data_8B04 # _model_server_result.job_id dEvHjzYRgnVaf2H1Zzeecg _model_server_result.datetime_utc '2025-01-04 08:03:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8b04 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 8B04 # _exptl.entry_id 8B04 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 195.215 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-cyclopropylcarbonyl-3-propan-2-yl-1,2-oxazol-5-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8B04 _cell.length_a 51.22 _cell.length_b 58.64 _cell.length_c 74.91 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8B04 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 56 A CYS 42 1_555 A SG CYS 72 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? disulf ? disulf2 A SG CYS 153 A CYS 136 1_555 A SG CYS 220 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? disulf ? disulf3 A SG CYS 184 A CYS 168 1_555 A SG CYS 200 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf4 A SG CYS 210 A CYS 191 1_555 A SG CYS 240 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? covale ? covale1 A OG SER 214 A SER 195 1_555 D C04 OU0 . A OU0 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.351 ? metalc ? metalc1 A OE1 GLU 85 A GLU 70 1_555 E CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc2 A OE2 GLU 85 A GLU 70 1_555 E CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.175 ? metalc ? metalc3 A O ASN 87 A ASN 72 1_555 E CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc4 A O GLN 90 A GLN 75 1_555 E CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? metalc ? metalc5 A OD2 ASP 92 A ASP 77 1_555 E CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.816 ? metalc ? metalc6 A OE2 GLU 95 A GLU 80 1_555 E CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.414 ? metalc ? metalc7 E CA CA . A CA 304 1_555 F O HOH . A HOH 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.469 ? # _chem_comp.formula 'C10 H13 N O3' _chem_comp.formula_weight 195.215 _chem_comp.id OU0 _chem_comp.mon_nstd_flag . _chem_comp.name 2-cyclopropylcarbonyl-3-propan-2-yl-1,2-oxazol-5-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O05 C04 OU0 doub 246 n n C02 C01 OU0 sing 247 n n C02 C03 OU0 sing 248 n n C04 C03 OU0 sing 249 n n C01 C03 OU0 sing 250 n n C01 H1 OU0 sing 251 n n C01 H2 OU0 sing 252 n n C02 H3 OU0 sing 253 n n C02 H4 OU0 sing 254 n n C03 H5 OU0 sing 255 n n C04 N1 OU0 sing 256 n n N1 O1 OU0 sing 257 n n O1 C2 OU0 sing 258 n n C2 C3 OU0 sing 259 n n C3 C4 OU0 doub 260 n n C4 N1 OU0 sing 261 n n C2 O2 OU0 doub 262 n n C4 C1 OU0 sing 263 n n C3 H6 OU0 sing 264 n n C1 C5 OU0 sing 265 n n C1 C6 OU0 sing 266 n n C1 H7 OU0 sing 267 n n C5 H8 OU0 sing 268 n n C5 H9 OU0 sing 269 n n C5 H10 OU0 sing 270 n n C6 H11 OU0 sing 271 n n C6 H12 OU0 sing 272 n n C6 H13 OU0 sing 273 n n # _atom_sites.entry_id 8B04 _atom_sites.fract_transf_matrix[1][1] 0.019524 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017053 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013349 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DMS A 1 301 246 DMS DMS . C 2 DMS A 1 302 247 DMS DMS . D 3 OU0 A 1 303 248 OU0 OS1 . E 4 CA A 1 304 1 CA CA . F 5 HOH A 1 401 53 HOH HOH . F 5 HOH A 2 402 96 HOH HOH . F 5 HOH A 3 403 92 HOH HOH . F 5 HOH A 4 404 17 HOH HOH . F 5 HOH A 5 405 72 HOH HOH . F 5 HOH A 6 406 112 HOH HOH . F 5 HOH A 7 407 77 HOH HOH . F 5 HOH A 8 408 43 HOH HOH . F 5 HOH A 9 409 37 HOH HOH . F 5 HOH A 10 410 60 HOH HOH . F 5 HOH A 11 411 33 HOH HOH . F 5 HOH A 12 412 39 HOH HOH . F 5 HOH A 13 413 12 HOH HOH . F 5 HOH A 14 