data_8AYH # _model_server_result.job_id qJkl_tY0hzlLT337mcRVQw _model_server_result.datetime_utc '2024-10-20 12:55:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ayh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1701}' # _entry.id 8AYH # _exptl.entry_id 8AYH _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 444.521 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '5-methoxy-2-[[(1~{S})-1-(2-methoxyphenyl)ethyl]carbamoylamino]-4-(4-methylpentoxy)benzoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8AYH _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8AYH _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 549 C CYS 567 1_555 B SG CYS 133 A CYS 810 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 616 C CYS 634 1_555 A SG CYS 651 C CYS 669 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 B SG CYS 21 A CYS 698 1_555 B SG CYS 47 A CYS 724 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 B SG CYS 22 A CYS 699 1_555 B SG CYS 54 A CYS 731 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf5 B SG CYS 34 A CYS 711 1_555 B SG CYS 55 A CYS 732 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf6 B SG CYS 179 A CYS 856 1_555 B SG CYS 206 A CYS 883 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf7 B SG CYS 424 A CYS 1101 1_555 B SG CYS 482 A CYS 1159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf8 B SG CYS 698 A CYS 1375 1_555 B SG CYS 828 A CYS 1505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf9 B SG CYS 728 A CYS 1405 1_555 B SG CYS 797 A CYS 1474 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf10 C SG CYS 544 B CYS 544 1_555 C SG CYS 801 B CYS 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf11 C SG CYS 609 B CYS 609 1_555 C SG CYS 644 B CYS 644 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf12 C SG CYS 1340 B CYS 1340 1_555 C SG CYS 1468 B CYS 1468 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf13 C SG CYS 1368 B CYS 1368 1_555 C SG CYS 1437 B CYS 1437 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf14 C SG CYS 1485 B CYS 1485 1_555 C SG CYS 1490 B CYS 1490 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc1 C O PRO 516 B PRO 516 1_555 E MG MG . B MG 2000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.846 ? metalc ? metalc2 C OD1 ASP 539 B ASP 539 1_555 E MG MG . B MG 2000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? metalc ? metalc3 C O VAL 540 B VAL 540 1_555 E MG MG . B MG 2000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.77 ? metalc ? metalc4 C OD1 ASP 542 B ASP 542 1_555 E MG MG . B MG 2000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? metalc ? metalc5 C OD2 ASP 542 B ASP 542 1_555 E MG MG . B MG 2000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.902 ? # _chem_comp.formula 'C24 H32 N2 O6' _chem_comp.formula_weight 444.521 _chem_comp.id H1H _chem_comp.mon_nstd_flag . _chem_comp.name '5-methoxy-2-[[(1~{S})-1-(2-methoxyphenyl)ethyl]carbamoylamino]-4-(4-methylpentoxy)benzoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C13 C11 H1H sing 129 n n C12 C11 H1H sing 130 n n C11 C10 H1H sing 131 n n C10 C9 H1H sing 132 n n C9 C8 H1H sing 133 n n C8 O7 H1H sing 134 n n O7 C1 H1H sing 135 n n O14 C15 H1H sing 136 n n O14 C2 H1H sing 137 n n C1 C2 H1H doub 138 n y C1 C6 H1H sing 139 n y C2 C3 H1H sing 140 n y C26 C25 H1H doub 141 n y C26 C27 H1H sing 142 n y C6 C5 H1H doub 143 n y C25 C24 H1H sing 144 n y O18 C17 H1H doub 145 n n C3 C4 H1H doub 146 n y C27 C21 H1H doub 147 n y C24 C23 H1H doub 148 n y C5 C4 H1H sing 149 n y C5 N16 H1H sing 150 n n C4 C30 H1H sing 151 n n C21 C23 H1H sing 152 n y C21 C20 H1H sing 153 n n C17 N16 H1H sing 154 n n C17 N19 H1H sing 155 n n C23 O28 H1H sing 