data_8AYO # _model_server_result.job_id rdXg6G1Yxli5TzsDM3UeNA _model_server_result.datetime_utc '2024-11-05 00:28:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ayo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":906}' # _entry.id 8AYO # _exptl.entry_id 8AYO _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 760.076 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8AYO _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8AYO _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 L N N ? 8 U N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 740 A CYS 714 1_555 A SG CYS 795 A CYS 769 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 B SG CYS 739 D CYS 718 1_555 B SG CYS 794 D CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 C SG CYS 740 C CYS 714 1_555 C SG CYS 795 C CYS 769 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 D SG CYS 52 I CYS 52 1_555 D SG CYS 91 I CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 D SG CYS 90 I CYS 90 1_555 D SG CYS 100 I CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf6 E SG CYS 52 J CYS 52 1_555 E SG CYS 91 J CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf7 E SG CYS 90 J CYS 90 1_555 E SG CYS 100 J CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf8 F SG CYS 739 B CYS 718 1_555 F SG CYS 794 B CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? # _chem_comp.formula 'C42 H82 N O8 P' _chem_comp.formula_weight 760.076 _chem_comp.id POV _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms POPC # _atom_sites.entry_id 8AYO _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 GLU A 1 901 1327 GLU GLU . H 5 CYZ A 1 902 1331 CYZ CYZ . I 6 OLC A 1 903 1501 OLC OLC . J 7 PLM A 1 904 1601 PLM PLM . K 7 PLM A 1 905 1701 PLM PLM . L 8 POV A 1 906 1901 POV POV . M 4 GLU D 1 901 1327 GLU GLU . N 5 CYZ D 1 902 1331 CYZ CYZ . O 6 OLC D 1 903 1501 OLC OLC . P 4 GLU C 1 901 1327 GLU GLU . Q 5 CYZ C 1 902 1331 CYZ CYZ . R 6 OLC C 1 903 1501 OLC OLC . S 7 PLM C 1 904 1601 PLM PLM . T 7 PLM C 1 905 1701 PLM PLM . U 8 POV C 1 906 1901 POV POV . V 7 PLM I 1 1801 1801 PLM PLM . W 9 OIJ I 1 1802 301 OIJ L01 . X 7 PLM I 1 1803 1601 PLM PLM . Y 7 PLM I 1 1804 1701 PLM PLM . Z 7 PLM J 1 1801 1801 PLM PLM . AA 7 PLM J 1 1802 1601 PLM PLM . BA 7 PLM J 1 1803 1701 PLM PLM . CA 9 OIJ J 1 1804 301 OIJ L01 . DA 4 GLU B 1 901 1327 GLU GLU . EA 5 CYZ B 1 902 1331 CYZ CYZ . FA 6 OLC B 1 903 1501 OLC OLC . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P POV . . . L 8 184.944 156.42 120.703 1 41.47 ? P POV 906 A 1 HETATM 2 C C1 POV . . . L 8 187.083 155.127 121.53 1 41.47 ? C1 POV 906 A 1 HETATM 3 C C2 POV . . . L 8 188.031 155.492 122.67 1 41.47 ? C2 POV 906 A 1 HETATM 4 C C3 POV . . . L 8 188.949 154.287 122.937 1 41.47 ? C3 POV 906 A 1 HETATM 5 C C210 POV . . . L 8 187.801 156.133 133.896 1 41.47 ? C210 POV 906 A 1 HETATM 6 C C310 POV . . . L 8 188.197 151.991 132.578 1 41.47 ? C310 POV 906 A 1 HETATM 7 O O11 POV . . . L 8 186.585 156.294 120.913 1 41.47 ? O11 POV 906 A 1 HETATM 8 C C211 POV . . . L 8 188.581 156.71 135.102 1 41.47 ? C211 POV 906 A 1 HETATM 9 C C311 POV . . . L 8 189.603 151.658 133.147 1 41.47 ? C311 POV 906 A 1 HETATM 10 O O12 POV . . . L 8 184.278 154.9 120.596 1 41.47 ? O12 POV 906 A 1 HETATM 11 C C312 POV . . . L 8 189.873 152.493 134.431 1 41.47 ? C312 POV 906 A 1 HETATM 12 O O13 POV . . . L 8 184.658 157.185 119.427 1 41.47 ? O13 POV 906 A 1 HETATM 13 C C313 POV . . . L 8 191.359 152.328 134.847 1 41.47 ? C313 POV 906 A 1 HETATM 14 O O14 POV . . . L 8 184.338 157.156 121.879 1 41.47 ? O14 POV 906 A 1 HETATM 15 C C21 POV . . . L 8 187.937 155.691 125.054 1 41.47 ? C21 POV 906 A 1 HETATM 16 O O21 POV . . . L 8 187.278 155.827 123.811 1 41.47 ? O21 POV 906 A 1 HETATM 17 C C22 POV . . . L 8 188.866 156.808 125.577 1 41.47 ? C22 POV 906 A 1 HETATM 18 O O22 POV . . . L 8 187.775 154.715 125.702 1 41.47 ? O22 POV 906 A 1 HETATM 19 C C23 POV . . . L 8 188.521 157.114 127.057 1 41.47 ? C23 POV 906 A 1 HETATM 20 C C24 POV . . . L 8 189.194 156.075 127.986 1 41.47 ? C24 POV 906 A 1 HETATM 21 C C25 POV . . . L 8 188.85 156.388 129.464 1 41.47 ? C25 POV 906 A 1 HETATM 22 C C26 POV . . . L 8 189.699 157.589 129.958 1 41.47 ? C26 POV 906 A 1 HETATM 23 C C27 POV . . . L 8 188.917 158.351 131.059 1 41.47 ? C27 POV 906 A 1 HETATM 24 C C28 POV . . . L 8 189.139 157.661 132.433 1 41.47 ? C28 POV 906 A 1 HETATM 25 C C29 POV . . . L 8 188.057 156.573 132.656 1 41.47 ? C29 POV 906 A 1 HETATM 26 C C31 POV . . . L 8 188.389 151.982 122.94 1 41.47 ? C31 POV 906 A 1 HETATM 27 O O31 POV . . . L 8 188.216 153.243 123.55 1 41.47 ? O31 POV 906 A 1 HETATM 28 C C32 POV . . . L 8 188.818 150.773 123.795 1 41.47 ? C32 POV 906 A 1 HETATM 29 O O32 POV . . . L 8 188.198 151.846 121.774 1 41.47 ? O32 POV 906 A 1 HETATM 30 C C33 POV . . . L 8 189.407 151.291 125.133 1 41.47 ? C33 POV 906 A 1 HETATM 31 C C34 POV . . . L 8 188.384 151.039 126.27 1 41.47 ? C34 POV 906 A 1 HETATM 32 C C35 POV . . . L 8 189.031 151.423 127.625 1 41.47 ? C35 POV 906 A 1 HETATM 33 C C36 POV . . . L 8 187.934 151.99 128.57 1 41.47 ? C36 POV 906 A 1 HETATM 34 C C37 POV . . . L 8 186.636 151.35 129.139 1 41.47 ? C37 POV 906 A 1 HETATM 35 C C38 POV . . . L 8 186.586 151.603 130.668 1 41.47 ? C38 POV 906 A 1 HETATM 36 C C39 POV . . . L 8 187.942 151.164 131.292 1 41.47 ? C39 POV 906 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 36 #