data_8AZZ # _model_server_result.job_id vqYDVs9Tv_mZC4x_2q7SSA _model_server_result.datetime_utc '2024-11-29 12:05:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8azz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 8AZZ # _exptl.entry_id 8AZZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8AZZ _cell.length_a 86.476 _cell.length_b 40.709 _cell.length_c 55.989 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8AZZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall 'P 2 2ab' _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 18 A SER 17 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc2 B O2B GDP . A GDP 201 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc3 C MG MG . A MG 202 1_555 G O HOH . A HOH 327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? metalc ? metalc4 C MG MG . A MG 202 1_555 G O HOH . A HOH 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc5 C MG MG . A MG 202 1_555 G O HOH . A HOH 344 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc6 C MG MG . A MG 202 1_555 G O HOH . A HOH 379 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 8AZZ _atom_sites.fract_transf_matrix[1][1] 0.011564 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024565 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017861 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GDP A 1 201 201 GDP GDP . C 3 MG A 1 202 202 MG MG . D 4 EDO A 1 203 301 EDO EDO . E 4 EDO A 1 204 302 EDO EDO . F 5 OFU A 1 205 1 OFU LIG . G 6 HOH A 1 301 253 HOH HOH . G 6 HOH A 2 302 234 HOH HOH . G 6 HOH A 3 303 273 HOH HOH . G 6 HOH A 4 304 228 HOH HOH . G 6 HOH A 5 305 114 HOH HOH . G 6 HOH A 6 306 252 HOH HOH . G 6 HOH A 7 307 90 HOH HOH . G 6 HOH A 8 308 219 HOH HOH . G 6 HOH A 9 309 102 HOH HOH . G 6 HOH A 10 310 197 HOH HOH . G 6 HOH A 11 311 207 HOH HOH . G 6 HOH A 12 312 25 HOH HOH . G 6 HOH A 13 313 74 HOH HOH . G 6 HOH A 14 314 42 HOH HOH . G 6 HOH A 15 315 259 HOH HOH . G 6 HOH A 16 316 128 HOH HOH . G 6 HOH A 17 317 196 HOH HOH . G 6 HOH A 18 318 14 HOH HOH . G 6 HOH A 19 319 72 HOH HOH . G 6 HOH A 20 320 149 HOH HOH . G 6 HOH A 21 321 31 HOH HOH . G 6 HOH A 22 322 18 HOH HOH . G 6 HOH A 23 323 97 HOH HOH . G 6 HOH A 24 324 21 HOH HOH . G 6 HOH A 25 325 81 HOH HOH . G 6 HOH A 26 326 9 HOH HOH . G 6 HOH A 27 327 232 HOH HOH . G 6 HOH A 28 328 218 HOH HOH . G 6 HOH A 29 329 40 HOH HOH . G 6 HOH A 30 330 52 HOH HOH . G 6 HOH A 31 331 110 HOH HOH . G 6 HOH A 32 332 119 HOH HOH . G 6 HOH A 33 333 27 HOH HOH . G 6 HOH A 34 334 51 HOH HOH . G 6 HOH A 35 335 88 HOH HOH . G 6 HOH A 36 336 55 HOH HOH . G 6 HOH A 37 337 230 HOH HOH . G 6 HOH A 38 338 113 HOH HOH . G 6 HOH A 39 339 