156 n n C20 N19 H1H sing 157 n n C20 C22 H1H sing 158 n n O31 C30 H1H doub 159 n n O28 C29 H1H sing 160 n n C30 O32 H1H sing 161 n n C3 H1 H1H sing 162 n n C11 H2 H1H sing 163 n n C12 H3 H1H sing 164 n n C12 H4 H1H sing 165 n n C12 H5 H1H sing 166 n n C13 H6 H1H sing 167 n n C13 H7 H1H sing 168 n n C13 H8 H1H sing 169 n n C15 H9 H1H sing 170 n n C15 H10 H1H sing 171 n n C15 H11 H1H sing 172 n n C20 H12 H1H sing 173 n n C22 H13 H1H sing 174 n n C22 H14 H1H sing 175 n n C22 H15 H1H sing 176 n n C24 H16 H1H sing 177 n n C25 H17 H1H sing 178 n n C26 H18 H1H sing 179 n n C27 H19 H1H sing 180 n n C29 H20 H1H sing 181 n n C29 H21 H1H sing 182 n n C29 H22 H1H sing 183 n n C10 H23 H1H sing 184 n n C10 H24 H1H sing 185 n n C6 H25 H1H sing 186 n n C8 H26 H1H sing 187 n n C8 H27 H1H sing 188 n n C9 H28 H1H sing 189 n n C9 H29 H1H sing 190 n n N16 H30 H1H sing 191 n n N19 H31 H1H sing 192 n n O32 H32 H1H sing 193 n n # _atom_sites.entry_id 8AYH _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 H1H A 1 1701 1 H1H LI1 . E 5 MG B 1 2000 2000 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 H1H . . . D 4 114.632 157.307 87.169 1 70.9 ? C1 H1H 1701 A 1 HETATM 2 C C2 H1H . . . D 4 115.972 157.57 87.428 1 70.9 ? C2 H1H 1701 A 1 HETATM 3 C C3 H1H . . . D 4 116.302 158.462 88.448 1 70.9 ? C3 H1H 1701 A 1 HETATM 4 C C11 H1H . . . D 4 114.3 155.658 82.463 1 70.9 ? C11 H1H 1701 A 1 HETATM 5 C C12 H1H . . . D 4 113.632 154.274 82.266 1 70.9 ? C12 H1H 1701 A 1 HETATM 6 C C13 H1H . . . D 4 114.373 156.396 81.103 1 70.9 ? C13 H1H 1701 A 1 HETATM 7 C C15 H1H . . . D 4 118.221 156.572 87.212 1 70.9 ? C15 H1H 1701 A 1 HETATM 8 C C17 H1H . . . D 4 111.68 159.833 89.326 1 70.9 ? C17 H1H 1701 A 1 HETATM 9 C C20 H1H . . . D 4 109.49 160.778 89.872 1 70.9 ? C20 H1H 1701 A 1 HETATM 10 C C21 H1H . . . D 4 109.231 162.177 89.265 1 70.9 ? C21 H1H 1701 A 1 HETATM 11 C C22 H1H . . . D 4 108.574 160.583 91.104 1 70.9 ? C22 H1H 1701 A 1 HETATM 12 C C23 H1H . . . D 4 110.02 163.325 89.468 1 70.9 ? C23 H1H 1701 A 1 HETATM 13 C C24 H1H . . . D 4 109.649 164.526 88.856 1 70.9 ? C24 H1H 1701 A 1 HETATM 14 C C25 H1H . . . D 4 108.511 164.602 88.053 1 70.9 ? C25 H1H 1701 A 1 HETATM 15 C C26 H1H . . . D 4 107.724 163.47 87.855 1 70.9 ? C26 H1H 1701 A 1 HETATM 16 C C27 H1H . . . D 4 108.089 162.272 88.462 1 70.9 ? C27 H1H 1701 A 1 HETATM 17 C C29 H1H . . . D 4 111.361 164.213 91.346 1 70.9 ? C29 H1H 1701 A 1 HETATM 18 C C30 H1H . . . D 4 115.794 160.032 90.298 1 70.9 ? C30 H1H 1701 A 1 HETATM 19 C C10 H1H . . . D 4 113.521 156.524 83.489 1 70.9 ? C10 H1H 1701 A 1 HETATM 20 C C4 H1H . . . D 4 115.318 159.09 89.216 1 70.9 ? C4 H1H 1701 A 1 HETATM 21 C C5 H1H . . . D 4 113.964 158.842 88.947 1 70.9 ? C5 H1H 1701 A 1 HETATM 22 C C6 H1H . . . D 4 113.654 157.929 87.938 1 70.9 ? C6 H1H 1701 A 1 HETATM 23 C C8 H1H . . . D 4 112.903 156.092 85.937 1 70.9 ? C8 H1H 1701 A 1 HETATM 24 C C9 H1H . . . D 4 112.69 155.659 84.468 1 70.9 ? C9 H1H 1701 A 1 HETATM 25 N N16 H1H . . . D 4 112.926 159.442 89.721 1 70.9 ? N16 H1H 1701 A 1 HETATM 26 N N19 H1H . . . D 4 110.856 160.386 90.246 1 70.9 ? N19 H1H 1701 A 1 HETATM 27 O O14 H1H . . . D 4 116.949 156.938 86.658 1 70.9 ? O14 H1H 1701 A 1 HETATM 28 O O18 H1H . . . D 4 111.247 159.683 88.197 1 70.9 ? O18 H1H 1701 A 1 HETATM 29 O O28 H1H . . . D 4 111.165 163.286 90.27 1 70.9 ? O28 H1H 1701 A 1 HETATM 30 O O31 H1H . . . D 4 116.725 160.784 90.058 1 70.9 ? O31 H1H 1701 A 1 HETATM 31 O O32 H1H . . . D 4 115.22 160.029 91.505 1 70.9 ? O32 H1H 1701 A 1 HETATM 32 O O7 H1H . . . D 4 114.283 156.421 86.149 1 70.9 ? O7 H1H 1701 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 46 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 32 #