data_8AZD # _model_server_result.job_id mMISDJvhdTwz-84WM-tsqQ _model_server_result.datetime_utc '2024-11-21 09:00:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8azd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":201}' # _entry.id 8AZD # _exptl.entry_id 8AZD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 559.316 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ADENOSINE-5-DIPHOSPHORIBOSE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8AZD _cell.length_a 59.534 _cell.length_b 76.01 _cell.length_c 82.848 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8AZD _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C15 H23 N5 O14 P2' _chem_comp.formula_weight 559.316 _chem_comp.id APR _chem_comp.mon_nstd_flag . _chem_comp.name ADENOSINE-5-DIPHOSPHORIBOSE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 APR sing 13 n y N1 C6 APR doub 14 n y C2 N3 APR doub 15 n y C2 H2 APR sing 16 n n N3 C4 APR sing 17 n y C4 C5 APR doub 18 n y C4 N9 APR sing 19 n y C5 C6 APR sing 20 n y C5 N7 APR sing 21 n y C6 N6 APR sing 22 n n N6 H61 APR sing 23 n n N6 H62 APR sing 24 n n N7 C8 APR doub 25 n y C8 N9 APR sing 26 n y C8 H8 APR sing 27 n n N9 C1' APR sing 28 n n C1' C2' APR sing 29 n n C1' O4' APR sing 30 n n C1' "H'1" APR sing 31 n n C2' O2' APR sing 32 n n C2' C3' APR sing 33 n n C2' "H'2" APR sing 34 n n O2' "HO'2" APR sing 35 n n C3' O3' APR sing 36 n n C3' C4' APR sing 37 n n C3' "H'3" APR sing 38 n n O3' "HO'3" APR sing 39 n n O4' C4' APR sing 40 n n C4' C5' APR sing 41 n n C4' "H'4" APR sing 42 n n C5' O5' APR sing 43 n n C5' "H5'1" APR sing 44 n n C5' "H5'2" APR sing 45 n n O5' PA APR sing 46 n n PA O1A APR doub 47 n n PA O2A APR sing 48 n n PA O3A APR sing 49 n n O2A HOA2 APR sing 50 n n O3A PB APR sing 51 n n PB O1B APR doub 52 n n PB O2B APR sing 53 n n PB O5D APR sing 54 n n O2B HOB2 APR sing 55 n n O5D C5D APR sing 56 n n C5D C4D APR sing 57 n n C5D H5R1 APR sing 58 n n C5D H5R2 APR sing 59 n n O4D C1D APR sing 60 n n O4D C4D APR sing 61 n n O1D C1D APR sing 62 n n O1D HOR1 APR sing 63 n n C1D C2D APR sing 64 n n C1D "HR'1" APR sing 65 n n O2D C2D APR sing 66 n n O2D HOR2 APR sing 67 n n C2D C3D APR sing 68 n n C2D "HR'2" APR sing 69 n n O3D C3D APR sing 70 n n O3D HOR3 APR sing 71 n n C3D C4D APR sing 72 n n C3D "HR'3" APR sing 73 n n C4D "HR'4" APR sing 74 n n # _atom_sites.entry_id 8AZD _atom_sites.fract_transf_matrix[1][1] 