data_8AY9
#
_model_server_result.job_id            48A26ZCwExTCd2x-pmRYmg 
_model_server_result.datetime_utc      '2024-11-17 07:37:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8ay9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":601}' 
#
_entry.id    8AY9 
#
_exptl.entry_id    8AY9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              54.938 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MANGANESE (II) ION' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8AY9 
_cell.length_a            42.763 
_cell.length_b            62.923 
_cell.length_c            187.01 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8AY9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    'P 2ac 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
? 4 F N N 
? 4 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B OD1 ASP 65 B ASP 243 1_555 F MN MN . B MN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? 
metalc ? metalc2 B OD2 ASP 65 B ASP 243 1_555 G MN MN . B MN 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? 
metalc ? metalc3 B O GLY 66 B GLY 244 1_555 F MN MN . B MN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? 
metalc ? metalc4 B OD1 ASP 120 B ASP 298 1_555 E MN MN . B MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.779 ? 
metalc ? metalc5 B OD2 ASP 120 B ASP 298 1_555 E MN MN . B MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.577 ? 
metalc ? metalc6 B OE2 GLU 124 B GLU 302 1_555 E MN MN . B MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.546 ? 
metalc ? metalc7 B O GLY 223 B GLY 401 1_555 E MN MN . B MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? 
metalc ? metalc8 B OD2 ASP 254 B ASP 432 1_555 D MN MN . B MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? 
metalc ? metalc9 B OD1 ASP 254 B ASP 432 1_555 G MN MN . B MN 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? 
metalc ? metalc10 B OD2 ASP 258 B ASP 436 1_555 D MN MN . B MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.647 ? 
metalc ? metalc11 B OD2 ASP 314 B ASP 492 1_555 G MN MN . B MN 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? 
metalc ? metalc12 D MN MN . B MN 601 1_555 P O HOH . B HOH 709 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? 
metalc ? metalc13 D MN MN . B MN 601 1_555 P O HOH . B HOH 715 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? 
metalc ? metalc14 D MN MN . B MN 601 1_555 P O HOH . B HOH 732 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? 
metalc ? metalc15 E MN MN . B MN 602 1_555 P O HOH . B HOH 711 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.798 ? 
metalc ? metalc16 F MN MN . B MN 603 1_555 P O HOH . B HOH 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? 
metalc ? metalc17 F MN MN . B MN 603 1_555 P O HOH . B HOH 713 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.738 ? 
metalc ? metalc18 F MN MN . B MN 603 1_555 P O HOH . B HOH 720 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? 
metalc ? metalc19 G MN MN . B MN 604 1_555 P O HOH . B HOH 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? 
metalc ? metalc20 G MN MN . B MN 604 1_555 P O HOH . B HOH 714 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? 
metalc ? metalc21 G MN MN . B MN 604 1_555 P O HOH . B HOH 727 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.555 ? 
#
_chem_comp.formula           'Mn 2' 
_chem_comp.formula_weight    54.938 
_chem_comp.id                MN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MANGANESE (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     8AY9 
_atom_sites.fract_transf_matrix[1][1]    0.023385 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015892 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005347 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 A8S A 1 301 301 A8S A8S . 
D 4 MN B 1 601 1 MN MN . 
E 4 MN B 1 602 2 MN MN . 
F 4 MN B 1 603 3 MN MN . 
G 4 MN B 1 604 4 MN MN . 
H 5 CL B 1 605 5 CL CL . 
I 5 CL B 1 606 6 CL CL . 
J 5 CL B 1 607 7 CL CL . 
K 5 CL B 1 608 8 CL CL . 
L 5 CL B 1 609 9 CL CL . 
M 5 CL B 1 610 10 CL CL . 
N 6 GOL B 1 611 21 GOL GOL . 
O 7 HOH A 1 401 23 HOH HOH . 
O 7 HOH A 2 402 41 HOH HOH . 
O 7 HOH A 3 403 8 HOH HOH . 
O 7 HOH A 4 404 32 HOH HOH . 
O 7 HOH A 5 405 46 HOH HOH . 
O 7 HOH A 6 406 10 HOH HOH . 
O 7 HOH A 7 407 45 HOH HOH . 
O 7 HOH A 8 408 42 HOH HOH . 
O 7 HOH A 9 409 2 HOH HOH . 
O 7 HOH A 10 410 1 HOH HOH . 
O 7 HOH A 11 411 17 HOH HOH . 
O 7 HOH A 12 412 4 HOH HOH . 
P 7 HOH B 1 701 22 HOH HOH . 
P 7 HOH B 2 702 27 HOH HOH . 
P 7 HOH B 3 703 33 HOH HOH . 
P 7 HOH B 4 704 40 HOH HOH . 
P 7 HOH B 5 705 9 HOH HOH . 
P 7 HOH B 6 706 14 HOH HOH . 
P 7 HOH B 7 707 38 HOH HOH . 
P 7 HOH B 8 708 43 HOH HOH . 
P 7 HOH B 9 709 16 HOH HOH . 
P 7 HOH B 10 710 5 HOH HOH . 
P 7 HOH B 11 711 20 HOH HOH . 
P 7 HOH B 12 712 13 HOH HOH . 
P 7 HOH B 13 713 34 HOH HOH . 
P 7 HOH B 14 714 7 HOH HOH . 
P 7 HOH B 15 715 15 HOH HOH . 
P 7 HOH B 16 716 44 HOH HOH . 
P 7 HOH B 17 717 6 HOH HOH . 
P 7 HOH B 18 718 28 HOH HOH . 
P 7 HOH B 19 719 30 HOH HOH . 
P 7 HOH B 20 720 12 HOH HOH . 
P 7 HOH B 21 721 11 HOH HOH . 
P 7 HOH B 22 722 31 HOH HOH . 
P 7 HOH B 23 723 25 HOH HOH . 
P 7 HOH B 24 724 19 HOH HOH . 
P 7 HOH B 25 725 18 HOH HOH . 
P 7 HOH B 26 726 29 HOH HOH . 
P 7 HOH B 27 727 24 HOH HOH . 
P 7 HOH B 28 728 39 HOH HOH . 
P 7 HOH B 29 729 3 HOH HOH . 
P 7 HOH B 30 730 37 HOH HOH . 
P 7 HOH B 31 731 36 HOH HOH . 
P 7 HOH B 32 732 35 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MN 
_atom_site.label_atom_id         MN 
_atom_site.label_comp_id         MN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               7.251 
_atom_site.Cartn_y               15.262 
_atom_site.Cartn_z               14.274 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        87.17 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MN 
_atom_site.auth_comp_id          MN 
_atom_site.auth_seq_id           601 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              25 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           321 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           1 
#