71 HOH HOH . G 6 HOH A 40 340 96 HOH HOH . G 6 HOH A 41 341 10 HOH HOH . G 6 HOH A 42 342 48 HOH HOH . G 6 HOH A 43 343 54 HOH HOH . G 6 HOH A 44 344 229 HOH HOH . G 6 HOH A 45 345 70 HOH HOH . G 6 HOH A 46 346 233 HOH HOH . G 6 HOH A 47 347 94 HOH HOH . G 6 HOH A 48 348 99 HOH HOH . G 6 HOH A 49 349 92 HOH HOH . G 6 HOH A 50 350 32 HOH HOH . G 6 HOH A 51 351 49 HOH HOH . G 6 HOH A 52 352 50 HOH HOH . G 6 HOH A 53 353 77 HOH HOH . G 6 HOH A 54 354 132 HOH HOH . G 6 HOH A 55 355 53 HOH HOH . G 6 HOH A 56 356 33 HOH HOH . G 6 HOH A 57 357 8 HOH HOH . G 6 HOH A 58 358 4 HOH HOH . G 6 HOH A 59 359 79 HOH HOH . G 6 HOH A 60 360 39 HOH HOH . G 6 HOH A 61 361 30 HOH HOH . G 6 HOH A 62 362 7 HOH HOH . G 6 HOH A 63 363 91 HOH HOH . G 6 HOH A 64 364 68 HOH HOH . G 6 HOH A 65 365 272 HOH HOH . G 6 HOH A 66 366 106 HOH HOH . G 6 HOH A 67 367 1 HOH HOH . G 6 HOH A 68 368 258 HOH HOH . G 6 HOH A 69 369 26 HOH HOH . G 6 HOH A 70 370 5 HOH HOH . G 6 HOH A 71 371 111 HOH HOH . G 6 HOH A 72 372 12 HOH HOH . G 6 HOH A 73 373 15 HOH HOH . G 6 HOH A 74 374 13 HOH HOH . G 6 HOH A 75 375 121 HOH HOH . G 6 HOH A 76 376 58 HOH HOH . G 6 HOH A 77 377 56 HOH HOH . G 6 HOH A 78 378 2 HOH HOH . G 6 HOH A 79 379 231 HOH HOH . G 6 HOH A 80 380 60 HOH HOH . G 6 HOH A 81 381 62 HOH HOH . G 6 HOH A 82 382 11 HOH HOH . G 6 HOH A 83 383 75 HOH HOH . G 6 HOH A 84 384 86 HOH HOH . G 6 HOH A 85 385 45 HOH HOH . G 6 HOH A 86 386 63 HOH HOH . G 6 HOH A 87 387 137 HOH HOH . G 6 HOH A 88 388 159 HOH HOH . G 6 HOH A 89 389 103 HOH HOH . G 6 HOH A 90 390 264 HOH HOH . G 6 HOH A 91 391 23 HOH HOH . G 6 HOH A 92 392 205 HOH HOH . G 6 HOH A 93 393 191 HOH HOH . G 6 HOH A 94 394 108 HOH HOH . G 6 HOH A 95 395 122 HOH HOH . G 6 HOH A 96 396 85 HOH HOH . G 6 HOH A 97 397 3 HOH HOH . G 6 HOH A 98 398 41 HOH HOH . G 6 HOH A 99 399 276 HOH HOH . G 6 HOH A 100 400 6 HOH HOH . G 6 HOH A 101 401 19 HOH HOH . G 6 HOH A 102 402 130 HOH HOH . G 6 HOH A 103 403 59 HOH HOH . G 6 HOH A 104 404 44 HOH HOH . G 6 HOH A 105 405 95 HOH HOH . G 6 HOH A 106 406 28 HOH HOH . G 6 HOH A 107 407 112 HOH HOH . G 6 HOH A 108 408 78 HOH HOH . G 6 HOH A 109 409 80 HOH HOH . G 6 HOH A 110 410 247 HOH HOH . G 6 HOH A 111 411 43 HOH HOH . G 6 HOH A 112 412 123 HOH HOH . G 6 HOH A 113 413 67 HOH HOH . G 6 HOH A 114 414 260 HOH HOH . G 6 HOH A 115 415 262 HOH HOH . G 6 HOH A 116 416 204 HOH HOH . G 6 HOH A 117 417 215 HOH HOH . G 6 HOH A 118 418 131 HOH HOH . G 6 HOH A 119 419 16 HOH HOH . G 6 HOH A 120 420 142 HOH HOH . G 6 HOH A 121 421 36 HOH HOH . G 6 HOH A 122 422 35 HOH HOH . G 6 HOH A 123 423 87 HOH HOH . G 6 HOH A 124 424 20 HOH HOH . G 6 HOH A 125 425 38 HOH HOH . G 6 