data_8B01 # _model_server_result.job_id 1gVZ95C-p88MWg22s2Z6SA _model_server_result.datetime_utc '2025-06-20 04:11:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8b01 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":508}' # _entry.id 8B01 # _exptl.entry_id 8B01 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 184.361 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description TRIDECANE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8B01 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8B01 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 9 _struct_asym.id O _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 C SG CYS 412 C CYS 22 1_555 C SG CYS 485 C CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc1 B O SER 103 B SER 103 1_555 H NA NA . B NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? metalc ? metalc2 B O SER 106 B SER 106 1_555 H NA NA . B NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.536 ? metalc ? metalc3 B O GLY 145 B GLY 145 1_555 H NA NA . B NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc4 B O VAL 148 B VAL 148 1_555 H NA NA . B NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? metalc ? metalc5 B O PRO 150 B PRO 150 1_555 H NA NA . B NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.703 ? metalc ? metalc6 B O GLY 325 B GLY 325 1_555 I NA NA . B NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.969 ? metalc ? metalc7 B O GLY 366 B GLY 366 1_555 I NA NA . B NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? metalc ? metalc8 B O THR 369 B THR 369 1_555 I NA NA . B NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.526 ? metalc ? metalc9 B OG1 THR 369 B THR 369 1_555 I NA NA . B NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.674 ? metalc ? metalc10 B O MET 372 B MET 372 1_555 I NA NA . B NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? # _chem_comp.formula 'C13 H28' _chem_comp.formula_weight 184.361 _chem_comp.id TRD _chem_comp.mon_nstd_flag . _chem_comp.name TRIDECANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'LIPID FRAGMENT' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 TRD sing 508 n n C1 H11 TRD sing 509 n n C1 H12 TRD sing 510 n n C1 H13 TRD sing 511 n n C2 C3 TRD sing 512 n n C2 H21 TRD sing 513 n n C2 H22 TRD sing 514 n n C3 C4 TRD sing 515 n n C3 H31 TRD sing 516 n n C3 H32 TRD sing 517 n n C4 C5 TRD sing 518 n n C4 H41 TRD sing 519 n n C4 H42 TRD sing 520 n n C5 C6 TRD sing 521 n n C5 H51 TRD sing 522 n n C5 H52 TRD sing 523 n n C6 C7 TRD sing 524 n n C6 H61 TRD sing 525 n n C6 H62 TRD sing 526 n n C7 C8 TRD sing 527 n n C7 H71 TRD sing 528 n n C7 H72 TRD sing 529 n n C8 C9 TRD sing 530 n n C8 H81 TRD sing 531 n n C8 H82 TRD sing 532 n n C9 C10 TRD sing 533 n n C9 H91 TRD sing 534 n n C9 H92 TRD sing 535 n n C10 C11 TRD sing 536 n n C10 H101 TRD sing 537 n n C10 H102 TRD sing 538 n n C11 C12 TRD sing 539 n n C11 H111 TRD sing 540 n n C11 H112 TRD sing 541 n n C12 C13 TRD sing 542 n n C12 H121 TRD sing 543 n n C12 H122 TRD sing 544 n n C13 H131 TRD sing 545 n n C13 H132 TRD sing 546 n n C13 H133 TRD sing 547 n n # _atom_sites.entry_id 8B01 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 OCT A 1 201 2 OCT OCT . E 5 PTY A 1 202 7 PTY PTY . F 6 TWT A 1 203 8 TWT TWT . G 7 D10 A 1 204 9 D10 D10 . H 8 NA B 1 501 1 NA NA . I 8 NA B 1 502 2 NA NA . J 4 OCT B 1 503 1 OCT OCT . K 4 OCT B 1 504 3 OCT OCT . L 4 OCT B 1 505 4 OCT OCT . M 4 OCT B 1 506 5 OCT OCT . N 4 OCT B 1 507 6 OCT OCT . O 9 TRD B 1 508 10 TRD TRD . P 7 D10 B 1 509 11 D10 D10 . Q 5 PTY B 1 510 12 PTY PTY . R 10 HEX B 1 511 13 HEX HEX . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 TRD . . . O 9 139.102 136.601 174.816 0.5 122.61 ? C1 TRD 508 B 1 HETATM 2 C C2 TRD . . . O 9 138.913 137.748 173.833 0.5 126.1 ? C2 TRD 508 B 1 HETATM 3 C C3 TRD . . . O 9 138.453 137.278 172.459 0.5 128.95 ? C3 TRD 508 B 1 HETATM 4 C C4 TRD . . . O 9 138.529 138.363 171.392 0.5 128.36 ? C4 TRD 508 B 1 HETATM 5 C C5 TRD . . . O 9 138.067 137.894 170.018 0.5 128.78 ? C5 TRD 508 B 1 HETATM 6 C C6 TRD . . . O 9 139.054 138.225 168.905 0.5 130.04 ? C6 TRD 508 B 1 HETATM 7 C C7 TRD . . . O 9 138.454 138.13 167.507 0.5 129.77 ? C7 TRD 508 B 1 HETATM 8 C C8 TRD . . . O 9 137.8 136.787 167.205 0.5 126.71 ? C8 TRD 508 B 1 HETATM 9 C C9 TRD . . . O 9 137.515 136.583 165.721 0.5 123.7 ? C9 TRD 508 B 1 HETATM 10 C C10 TRD . . . O 9 136.825 137.775 165.07 0.5 124.88 ? C10 TRD 508 B 1 HETATM 11 C C11 TRD . . . O 9 136.676 137.637 163.56 0.5 127.87 ? C11 TRD 508 B 1 HETATM 12 C C12 TRD . . . O 9 135.795 136.467 163.14 0.5 129.17 ? C12 TRD 508 B 1 HETATM 13 C C13 TRD . . . O 9 135.409 136.523 161.668 0.5 125.69 ? C13 TRD 508 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 13 #