL CL . 
M 6 CL B 1 609 9 CL CL . 
N 4 GOL B 1 610 22 GOL GOL . 
O 4 GOL B 1 611 23 GOL GOL . 
P 4 GOL B 1 612 24 GOL GOL . 
Q 7 HOH A 1 601 27 HOH HOH . 
Q 7 HOH A 2 602 63 HOH HOH . 
Q 7 HOH A 3 603 2 HOH HOH . 
Q 7 HOH A 4 604 62 HOH HOH . 
Q 7 HOH A 5 605 4 HOH HOH . 
Q 7 HOH A 6 606 37 HOH HOH . 
Q 7 HOH A 7 607 35 HOH HOH . 
Q 7 HOH A 8 608 49 HOH HOH . 
Q 7 HOH A 9 609 77 HOH HOH . 
Q 7 HOH A 10 610 1 HOH HOH . 
Q 7 HOH A 11 611 61 HOH HOH . 
Q 7 HOH A 12 612 59 HOH HOH . 
Q 7 HOH A 13 613 56 HOH HOH . 
Q 7 HOH A 14 614 25 HOH HOH . 
Q 7 HOH A 15 615 43 HOH HOH . 
Q 7 HOH A 16 616 5 HOH HOH . 
Q 7 HOH A 17 617 3 HOH HOH . 
Q 7 HOH A 18 618 31 HOH HOH . 
Q 7 HOH A 19 619 48 HOH HOH . 
Q 7 HOH A 20 620 60 HOH HOH . 
Q 7 HOH A 21 621 39 HOH HOH . 
Q 7 HOH A 22 622 41 HOH HOH . 
Q 7 HOH A 23 623 42 HOH HOH . 
Q 7 HOH A 24 624 65 HOH HOH . 
Q 7 HOH A 25 625 68 HOH HOH . 
Q 7 HOH A 26 626 72 HOH HOH . 
R 7 HOH B 1 701 75 HOH HOH . 
R 7 HOH B 2 702 6 HOH HOH . 
R 7 HOH B 3 703 51 HOH HOH . 
R 7 HOH B 4 704 24 HOH HOH . 
R 7 HOH B 5 705 66 HOH HOH . 
R 7 HOH B 6 706 13 HOH HOH . 
R 7 HOH B 7 707 50 HOH HOH . 
R 7 HOH B 8 708 44 HOH HOH . 
R 7 HOH B 9 709 47 HOH HOH . 
R 7 HOH B 10 710 34 HOH HOH . 
R 7 HOH B 11 711 10 HOH HOH . 
R 7 HOH B 12 712 36 HOH HOH . 
R 7 HOH B 13 713 14 HOH HOH . 
R 7 HOH B 14 714 22 HOH HOH . 
R 7 HOH B 15 715 7 HOH HOH . 
R 7 HOH B 16 716 54 HOH HOH . 
R 7 HOH B 17 717 11 HOH HOH . 
R 7 HOH B 18 718 8 HOH HOH . 
R 7 HOH B 19 719 33 HOH HOH . 
R 7 HOH B 20 720 71 HOH HOH . 
R 7 HOH B 21 721 55 HOH HOH . 
R 7 HOH B 22 722 9 HOH HOH . 
R 7 HOH B 23 723 19 HOH HOH . 
R 7 HOH B 24 724 28 HOH HOH . 
R 7 HOH B 25 725 40 HOH HOH . 
R 7 HOH B 26 726 32 HOH HOH . 
R 7 HOH B 27 727 57 HOH HOH . 
R 7 HOH B 28 728 76 HOH HOH . 
R 7 HOH B 29 729 12 HOH HOH . 
R 7 HOH B 30 730 53 HOH HOH . 
R 7 HOH B 31 731 38 HOH HOH . 
R 7 HOH B 32 732 16 HOH HOH . 
R 7 HOH B 33 733 45 HOH HOH . 
R 7 HOH B 34 734 46 HOH HOH . 
R 7 HOH B 35 735 15 HOH HOH . 
R 7 HOH B 36 736 18 HOH HOH . 
R 7 HOH B 37 737 26 HOH HOH . 
R 7 HOH B 38 738 73 HOH HOH . 
R 7 HOH B 39 739 17 HOH HOH . 
R 7 HOH B 40 740 23 HOH HOH . 
R 7 HOH B 41 741 78 HOH HOH . 
R 7 HOH B 42 742 67 HOH HOH . 
R 7 HOH B 43 743 58 HOH HOH . 
R 7 HOH B 44 744 29 HOH HOH . 
R 7 HOH B 45 745 20 HOH HOH . 
R 7 HOH B 46 746 64 HOH HOH . 
R 7 HOH B 47 747 70 HOH HOH . 
R 7 HOH B 48 748 30 HOH HOH . 
R 7 HOH B 49 749 69 HOH HOH . 
R 7 HOH B 50 750 21 HOH HOH . 
R 7 HOH B 51 751 52 HOH HOH . 
R 7 HOH B 52 752 74 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . O 4 13.023 15.129 6.971 1 81.55 ? C1 GOL 611 B 1 
HETATM 2 O O1 GOL . . . O 4 11.868 15.326 6.256 1 81.25 ? O1 GOL 611 B 1 
HETATM 3 C C2 GOL . . . O 4 12.678 15.24 8.48 1 81.22 ? C2 GOL 611 B 1 
HETATM 4 O O2 GOL . . . O 4 13.295 14.236 9.184 1 80.64 ? O2 GOL 611 B 1 
HETATM 5 C C3 GOL . . . O 4 13.152 16.673 8.835 1 83.08 ? C3 GOL 611 B 1 
HETATM 6 O O3 GOL . . . O 4 11.989 17.495 8.937 1 85.67 ? O3 GOL 611 B 1 
HETATM 7 H H11 GOL . . . O 4 13.42 14.26 6.8 1 97.88 ? H11 GOL 611 B 1 
HETATM 8 H H12 GOL . . . O 4 13.708 15.781 6.754 1 97.88 ? H12 GOL 611 B 1 
HETATM 9 H HO1 GOL . . . O 4 12.026 15.047 5.478 1 97.52 ? HO1 GOL 611 B 1 
HETATM 10 H H2 GOL . . . O 4 11.734 15.141 8.681 1 97.49 ? H2 GOL 611 B 1 
HETATM 11 H HO2 GOL . . . O 4 13.571 13.678 8.618 1 96.79 ? HO2 GOL 611 B 1 
HETATM 12 H H31 GOL . . . O 4 13.774 16.972 8.154 1 99.72 ? H31 GOL 611 B 1 
HETATM 13 H H32 GOL . . . O 4 13.668 16.635 9.656 1 99.72 ? H32 GOL 611 B 1 
HETATM 14 H HO3 GOL . . . O 4 11.761 17.483 9.745 1 102.83 ? HO3 GOL 611 B 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           304 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           14 
#