data_8B06 # _model_server_result.job_id H4GI31D-c7q3ewk5Bz3i3A _model_server_result.datetime_utc '2024-11-24 05:04:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8b06 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":503}' # _entry.id 8B06 # _exptl.entry_id 8B06 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 105.093 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description SERINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.68 _cell.angle_gamma 90 _cell.entry_id 8B06 _cell.length_a 181.789 _cell.length_b 59.048 _cell.length_c 67.092 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8B06 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B NZ LYS 87 B LYS 87 1_555 C C4A PLP . B PLP 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? metalc ? metalc1 B O GLY 232 B GLY 232 1_555 D CS CS . B CS 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.99 ? metalc ? metalc2 B O GLY 268 B GLY 268 1_555 D CS CS . B CS 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.986 ? metalc ? metalc3 B O PHE 306 B PHE 306 1_555 D CS CS . B CS 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.935 ? metalc ? metalc4 B O SER 308 B SER 308 1_555 D CS CS . B CS 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.401 ? metalc ? metalc5 D CS CS . B CS 502 1_555 I O HOH . B HOH 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.976 ? # _chem_comp.formula 'C3 H7 N O3' _chem_comp.formula_weight 105.093 _chem_comp.id SER _chem_comp.mon_nstd_flag y _chem_comp.name SERINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SER sing 303 n n N H SER sing 304 n n N H2 SER sing 305 n n CA C SER sing 306 n n CA CB SER sing 307 n n CA HA SER sing 308 n n C O SER doub 309 n n C OXT SER sing 310 n n CB OG SER sing 311 n n CB HB2 SER sing 312 n n CB HB3 SER sing 313 n n OG HG SER sing 314 n n OXT HXT SER sing 315 n n # _atom_sites.entry_id 8B06 _atom_sites.fract_transf_matrix[1][1] 0.005501 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000451 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016935 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014955 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 PLP B 1 501 501 PLP PLP . D 4 CS B 1 502 601 CS CS . E 5 SER B 1 503 701 SER SER . F 6 CL B 1 504 1 CL CL . G 6 CL B 1 505 2 CL CL . H 7 HOH A 1 301 25 HOH HOH . H 7 HOH A 2 302 27 HOH HOH . H 7 HOH A 3 303 24 HOH HOH . H 7 HOH A 4 304 31 HOH HOH . H 7 HOH A 5 305 21 HOH HOH . H 7 HOH A 6 306 29 HOH HOH . H 7 HOH A 7 307 47 HOH HOH . H 7 HOH A 8 308 28 HOH HOH . H 7 HOH A 9 309 26 HOH HOH . H 7 HOH A 10 310 32 HOH HOH . H 7 HOH A 11 311 20 HOH HOH . I 7 HOH B 1 601 50 HOH HOH . I 7 HOH B 2 602 39 HOH HOH . I 7 HOH B 3 603 49 HOH HOH . I 7 HOH B 4 604 15 HOH HOH . I 7 HOH B 5 605 16 HOH HOH . I 7 HOH B 6 606 11 HOH HOH . I 7 HOH B 7 607 19 HOH HOH . I 7 HOH B 8 608 41 HOH HOH . I 7 HOH B 9 609 8 HOH HOH . I 7 HOH B 10 610 23 HOH HOH . I 7 HOH B 11 611 10 HOH HOH . I 7 HOH B 12 612 18 HOH HOH . I 7 HOH B 13 613 1 HOH HOH . I 7 HOH B 14 614 55 HOH HOH . I 7 HOH B 15 615 5 HOH HOH . I 7 HOH B 16 616 17 HOH HOH . I 7 HOH B 17 617 4 HOH HOH . I 7 HOH B 18 618 30 HOH HOH . I 7 HOH B 19 619 56 HOH HOH . I 7 HOH B 20 620 9 HOH HOH . I 7 HOH B 21 621 13 HOH HOH . I 7 HOH B 22 622 46 HOH HOH . I 7 HOH B 23 623 40 HOH HOH . I 7 HOH B 24 624 33 HOH HOH . I 7 HOH B 25 625 7 HOH HOH . I 7 HOH B 26 626 37 HOH HOH . I 7 HOH B 27 627 53 HOH HOH . I 7 HOH B 28 628 35 HOH HOH . I 7 HOH B 29 629 6 HOH HOH . I 7 HOH B 30 630 22 HOH HOH . I 7 HOH B 31 631 34 HOH HOH . I 7 HOH B 32 632 42 HOH HOH . I 7 HOH B 33 633 3 HOH HOH . I 7 HOH B 34 634 52 HOH HOH . I 7 HOH B 35 635 44 HOH HOH . I 7 HOH B 36 636 36 HOH HOH . I 7 HOH B 37 637 2 HOH HOH . I 7 HOH B 38 638 38 HOH HOH . I 7 HOH B 39 639 43 HOH HOH . I 7 HOH B 40 640 57 HOH HOH . I 7 HOH B 41 641 51 HOH HOH . I 7 HOH B 42 642 54 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SER . . . E 5 79.792 18.381 9.097 1 49.85 ? N SER 503 B 1 HETATM 2 C CA SER . . . E 5 78.372 18.061 9.211 1 49.71 ? CA SER 503 B 1 HETATM 3 C C SER . . . E 5 77.492 18.897 8.297 1 50.09 ? C SER 503 B 1 HETATM 4 O O SER . . . E 5 77.933 19.531 7.339 1 50.47 ? O SER 503 B 1 HETATM 5 C CB SER . . . E 5 77.898 18.216 10.662 1 59.56 ? CB SER 503 B 1 HETATM 6 O OG SER . . . E 5 77.948 16.981 11.353 1 59.17 ? OG SER 503 B 1 HETATM 7 O OXT SER . . . E 5 76.284 18.931 8.497 1 50.08 ? OXT SER 503 B 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 343 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 7 #