data_8B01 # _model_server_result.job_id u8ug4J_MjLAtNT5O76kYGw _model_server_result.datetime_utc '2024-11-18 12:34:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8b01 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":509}' # _entry.id 8B01 # _exptl.entry_id 8B01 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 142.282 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DECANE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8B01 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8B01 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 G N N ? 7 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 C SG CYS 412 C CYS 22 1_555 C SG CYS 485 C CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc1 B O SER 103 B SER 103 1_555 H NA NA . B NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? metalc ? metalc2 B O SER 106 B SER 106 1_555 H NA NA . B NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.536 ? metalc ? metalc3 B O GLY 145 B GLY 145 1_555 H NA NA . B NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc4 B O VAL 148 B VAL 148 1_555 H NA NA . B NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? metalc ? metalc5 B O PRO 150 B PRO 150 1_555 H NA NA . B NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.703 ? metalc ? metalc6 B O GLY 325 B GLY 325 1_555 I NA NA . B NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.969 ? metalc ? metalc7 B O GLY 366 B GLY 366 1_555 I NA NA . B NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? metalc ? metalc8 B O THR 369 B THR 369 1_555 I NA NA . B NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.526 ? metalc ? metalc9 B OG1 THR 369 B THR 369 1_555 I NA NA . B NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.674 ? metalc ? metalc10 B O MET 372 B MET 372 1_555 I NA NA . B NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? # _chem_comp.formula 'C10 H22' _chem_comp.formula_weight 142.282 _chem_comp.id D10 _chem_comp.mon_nstd_flag . _chem_comp.name DECANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8B01 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 OCT A 1 201 2 OCT OCT . E 5 PTY A 1 202 7 PTY PTY . F 6 TWT A 1 203 8 TWT TWT . G 7 D10 A 1 204 9 D10 D10 . H 8 NA B 1 501 1 NA NA . I 8 NA B 1 502 2 NA NA . J 4 OCT B 1 503 1 OCT OCT . K 4 OCT B 1 504 3 OCT OCT . L 4 OCT B 1 505 4 OCT OCT . M 4 OCT B 1 506 5 OCT OCT . N 4 OCT B 1 507 6 OCT OCT . O 9 TRD B 1 508 10 TRD TRD . P 7 D10 B 1 509 11 D10 D10 . Q 5 PTY B 1 510 12 PTY PTY . R 10 HEX B 1 511 13 HEX HEX . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 D10 . . . P 7 136.121 115.13 164.264 0.5 103.78 ? C1 D10 509 B 1 HETATM 2 C C2 D10 . . . P 7 135.817 115.523 162.825 0.5 112.51 ? C2 D10 509 B 1 HETATM 3 C C3 D10 . . . P 7 134.679 116.53 162.717 0.5 116.25 ? C3 D10 509 B 1 HETATM 4 C C4 D10 . . . P 7 134.517 117.11 161.318 0.5 112.85 ? C4 D10 509 B 1 HETATM 5 C C5 D10 . . . P 7 133.509 118.251 161.248 0.5 109.84 ? C5 D10 509 B 1 HETATM 6 C C6 D10 . . . P 7 132.069 117.802 161.456 0.5 109.93 ? C6 D10 509 B 1 HETATM 7 C C7 D10 . . . P 7 131.052 118.907 161.204 0.5 106.8 ? C7 D10 509 B 1 HETATM 8 C C8 D10 . . . P 7 131.3 119.661 159.906 0.5 108.98 ? C8 D10 509 B 1 HETATM 9 C C9 D10 . . . P 7 130.085 120.436 159.411 0.5 113.11 ? C9 D10 509 B 1 HETATM 10 C C10 D10 . . . P 7 129.513 121.379 160.461 0.5 108.65 ? C10 D10 509 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 364 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 10 #