0.016797 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013156 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01207 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 APR A 1 201 1 APR LIG . D 2 APR B 1 201 2 APR LIG . E 3 HOH A 1 301 205 HOH HOH . E 3 HOH A 2 302 197 HOH HOH . E 3 HOH A 3 303 130 HOH HOH . E 3 HOH A 4 304 15 HOH HOH . E 3 HOH A 5 305 67 HOH HOH . E 3 HOH A 6 306 91 HOH HOH . E 3 HOH A 7 307 132 HOH HOH . E 3 HOH A 8 308 68 HOH HOH . E 3 HOH A 9 309 156 HOH HOH . E 3 HOH A 10 310 164 HOH HOH . E 3 HOH A 11 311 118 HOH HOH . E 3 HOH A 12 312 176 HOH HOH . E 3 HOH A 13 313 102 HOH HOH . E 3 HOH A 14 314 107 HOH HOH . E 3 HOH A 15 315 10 HOH HOH . E 3 HOH A 16 316 32 HOH HOH . E 3 HOH A 17 317 5 HOH HOH . E 3 HOH A 18 318 51 HOH HOH . E 3 HOH A 19 319 100 HOH HOH . E 3 HOH A 20 320 200 HOH HOH . E 3 HOH A 21 321 63 HOH HOH . E 3 HOH A 22 322 105 HOH HOH . E 3 HOH A 23 323 4 HOH HOH . E 3 HOH A 24 324 1 HOH HOH . E 3 HOH A 25 325 25 HOH HOH . E 3 HOH A 26 326 69 HOH HOH . E 3 HOH A 27 327 35 HOH HOH . E 3 HOH A 28 328 87 HOH HOH . E 3 HOH A 29 329 89 HOH HOH . E 3 HOH A 30 330 133 HOH HOH . E 3 HOH A 31 331 61 HOH HOH . E 3 HOH A 32 332 12 HOH HOH . E 3 HOH A 33 333 82 HOH HOH . E 3 HOH A 34 334 31 HOH HOH . E 3 HOH A 35 335 38 HOH HOH . E 3 HOH A 36 336 99 HOH HOH . E 3 HOH A 37 337 23 HOH HOH . E 3 HOH A 38 338 13 HOH HOH . E 3 HOH A 39 339 17 HOH HOH . E 3 HOH A 40 340 113 HOH HOH . E 3 HOH A 41 341 159 HOH HOH . E 3 HOH A 42 342 182 HOH HOH . E 3 HOH A 43 343 153 HOH HOH . E 3 HOH A 44 344 44 HOH HOH . E 3 HOH A 45 345 81 HOH HOH . E 3 HOH A 46 346 53 HOH HOH . E 3 HOH A 47 347 40 HOH HOH . E 3 HOH A 48 348 71 HOH HOH . E 3 HOH A 49 349 88 HOH HOH . E 3 HOH A 50 350 9 HOH HOH . E 3 HOH A 51 351 198 HOH HOH . E 3 HOH A 52 352 41 HOH HOH . E 3 HOH A 53 353 24 HOH HOH . E 3 HOH A 54 354 137 HOH HOH . E 3 HOH A 55 355 48 HOH HOH . E 3 HOH A 56 356 29 HOH HOH . E 3 HOH A 57 357 70 HOH HOH . E 3 HOH A 58 358 206 HOH HOH . E 3 HOH A 59 359 34 HOH HOH . E 3 HOH A 60 360 123 HOH HOH . E 3 HOH A 61 361 158 HOH HOH . E 3 HOH A 62 362 55 HOH HOH . E 3 HOH A 63 363 94 HOH HOH . E 3 HOH A 64 364 33 HOH HOH . E 3 HOH A 65 365 92 HOH HOH . E 3 HOH A 66 366 138 HOH HOH . E 3 HOH A 67 367 11 HOH HOH . E 3 HOH A 68 368 150 HOH HOH . E 3 HOH A 69 369 187 HOH HOH . E 3 HOH A 70 370 141 HOH HOH . E 3 HOH A 71 371 115 HOH