data_8B01 # _model_server_result.job_id ue9jd9JgOaq57FD-Mmz4HQ _model_server_result.datetime_utc '2024-11-18 12:20:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8b01 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":510}' # _entry.id 8B01 # _exptl.entry_id 8B01 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 734.039 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PHOSPHATIDYLETHANOLAMINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8B01 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8B01 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 C SG CYS 412 C CYS 22 1_555 C SG CYS 485 C CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc1 B O SER 103 B SER 103 1_555 H NA NA . B NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? metalc ? metalc2 B O SER 106 B SER 106 1_555 H NA NA . B NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.536 ? metalc ? metalc3 B O GLY 145 B GLY 145 1_555 H NA NA . B NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc4 B O VAL 148 B VAL 148 1_555 H NA NA . B NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? metalc ? metalc5 B O PRO 150 B PRO 150 1_555 H NA NA . B NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.703 ? metalc ? metalc6 B O GLY 325 B GLY 325 1_555 I NA NA . B NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.969 ? metalc ? metalc7 B O GLY 366 B GLY 366 1_555 I NA NA . B NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? metalc ? metalc8 B O THR 369 B THR 369 1_555 I NA NA . B NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.526 ? metalc ? metalc9 B OG1 THR 369 B THR 369 1_555 I NA NA . B NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.674 ? metalc ? metalc10 B O MET 372 B MET 372 1_555 I NA NA . B NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? # _chem_comp.formula 'C40 H80 N O8 P' _chem_comp.formula_weight 734.039 _chem_comp.id PTY _chem_comp.mon_nstd_flag . _chem_comp.name PHOSPHATIDYLETHANOLAMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8B01 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 OCT A 1 201 2 OCT OCT . E 5 PTY A 1 202 7 PTY PTY . F 6 TWT A 1 203 8 TWT TWT . G 7 D10 A 1 204 9 D10 D10 . H 8 NA B 1 501 1 NA NA . I 8 NA B 1 502 2 NA NA . J 4 OCT B 1 503 1 OCT OCT . K 4 OCT B 1 504 3 OCT OCT . L 4 OCT B 1 505 4 OCT OCT . M 4 OCT B 1 506 5 OCT OCT . N 4 OCT B 1 507 6 OCT OCT . O 9 TRD B 1 508 10 TRD TRD . P 7 D10 B 1 509 11 D10 D10 . Q 5 PTY B 1 510 12 PTY PTY . R 10 HEX B 1 511 13 HEX HEX . