data_8AY9 # _model_server_result.job_id LvEqIa2UCDJA1-qUSPYI9g _model_server_result.datetime_utc '2024-11-17 07:30:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ay9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 8AY9 # _exptl.entry_id 8AY9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 264.317 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2Z,4E)-5-[(1S)-1-hydroxy-2,6,6-trimethyl-4-oxocyclohex-2-en-1-yl]-3-methylpenta-2,4-dienoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8AY9 _cell.length_a 42.763 _cell.length_b 62.923 _cell.length_c 187.01 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8AY9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B OD1 ASP 65 B ASP 243 1_555 F MN MN . B MN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc2 B OD2 ASP 65 B ASP 243 1_555 G MN MN . B MN 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc3 B O GLY 66 B GLY 244 1_555 F MN MN . B MN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc4 B OD1 ASP 120 B ASP 298 1_555 E MN MN . B MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.779 ? metalc ? metalc5 B OD2 ASP 120 B ASP 298 1_555 E MN MN . B MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.577 ? metalc ? metalc6 B OE2 GLU 124 B GLU 302 1_555 E MN MN . B MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.546 ? metalc ? metalc7 B O GLY 223 B GLY 401 1_555 E MN MN . B MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc8 B OD2 ASP 254 B ASP 432 1_555 D MN MN . B MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc9 B OD1 ASP 254 B ASP 432 1_555 G MN MN . B MN 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? metalc ? metalc10 B OD2 ASP 258 B ASP 436 1_555 D MN MN . B MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.647 ? metalc ? metalc11 B OD2 ASP 314 B ASP 492 1_555 G MN MN . B MN 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc12 D MN MN . B MN 601 1_555 P O HOH . B HOH 709 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc13 D MN MN . B MN 601 1_555 P O HOH . B HOH 715 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc14 D MN MN . B MN 601 1_555 P O HOH . B HOH 732 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? metalc ? metalc15 E MN MN . B MN 602 1_555 P O HOH . B HOH 711 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.798 ? metalc ? metalc16 F MN MN . B MN 603 1_555 P O HOH . B HOH 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc17 F MN MN . B MN 603 1_555 P O HOH . B HOH 713 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.738 ? metalc ? metalc18 F MN MN . B MN 603 1_555 P O HOH . B HOH 720 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? metalc ? metalc19 G MN MN . B MN 604 1_555 P O HOH . B HOH 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? metalc ? metalc20 G MN MN . B MN 604 1_555 P O HOH . B HOH 714 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? metalc ? metalc21 G MN MN . B MN 604 1_555 P O HOH . B HOH 727 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.555 ? # _chem_comp.formula 