HOH . E 3 HOH A 72 372 103 HOH HOH . E 3 HOH A 73 373 167 HOH HOH . E 3 HOH A 74 374 116 HOH HOH . E 3 HOH A 75 375 161 HOH HOH . E 3 HOH A 76 376 163 HOH HOH . E 3 HOH A 77 377 27 HOH HOH . E 3 HOH A 78 378 129 HOH HOH . E 3 HOH A 79 379 126 HOH HOH . E 3 HOH A 80 380 120 HOH HOH . E 3 HOH A 81 381 174 HOH HOH . E 3 HOH A 82 382 168 HOH HOH . E 3 HOH A 83 383 202 HOH HOH . E 3 HOH A 84 384 188 HOH HOH . E 3 HOH A 85 385 199 HOH HOH . E 3 HOH A 86 386 111 HOH HOH . E 3 HOH A 87 387 184 HOH HOH . E 3 HOH A 88 388 208 HOH HOH . E 3 HOH A 89 389 183 HOH HOH . E 3 HOH A 90 390 213 HOH HOH . E 3 HOH A 91 391 148 HOH HOH . E 3 HOH A 92 392 49 HOH HOH . E 3 HOH A 93 393 201 HOH HOH . E 3 HOH A 94 394 204 HOH HOH . E 3 HOH A 95 395 119 HOH HOH . E 3 HOH A 96 396 117 HOH HOH . E 3 HOH A 97 397 155 HOH HOH . E 3 HOH A 98 398 214 HOH HOH . E 3 HOH A 99 399 169 HOH HOH . E 3 HOH A 100 400 144 HOH HOH . E 3 HOH A 101 401 57 HOH HOH . E 3 HOH A 102 402 147 HOH HOH . E 3 HOH A 103 403 179 HOH HOH . E 3 HOH A 104 404 135 HOH HOH . E 3 HOH A 105 405 216 HOH HOH . E 3 HOH A 106 406 207 HOH HOH . E 3 HOH A 107 407 160 HOH HOH . E 3 HOH A 108 408 189 HOH HOH . E 3 HOH A 109 409 173 HOH HOH . F 3 HOH B 1 301 65 HOH HOH . F 3 HOH B 2 302 78 HOH HOH . F 3 HOH B 3 303 36 HOH HOH . F 3 HOH B 4 304 97 HOH HOH . F 3 HOH B 5 305 193 HOH HOH . F 3 HOH B 6 306 127 HOH HOH . F 3 HOH B 7 307 142 HOH HOH . F 3 HOH B 8 308 14 HOH HOH . F 3 HOH B 9 309 151 HOH HOH . F 3 HOH B 10 310 64 HOH HOH . F 3 HOH B 11 311 177 HOH HOH . F 3 HOH B 12 312 20 HOH HOH . F 3 HOH B 13 313 149 HOH HOH . F 3 HOH B 14 314 101 HOH HOH . F 3 HOH B 15 315 134 HOH HOH . F 3 HOH B 16 316 46 HOH HOH . F 3 HOH B 17 317 121 HOH HOH . F 3 HOH B 18 318 8 HOH HOH . F 3 HOH B 19 319 66 HOH HOH . F 3 HOH B 20 320 80 HOH HOH . F 3 HOH B 21 321 7 HOH HOH . F 3 HOH B 22 322 73 HOH HOH . F 3 HOH B 23 323 2 HOH HOH . F 3 HOH B 24 324 178 HOH HOH . F 3 HOH B 25 325 19 HOH HOH . F 3 HOH B 26 326 47 HOH HOH . F 3 HOH B 27 327 3 HOH HOH . F 3 HOH B 28 328 58 HOH HOH . F 3 HOH B 29 329 30 HOH HOH . F 3 HOH B 30 330 18 HOH HOH . F 3 HOH B 31 331 125 HOH HOH . F 3 HOH B 32 332 54 HOH HOH . F 3 HOH B 33 333 95 HOH HOH . F 3 HOH B 34 334 112 HOH HOH . F 3 HOH B 35 335 215 HOH HOH . F 3 HOH B 36 336 62 HOH HOH . F 3 HOH B 37 337 50 HOH HOH . F 3 HOH B 38 338 16 HOH HOH . F 3 HOH B 39 339 75 HOH HOH . F 3 HOH B 40 340 52 HOH