414 54 HOH HOH . F 5 HOH A 15 415 15 HOH HOH . F 5 HOH A 16 416 66 HOH HOH . F 5 HOH A 17 417 63 HOH HOH . F 5 HOH A 18 418 61 HOH HOH . F 5 HOH A 19 419 108 HOH HOH . F 5 HOH A 20 420 22 HOH HOH . F 5 HOH A 21 421 102 HOH HOH . F 5 HOH A 22 422 82 HOH HOH . F 5 HOH A 23 423 32 HOH HOH . F 5 HOH A 24 424 70 HOH HOH . F 5 HOH A 25 425 55 HOH HOH . F 5 HOH A 26 426 44 HOH HOH . F 5 HOH A 27 427 7 HOH HOH . F 5 HOH A 28 428 4 HOH HOH . F 5 HOH A 29 429 73 HOH HOH . F 5 HOH A 30 430 68 HOH HOH . F 5 HOH A 31 431 67 HOH HOH . F 5 HOH A 32 432 23 HOH HOH . F 5 HOH A 33 433 38 HOH HOH . F 5 HOH A 34 434 80 HOH HOH . F 5 HOH A 35 435 50 HOH HOH . F 5 HOH A 36 436 6 HOH HOH . F 5 HOH A 37 437 118 HOH HOH . F 5 HOH A 38 438 71 HOH HOH . F 5 HOH A 39 439 94 HOH HOH . F 5 HOH A 40 440 51 HOH HOH . F 5 HOH A 41 441 10 HOH HOH . F 5 HOH A 42 442 87 HOH HOH . F 5 HOH A 43 443 20 HOH HOH . F 5 HOH A 44 444 52 HOH HOH . F 5 HOH A 45 445 28 HOH HOH . F 5 HOH A 46 446 46 HOH HOH . F 5 HOH A 47 447 36 HOH HOH . F 5 HOH A 48 448 119 HOH HOH . F 5 HOH A 49 449 79 HOH HOH . F 5 HOH A 50 450 8 HOH HOH . F 5 HOH A 51 451 40 HOH HOH . F 5 HOH A 52 452 69 HOH HOH . F 5 HOH A 53 453 5 HOH HOH . F 5 HOH A 54 454 111 HOH HOH . F 5 HOH A 55 455 3 HOH HOH . F 5 HOH A 56 456 49 HOH HOH . F 5 HOH A 57 457 101 HOH HOH . F 5 HOH A 58 458 86 HOH HOH . F 5 HOH A 59 459 11 HOH HOH . F 5 HOH A 60 460 78 HOH HOH . F 5 HOH A 61 461 1 HOH HOH . F 5 HOH A 62 462 126 HOH HOH . F 5 HOH A 63 463 16 HOH HOH . F 5 HOH A 64 464 30 HOH HOH . F 5 HOH A 65 465 45 HOH HOH . F 5 HOH A 66 466 57 HOH HOH . F 5 HOH A 67 467 62 HOH HOH . F 5 HOH A 68 468 59 HOH HOH . F 5 HOH A 69 469 19 HOH HOH . F 5 HOH A 70 470 90 HOH HOH . F 5 HOH A 71 471 95 HOH HOH . F 5 HOH A 72 472 115 HOH HOH . F 5 HOH A 73 473 65 HOH HOH . F 5 HOH A 74 474 75 HOH HOH . F 5 HOH A 75 475 24 HOH HOH . F 5 HOH A 76 476 27 HOH HOH . F 5 HOH A 77 477 100 HOH HOH . F 5 HOH A 78 478 113 HOH HOH . F 5 HOH A 79 479 83 HOH HOH . F 5 HOH A 80 480 48 HOH HOH . F 5 HOH A 81 481 74 HOH HOH . F 5 HOH A 82 482 26 HOH HOH . F 5 HOH A 83 483 2 HOH HOH . F 5 HOH A 84 484 64 HOH HOH . F 5 HOH A 85 485 41 HOH HOH . F 5 HOH A 86 486 84 HOH HOH . F 5 HOH A 87 487 93 HOH HOH . F 5 HOH A 88 488 117 HOH HOH . F 5 HOH A 89 489 88 HOH HOH . F 5 HOH A 90 490 56 HOH HOH . F 5 HOH A 91 491 42 HOH HOH . F 5 HOH A 92 492 13 HOH HOH . F 5 HOH A 93 493 106 HOH HOH . F 5 HOH A 94 494 98 HOH HOH . F 5 HOH A 95 495 25 HOH HOH . F 5 HOH A 96 496 21 HOH HOH . F 5 HOH A 97 497 9 HOH HOH . F 5 HOH A 98 498 29 HOH HOH . F 5 HOH A 99 499 76 HOH HOH . F 5 HOH A 100 500 58 HOH HOH . F 5 HOH A 101 501 99 HOH HOH . F 5 HOH A 102 502 114 HOH HOH . F 5 HOH A 103 503 18 HOH HOH . F 5 HOH A 104 504 103 HOH HOH . F 5 HOH A 105 505 109 HOH HOH . F 5 HOH A 106 506 31 HOH HOH . F 5 HOH A 107 507 14 HOH HOH . F 5 HOH A 108 508 116 HOH HOH . F 5 HOH A 109 509 123 HOH HOH . F 5 HOH A 110 510 104 HOH HOH . F 5 HOH A 111 511 85 HOH HOH . F 5 HOH A 112 512 97 HOH HOH . F 5 HOH A 113 513 120 HOH HOH . F 5 HOH A 114 514 81 HOH HOH . F 5 HOH A 115 515 91 HOH HOH . F 5 HOH A 116 516 122 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 OU0 . . . D 3 11.886 3.747 1.689 1 27.2 ? C01 OU0 303 A 1 HETATM 2 C C02 OU0 . . . D 3 12.187 4.831 0.629 1 24.78 ? C02 OU0 303 A 1 HETATM 3 C C03 OU0 . . . D 3 11.173 5.083 1.707 1 24.77 ? C03 OU0 303 A 1 HETATM 4 C C04 OU0 . . . D 3 9.779 4.751 1.213 1 21.91 ? C04 OU0 303 A 1 HETATM 5 O O05 OU0 . . . D 3 9.434 4.071 0.247 1 21.79 ? O05 OU0 303 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 5 #