'C15 H20 O4' _chem_comp.formula_weight 264.317 _chem_comp.id A8S _chem_comp.mon_nstd_flag . _chem_comp.name '(2Z,4E)-5-[(1S)-1-hydroxy-2,6,6-trimethyl-4-oxocyclohex-2-en-1-yl]-3-methylpenta-2,4-dienoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '(+)-abscisic acid;(2Z,4E)-5-[(1S)-1-hydroxy-2,6,6-trimethyl-4-oxo-2-cyclohexen-1-yl]-3-methyl-2,4-pentadienoic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O11 C1 A8S sing 1 n n O12 C1 A8S doub 2 z n C1 C2 A8S sing 3 n n C2 C3 A8S doub 4 n n C2 H2 A8S sing 5 n n C3 C4 A8S sing 6 e n C3 C6 A8S sing 7 n n C4 C5 A8S doub 8 n n C4 H4 A8S sing 9 n n C5 C7 A8S sing 10 n n C5 H5 A8S sing 11 n n C6 H6 A8S sing 12 n n C6 H6A A8S sing 13 n n C6 H6B A8S sing 14 n n O7 C7 A8S sing 15 n n C7 C12 A8S sing 16 n n C7 C8 A8S sing 17 n n O7 HO7 A8S sing 18 n n C8 C13 A8S sing 19 n n C8 C9 A8S doub 20 n n C9 C10 A8S sing 21 n n C9 H9 A8S sing 22 n n C11 C10 A8S sing 23 n n C10 O10 A8S doub 24 n n C12 C11 A8S sing 25 n n C11 H11 A8S sing 26 n n C11 H11A A8S sing 27 n n C15 C12 A8S sing 28 n n C14 C12 A8S sing 29 n n O11 HO11 A8S sing 30 n n C13 H13 A8S sing 31 n n C13 H13A A8S sing 32 n n C14 H14 A8S sing 33 n n C14 H14A A8S sing 34 n n C14 H14B A8S sing 35 n n C15 H15 A8S sing 36 n n C15 H15A A8S sing 37 n n C15 H15B A8S sing 38 n n C13 H13B A8S sing 39 n n # _atom_sites.entry_id 8AY9 _atom_sites.fract_transf_matrix[1][1] 0.023385 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015892 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005347 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 A8S A 1 301 301 A8S A8S . D 4 MN B 1 601 1 MN MN . E 4 MN B 1 602 2 MN MN . F 4 MN B 1 603 3 MN MN . G 4 MN B 1 604 4 MN MN . H 5 CL B 1 605 5 CL CL . I 5 CL B 1 606 6 CL CL . J 5 CL B 1 607 7 CL CL . K 5 CL B 1 608 8 CL CL . L 5 CL B 1 609 9 CL CL . M 5 CL B 1 610 10 CL CL . N 6 GOL B 1 611 21 GOL GOL . O 7 HOH A 1 401 23 HOH HOH . O 7 HOH A 2 402 41 HOH HOH . O 7 HOH A 3 403 8 HOH HOH . O 7 HOH A 4 404 32 HOH HOH . O 7 HOH A 5 405 46 HOH HOH . O 7 HOH A 6 406 10 HOH HOH . O 7 HOH A 7 407 45 HOH HOH . O 7 HOH A 8 408 42 HOH HOH . O 7 HOH A 9 409 2 HOH HOH . O 7 HOH A 10 410 1 HOH HOH . O 7 HOH A 11 411 17 HOH HOH . O 7 HOH A 12 412 4 HOH HOH . P 7 HOH B 1 701 22 HOH HOH . P 7 HOH B 2 702 27 HOH HOH . P 7 HOH B 3 703 33 HOH HOH . P 7 HOH B 4 704 40 HOH HOH . P 7 HOH B 5 705 9 HOH HOH . P 7 HOH B 6 706 14 HOH HOH . P 7 HOH B 7 707 38 HOH HOH . P 7 HOH B 8 708 43 HOH HOH . P 7 HOH B 9 709 16 HOH HOH . P 7 HOH B 10 710 5 HOH HOH . P 7 HOH B 11 711 20 HOH HOH . P 7 HOH B 12 712 13 HOH HOH . P 7 HOH B 13 713 34 HOH HOH . P 7 HOH B 14 714 7 HOH HOH . P 7 HOH B 15 715 15 HOH HOH . P 7 HOH B 16 716 44 HOH HOH . P 7 HOH B 17 717 6 HOH HOH . P 7 HOH B 18 718 28 HOH HOH . P 7 HOH B 19 719 30 HOH HOH . P 7 HOH B 20 720 12 HOH HOH . P 7 HOH B 21 721 11 HOH HOH . P 7 HOH B 22 722 31 HOH HOH . P 7 HOH B 23 723 25 HOH HOH . P 7 HOH B 24 724 19 HOH HOH . P 7 HOH B 25 725 18 HOH HOH . P 7 HOH B 26 726 29 HOH HOH . P 7 HOH B 27 727 24 HOH HOH . P 7 HOH B 28 728 