HOH . F 3 HOH B 41 341 43 HOH HOH . F 3 HOH B 42 342 191 HOH HOH . F 3 HOH B 43 343 145 HOH HOH . F 3 HOH B 44 344 109 HOH HOH . F 3 HOH B 45 345 110 HOH HOH . F 3 HOH B 46 346 203 HOH HOH . F 3 HOH B 47 347 139 HOH HOH . F 3 HOH B 48 348 104 HOH HOH . F 3 HOH B 49 349 154 HOH HOH . F 3 HOH B 50 350 166 HOH HOH . F 3 HOH B 51 351 108 HOH HOH . F 3 HOH B 52 352 60 HOH HOH . F 3 HOH B 53 353 42 HOH HOH . F 3 HOH B 54 354 76 HOH HOH . F 3 HOH B 55 355 37 HOH HOH . F 3 HOH B 56 356 172 HOH HOH . F 3 HOH B 57 357 39 HOH HOH . F 3 HOH B 58 358 6 HOH HOH . F 3 HOH B 59 359 72 HOH HOH . F 3 HOH B 60 360 74 HOH HOH . F 3 HOH B 61 361 45 HOH HOH . F 3 HOH B 62 362 83 HOH HOH . F 3 HOH B 63 363 90 HOH HOH . F 3 HOH B 64 364 22 HOH HOH . F 3 HOH B 65 365 146 HOH HOH . F 3 HOH B 66 366 106 HOH HOH . F 3 HOH B 67 367 131 HOH HOH . F 3 HOH B 68 368 192 HOH HOH . F 3 HOH B 69 369 79 HOH HOH . F 3 HOH B 70 370 96 HOH HOH . F 3 HOH B 71 371 165 HOH HOH . F 3 HOH B 72 372 170 HOH HOH . F 3 HOH B 73 373 77 HOH HOH . F 3 HOH B 74 374 181 HOH HOH . F 3 HOH B 75 375 171 HOH HOH . F 3 HOH B 76 376 175 HOH HOH . F 3 HOH B 77 377 122 HOH HOH . F 3 HOH B 78 378 185 HOH HOH . F 3 HOH B 79 379 28 HOH HOH . F 3 HOH B 80 380 84 HOH HOH . F 3 HOH B 81 381 85 HOH HOH . F 3 HOH B 82 382 124 HOH HOH . F 3 HOH B 83 383 217 HOH HOH . F 3 HOH B 84 384 128 HOH HOH . F 3 HOH B 85 385 21 HOH HOH . F 3 HOH B 86 386 93 HOH HOH . F 3 HOH B 87 387 56 HOH HOH . F 3 HOH B 88 388 86 HOH HOH . F 3 HOH B 89 389 195 HOH HOH . F 3 HOH B 90 390 98 HOH HOH . F 3 HOH B 91 391 210 HOH HOH . F 3 HOH B 92 392 180 HOH HOH . F 3 HOH B 93 393 209 HOH HOH . F 3 HOH B 94 394 140 HOH HOH . F 3 HOH B 95 395 211 HOH HOH . F 3 HOH B 96 396 212 HOH HOH . F 3 HOH B 97 397 152 HOH HOH . F 3 HOH B 98 398 194 HOH HOH . F 3 HOH B 99 399 162 HOH HOH . F 3 HOH B 100 400 190 HOH HOH . F 3 HOH B 101 401 114 HOH HOH . F 3 HOH B 102 402 143 HOH HOH . F 3 HOH B 103 403 157 HOH HOH . F 3 HOH B 104 404 186 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 APR . . . D 2 -37.656 -0.05 7.115 1 25.85 ? N1 APR 201 B 1 HETATM 2 C C2 APR . . . D 2 -38.216 0.564 8.13 1 23.7 ? C2 APR 201 B 1 HETATM 3 N N3 APR . . . D 2 -38.152 1.89 8.278 1 25.43 ? N3 APR 201 B 1 HETATM 4 C C4 APR . . . D 2 -37.477 2.651 7.406 1 24.36 ? C4 APR 201 B 1 HETATM 5 C C5 APR . . . D 2 -36.865 2.08 6.333 1 26.36 ? C5 APR 201 B 1 HETATM 6 C C6 APR . . . D 