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PTY . . . Q 5 149.815 155.117 134.847 0.5 149.04 ? C1 PTY 510 B 1 HETATM 2 C C2 PTY . . . Q 5 155.939 155.758 132.785 0.5 150.4 ? C2 PTY 510 B 1 HETATM 3 C C3 PTY . . . Q 5 155.214 154.489 133.17 0.5 150.56 ? C3 PTY 510 B 1 HETATM 4 O O4 PTY . . . Q 5 149.396 153.965 135.576 0.5 147.19 ? O4 PTY 510 B 1 HETATM 5 C C5 PTY . . . Q 5 151.664 155.471 136.477 0.5 148.15 ? C5 PTY 510 B 1 HETATM 6 C C6 PTY . . . Q 5 150.43 156.076 135.839 0.5 151.96 ? C6 PTY 510 B 1 HETATM 7 O O7 PTY . . . Q 5 149.423 156.368 136.815 0.5 155.17 ? O7 PTY 510 B 1 HETATM 8 C C8 PTY . . . Q 5 148.861 157.576 136.851 0.5 151.44 ? C8 PTY 510 B 1 HETATM 9 O O10 PTY . . . Q 5 149.402 158.55 137.31 0.5 148.8 ? O10 PTY 510 B 1 HETATM 10 C C11 PTY . . . Q 5 147.479 157.557 136.259 0.5 149.09 ? C11 PTY 510 B 1 HETATM 11 C C12 PTY . . . Q 5 146.704 156.288 136.569 0.5 147.77 ? C12 PTY 510 B 1 HETATM 12 C C13 PTY . . . Q 5 145.223 156.418 136.237 0.5 148.25 ? C13 PTY 510 B 1 HETATM 13 C C14 PTY . . . Q 5 144.492 155.085 136.319 0.5 149.12 ? C14 PTY 510 B 1 HETATM 14 C C15 PTY . . . Q 5 143.005 155.219 136.613 0.5 148.39 ? C15 PTY 510 B 1 HETATM 15 C C16 PTY . . . Q 5 142.746 155.838 137.979 0.5 147.81 ? C16 PTY 510 B 1 HETATM 16 C C17 PTY . . . Q 5 141.303 156.26 138.21 0.5 147.99 ? C17 PTY 510 B 1 HETATM 17 C C18 PTY . . . Q 5 140.325 155.103 138.067 0.5 144.42 ? C18 PTY 510 B 1 HETATM 18 C C19 PTY . . . Q 5 138.868 155.515 138.216 0.5 146.4 ? C19 PTY 510 B 1 HETATM 19 C C30 PTY . . . Q 5 149.706 152.772 135.077 0.5 144.92 ? C30 PTY 510 B 1 HETATM 20 C C31 PTY . . . Q 5 148.534 151.833 135.103 0.5 145.18 ? C31 PTY 510 B 1 HETATM 21 O O30 PTY . . . Q 5 150.802 152.502 134.663 0.5 146.67 ? O30 PTY 510 B 1 HETATM 22 C C32 PTY . . . Q 5 147.751 151.795 133.802 0.5 146.75 ? C32 PTY 510 B 1 HETATM 23 C C33 PTY . . . Q 5 147.047 153.114 133.513 0.5 149.23 ? C33 PTY 510 B 1 HETATM 24 C C34 PTY . . . Q 5 146.083 153.024 132.338 0.5 148.36 ? C34 PTY 510 B 1 HETATM 25 C C35 PTY . . . Q 5 144.714 152.473 132.709 0.5 147.67 ? C35 PTY 510 B 1 HETATM 26 C C36 PTY . . . Q 5 143.611 152.981 131.79 0.5 147.54 ? C36 PTY 510 B 1 HETATM 27 C C37 PTY . . . Q 5 142.233 152.432 132.127 0.5 146.35 ? C37 PTY 510 B 1 HETATM 28 C C38 PTY . . . Q 5 141.14 152.97 131.213 0.5 145.41 ? C38 PTY 510 B 1 HETATM 29 C C39 PTY . . . Q 5 140.739 154.406 131.519 0.5 148.62 ? C39 PTY 510 B 1 HETATM 30 C C40 PTY . . . Q 5 139.756 154.518 132.678 0.5 147.6 ? C40 PTY 510 B 1 HETATM 31 C C41 PTY . . . Q 5 139.17 155.914 132.839 0.5 145.75 ? C41 PTY 510 B 1 HETATM 32 P P1 PTY . . . Q 5 153.977 154.783 135.462 0.5 166.77 ? P1 PTY 510 B 1 HETATM 33 O O11 PTY . . . Q 5 154.006 154.839 133.827 0.5 157.13 ? O11 PTY 510 B 1 HETATM 34 O O12 PTY . . . Q 5 154.571 153.496 135.942 0.5 152 ? O12 PTY 510 B 1 HETATM 35 O O13 PTY . . . Q 5 154.438 156.079 136.054 0.5 153.57 ? O13 PTY 510 B 1 HETATM 36 O O14 PTY . . . Q 5 152.335 154.7 135.508 0.5 152.04 ? O14 PTY 510 B 1 HETATM 37 N N1 PTY . . . Q 5 156.458 156.444 133.957 0.5 148.66 ? N1 PTY 510 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 37 #