HOH A 126 426 66 HOH HOH . G 6 HOH A 127 427 152 HOH HOH . G 6 HOH A 128 428 57 HOH HOH . G 6 HOH A 129 429 64 HOH HOH . G 6 HOH A 130 430 105 HOH HOH . G 6 HOH A 131 431 120 HOH HOH . G 6 HOH A 132 432 47 HOH HOH . G 6 HOH A 133 433 17 HOH HOH . G 6 HOH A 134 434 46 HOH HOH . G 6 HOH A 135 435 133 HOH HOH . G 6 HOH A 136 436 24 HOH HOH . G 6 HOH A 137 437 283 HOH HOH . G 6 HOH A 138 438 238 HOH HOH . G 6 HOH A 139 439 22 HOH HOH . G 6 HOH A 140 440 29 HOH HOH . G 6 HOH A 141 441 101 HOH HOH . G 6 HOH A 142 442 61 HOH HOH . G 6 HOH A 143 443 127 HOH HOH . G 6 HOH A 144 444 246 HOH HOH . G 6 HOH A 145 445 148 HOH HOH . G 6 HOH A 146 446 138 HOH HOH . G 6 HOH A 147 447 201 HOH HOH . G 6 HOH A 148 448 156 HOH HOH . G 6 HOH A 149 449 82 HOH HOH . G 6 HOH A 150 450 118 HOH HOH . G 6 HOH A 151 451 192 HOH HOH . G 6 HOH A 152 452 115 HOH HOH . G 6 HOH A 153 453 69 HOH HOH . G 6 HOH A 154 454 98 HOH HOH . G 6 HOH A 155 455 83 HOH HOH . G 6 HOH A 156 456 140 HOH HOH . G 6 HOH A 157 457 37 HOH HOH . G 6 HOH A 158 458 76 HOH HOH . G 6 HOH A 159 459 34 HOH HOH . G 6 HOH A 160 460 135 HOH HOH . G 6 HOH A 161 461 175 HOH HOH . G 6 HOH A 162 462 182 HOH HOH . G 6 HOH A 163 463 89 HOH HOH . G 6 HOH A 164 464 155 HOH HOH . G 6 HOH A 165 465 186 HOH HOH . G 6 HOH A 166 466 93 HOH HOH . G 6 HOH A 167 467 125 HOH HOH . G 6 HOH A 168 468 145 HOH HOH . G 6 HOH A 169 469 268 HOH HOH . G 6 HOH A 170 470 150 HOH HOH . G 6 HOH A 171 471 157 HOH HOH . G 6 HOH A 172 472 282 HOH HOH . G 6 HOH A 173 473 134 HOH HOH . G 6 HOH A 174 474 146 HOH HOH . G 6 HOH A 175 475 216 HOH HOH . G 6 HOH A 176 476 239 HOH HOH . G 6 HOH A 177 477 147 HOH HOH . G 6 HOH A 178 478 208 HOH HOH . G 6 HOH A 179 479 158 HOH HOH . G 6 HOH A 180 480 255 HOH HOH . G 6 HOH A 181 481 237 HOH HOH . G 6 HOH A 182 482 227 HOH HOH . G 6 HOH A 183 483 136 HOH HOH . G 6 HOH A 184 484 250 HOH HOH . G 6 HOH A 185 485 100 HOH HOH . G 6 HOH A 186 486 73 HOH HOH . G 6 HOH A 187 487 104 HOH HOH . G 6 HOH A 188 488 124 HOH HOH . G 6 HOH A 189 489 256 HOH HOH . G 6 HOH A 190 490 249 HOH HOH . G 6 HOH A 191 491 257 HOH HOH . G 6 HOH A 192 492 213 HOH HOH . G 6 HOH A 193 493 173 HOH HOH . G 6 HOH A 194 494 220 HOH HOH . G 6 HOH A 195 495 143 HOH HOH . G 6 HOH A 196 496 275 HOH HOH . G 6 HOH A 197 497 184 HOH HOH . G 6 HOH A 198 498 153 HOH HOH . G 6 HOH A 199 499 183 HOH HOH . G 6 HOH A 200 500 269 HOH HOH . G 6 HOH A 201 501 107 HOH HOH . G 6 HOH A 202 502 244 HOH HOH . G 6 HOH A 203 503 206 HOH HOH . G 6 HOH A 204 504 181 HOH HOH . G 6 HOH A 205 505 263 HOH HOH . G 6 HOH A 206 506 279 HOH HOH . G 6 HOH A 207 507 65 HOH HOH . G 6 HOH A 208 508 129 HOH HOH . G 6 HOH A 209 509 