2 -36.986 0.654 6.219 1 25.41 ? C6 APR 201 B 1 HETATM 7 N N6 APR . . . D 2 -36.33 -0.081 5.065 1 24.98 ? N6 APR 201 B 1 HETATM 8 N N7 APR . . . D 2 -36.296 3.081 5.635 1 23.87 ? N7 APR 201 B 1 HETATM 9 C C8 APR . . . D 2 -36.537 4.224 6.268 1 26.56 ? C8 APR 201 B 1 HETATM 10 N N9 APR . . . D 2 -37.255 3.968 7.342 1 25.01 ? N9 APR 201 B 1 HETATM 11 C C1' APR . . . D 2 -37.777 4.865 8.292 1 25.79 ? C1' APR 201 B 1 HETATM 12 C C2' APR . . . D 2 -37.044 6.341 8.214 1 28.86 ? C2' APR 201 B 1 HETATM 13 O O2' APR . . . D 2 -35.736 6.323 8.887 1 33.21 ? O2' APR 201 B 1 HETATM 14 C C3' APR . . . D 2 -37.88 7.108 8.797 1 28.08 ? C3' APR 201 B 1 HETATM 15 O O3' APR . . . D 2 -37.758 6.927 10.336 1 30.83 ? O3' APR 201 B 1 HETATM 16 O O4' APR . . . D 2 -39.023 5.065 8.036 1 26.07 ? O4' APR 201 B 1 HETATM 17 C C4' APR . . . D 2 -39.276 6.565 8.321 1 27.32 ? C4' APR 201 B 1 HETATM 18 C C5' APR . . . D 2 -39.789 7.206 7.191 1 23.97 ? C5' APR 201 B 1 HETATM 19 O O5' APR . . . D 2 -38.773 7.848 6.464 1 27.61 ? O5' APR 201 B 1 HETATM 20 P PA APR . . . D 2 -38.932 8.035 4.838 1 29.92 ? PA APR 201 B 1 HETATM 21 O O1A APR . . . D 2 -37.788 8.923 4.316 1 30.83 ? O1A APR 201 B 1 HETATM 22 O O2A APR . . . D 2 -38.961 6.722 4.203 1 28.83 ? O2A APR 201 B 1 HETATM 23 O O3A APR . . . D 2 -40.415 8.708 4.634 1 27.24 ? O3A APR 201 B 1 HETATM 24 P PB APR . . . D 2 -40.744 10.297 4.668 1 27.54 ? PB APR 201 B 1 HETATM 25 O O1B APR . . . D 2 -40.042 10.966 5.845 1 30.92 ? O1B APR 201 B 1 HETATM 26 O O2B APR . . . D 2 -42.276 10.469 4.734 1 24.65 ? O2B APR 201 B 1 HETATM 27 O O5D APR . . . D 2 -40.198 10.97 3.268 1 32.52 ? O5D APR 201 B 1 HETATM 28 C C5D APR . . . D 2 -40.934 10.652 2.101 1 29.27 ? C5D APR 201 B 1 HETATM 29 O O4D APR . . . D 2 -39.009 10.086 1.031 1 33.59 ? O4D APR 201 B 1 HETATM 30 O O1D APR . . . D 2 -38.569 8.015 -0.113 1 35.82 ? O1D APR 201 B 1 HETATM 31 C C1D APR . . . D 2 -38.945 9.304 -0.333 1 36.02 ? C1D APR 201 B 1 HETATM 32 O O2D APR . . . D 2 -40.463 9.053 -2.193 1 34.52 ? O2D APR 201 B 1 HETATM 33 C C2D APR . . . D 2 -40.445 9.327 -0.8 1 31.84 ? C2D APR 201 B 1 HETATM 34 O O3D APR . . . D 2 -40.392 11.547 -1.455 1 28.96 ? O3D APR 201 B 1 HETATM 35 C C3D APR . . . D 2 -40.835 10.543 -0.493 1 32.55 ? C3D APR 201 B 1 HETATM 36 C C4D APR . . . D 2 -40.055 10.877 0.958 1 31.77 ? C4D APR 201 B 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 36 #