39 HOH HOH . P 7 HOH B 29 729 3 HOH HOH . P 7 HOH B 30 730 37 HOH HOH . P 7 HOH B 31 731 36 HOH HOH . P 7 HOH B 32 732 35 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 A8S . . . C 3 0.472 5.863 36.985 1 85.25 ? C1 A8S 301 A 1 HETATM 2 C C2 A8S . . . C 3 1.833 6.452 36.584 1 75.37 ? C2 A8S 301 A 1 HETATM 3 C C3 A8S . . . C 3 2.46 6.671 35.4 1 68.91 ? C3 A8S 301 A 1 HETATM 4 C C4 A8S . . . C 3 1.864 6.304 34.114 1 70.78 ? C4 A8S 301 A 1 HETATM 5 C C5 A8S . . . C 3 2.509 6.509 32.967 1 61.94 ? C5 A8S 301 A 1 HETATM 6 C C6 A8S . . . C 3 3.829 7.295 35.378 1 58.63 ? C6 A8S 301 A 1 HETATM 7 C C7 A8S . . . C 3 1.976 6.175 31.587 1 63.16 ? C7 A8S 301 A 1 HETATM 8 O O7 A8S . . . C 3 0.594 5.869 31.597 1 58.57 ? O7 A8S 301 A 1 HETATM 9 C C8 A8S . . . C 3 2.166 7.434 30.771 1 61.69 ? C8 A8S 301 A 1 HETATM 10 C C9 A8S . . . C 3 3.222 7.622 29.977 1 65.79 ? C9 A8S 301 A 1 HETATM 11 C C10 A8S . . . C 3 4.298 6.659 29.833 1 69.84 ? C10 A8S 301 A 1 HETATM 12 O O10 A8S . . . C 3 5.21 6.826 29.03 1 84.67 ? O10 A8S 301 A 1 HETATM 13 C C11 A8S . . . C 3 4.207 5.423 30.682 1 56.56 ? C11 A8S 301 A 1 HETATM 14 O O11 A8S . . . C 3 0.277 5.682 38.233 1 87.39 ? O11 A8S 301 A 1 HETATM 15 C C12 A8S . . . C 3 2.758 4.975 30.919 1 59.68 ? C12 A8S 301 A 1 HETATM 16 O O12 A8S . . . C 3 -0.36 5.548 36.101 1 92.67 ? O12 A8S 301 A 1 HETATM 17 C C13 A8S . . . C 3 1.111 8.492 30.909 1 53.72 ? C13 A8S 301 A 1 HETATM 18 C C14 A8S . . . C 3 2.134 4.618 29.565 1 67.61 ? C14 A8S 301 A 1 HETATM 19 C C15 A8S . . . C 3 2.762 3.695 31.758 1 57.68 ? C15 A8S 301 A 1 HETATM 20 H H2 A8S . . . C 3 2.382 6.745 37.478 1 90.71 ? H2 A8S 301 A 1 HETATM 21 H H4 A8S . . . C 3 0.872 5.86 34.185 1 85.2 ? H4 A8S 301 A 1 HETATM 22 H H5 A8S . . . C 3 3.504 6.947 32.914 1 74.59 ? H5 A8S 301 A 1 HETATM 23 H H6 A8S . . . C 3 4.55 6.652 34.875 1 70.62 ? H6 A8S 301 A 1 HETATM 24 H H6A A8S . . . C 3 4.199 7.476 36.386 1 70.62 ? H6A A8S 301 A 1 HETATM 25 H H6B A8S . . . C 3 3.822 8.25 34.856 1 70.62 ? H6B A8S 301 A 1 HETATM 26 H HO7 A8S . . . C 3 0.223 6.115 30.709 1 70.55 ? HO7 A8S 301 A 1 HETATM 27 H H9 A8S . . . C 3 3.329 8.53 29.385 1 79.21 ? H9 A8S 301 A 1 HETATM 28 H H11 A8S . . . C 3 4.799 4.638 30.215 1 68.14 ? H11 A8S 301 A 1 HETATM 29 H H11A A8S . . . C 3 4.729 5.608 31.62 1 68.14 ? H11A A8S 301 A 1 HETATM 30 H H13 A8S . . . C 3 0.879 8.672 31.958 1 64.74 ? H13 A8S 301 A 1 HETATM 31 H H13A A8S . . . C 3 0.193 8.191 30.407 1 64.74 ? H13A A8S 301 A 1 HETATM 32 H H14 A8S . . . C 3 1.496 5.413 29.182 1 81.4 ? H14 A8S 301 A 1 HETATM 33 H H14A A8S . . . C 3 1.515 3.724 29.619 1 81.4 ? H14A A8S 301 A 1 HETATM 34 H H14B A8S . . . C 3 2.886 4.429 28.801 1 81.4 ? H14B A8S 301 A 1 HETATM 35 H H15 A8S . . . C 3 1.795 3.499 32.219 1 69.48 ? H15 A8S 301 A 1 HETATM 36 H H15A A8S . . . C 3 3.488 3.734 32.568 1 69.48 ? H15A A8S 301 A 1 HETATM 37 H H15B A8S . . . C 3 3.006 2.814 31.166 1 69.48 ? H15B A8S 301 A 1 HETATM 38 H H13B A8S . . . C 3 1.445 9.431 30.47 1 64.74 ? H13B A8S 301 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 38 #