270 HOH HOH . G 6 HOH A 210 510 187 HOH HOH . G 6 HOH A 211 511 163 HOH HOH . G 6 HOH A 212 512 224 HOH HOH . G 6 HOH A 213 513 151 HOH HOH . G 6 HOH A 214 514 226 HOH HOH . G 6 HOH A 215 515 261 HOH HOH . G 6 HOH A 216 516 209 HOH HOH . G 6 HOH A 217 517 203 HOH HOH . G 6 HOH A 218 518 212 HOH HOH . G 6 HOH A 219 519 202 HOH HOH . G 6 HOH A 220 520 126 HOH HOH . G 6 HOH A 221 521 214 HOH HOH . G 6 HOH A 222 522 164 HOH HOH . G 6 HOH A 223 523 170 HOH HOH . G 6 HOH A 224 524 245 HOH HOH . G 6 HOH A 225 525 178 HOH HOH . G 6 HOH A 226 526 169 HOH HOH . G 6 HOH A 227 527 221 HOH HOH . G 6 HOH A 228 528 117 HOH HOH . G 6 HOH A 229 529 160 HOH HOH . G 6 HOH A 230 530 285 HOH HOH . G 6 HOH A 231 531 195 HOH HOH . G 6 HOH A 232 532 177 HOH HOH . G 6 HOH A 233 533 266 HOH HOH . G 6 HOH A 234 534 271 HOH HOH . G 6 HOH A 235 535 211 HOH HOH . G 6 HOH A 236 536 241 HOH HOH . G 6 HOH A 237 537 251 HOH HOH . G 6 HOH A 238 538 162 HOH HOH . G 6 HOH A 239 539 166 HOH HOH . G 6 HOH A 240 540 161 HOH HOH . G 6 HOH A 241 541 165 HOH HOH . G 6 HOH A 242 542 172 HOH HOH . G 6 HOH A 243 543 198 HOH HOH . G 6 HOH A 244 544 194 HOH HOH . G 6 HOH A 245 545 171 HOH HOH . G 6 HOH A 246 546 267 HOH HOH . G 6 HOH A 247 547 199 HOH HOH . G 6 HOH A 248 548 274 HOH HOH . G 6 HOH A 249 549 193 HOH HOH . G 6 HOH A 250 550 225 HOH HOH . G 6 HOH A 251 551 200 HOH HOH . G 6 HOH A 252 552 284 HOH HOH . G 6 HOH A 253 553 210 HOH HOH . G 6 HOH A 254 554 174 HOH HOH . G 6 HOH A 255 555 217 HOH HOH . G 6 HOH A 256 556 179 HOH HOH . G 6 HOH A 257 557 242 HOH HOH . G 6 HOH A 258 558 185 HOH HOH . G 6 HOH A 259 559 240 HOH HOH . G 6 HOH A 260 560 222 HOH HOH . G 6 HOH A 261 561 286 HOH HOH . G 6 HOH A 262 562 189 HOH HOH . G 6 HOH A 263 563 281 HOH HOH . G 6 HOH A 264 564 190 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 4 26.751 12.177 4.425 1 28.48 ? C1 EDO 203 A 1 HETATM 2 O O1 EDO . . . D 4 26.972 10.872 4.918 1 24.83 ? O1 EDO 203 A 1 HETATM 3 C C2 EDO . . . D 4 27.917 13.072 4.75 1 31.84 ? C2 EDO 203 A 1 HETATM 4 O O2 EDO . . . D 4 29.025 12.673 3.973 1 33.56 ? O2 EDO 203 A 1 HETATM 5 H H11 EDO . . . D 4 25.933 12.521 4.84 1 34.26 ? H11 EDO 203 A 1 HETATM 6 H H12 EDO . . . D 4 26.629 12.116 3.456 1 34.26 ? H12 EDO 203 A 1 HETATM 7 H HO1 EDO . . . D 4 27.664 10.574 4.525 1 29.87 ? HO1 EDO 203 A 1 HETATM 8 H H21 EDO . . . D 4 28.163 12.997 5.694 1 38.29 ? H21 EDO 203 A 1 HETATM 9 H H22 EDO . . . D 4 27.713 14.005 4.535 1 38.29 ? H22 EDO 203 A 1 HETATM 10 H HO2 EDO . . . D 4 29.448 12.093 4.428 1 40.36 ? HO2 EDO 203 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 253 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 10 #