data_8B0C # _model_server_result.job_id uLiY-Ki_CynHjcEu8BYXMw _model_server_result.datetime_utc '2025-01-10 15:13:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8b0c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":602}' # _entry.id 8B0C # _exptl.entry_id 8B0C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.45 _cell.angle_gamma 90 _cell.entry_id 8B0C _cell.length_a 45.976 _cell.length_b 71.441 _cell.length_c 78.261 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8B0C _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 279 AAA CYS 437 1_555 A SG CYS 384 AAA CYS 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? covale ? covale1 A ND2 ASN 42 AAA ASN 200 1_555 C C1 NAG . AAA NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale2 A ND2 ASN 80 AAA ASN 238 1_555 D C1 NAG . AAA NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale3 A OE2 GLU 185 AAA GLU 343 1_555 F C1 OV3 . AAA OV3 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale4 A ND2 ASN 301 AAA ASN 459 1_555 E C1 NAG . AAA NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 8B0C _atom_sites.fract_transf_matrix[1][1] 0.02175 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002075 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013998 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012836 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG AAA 1 601 601 NAG NAG . D 3 NAG AAA 1 602 602 NAG NAG . E 3 NAG AAA 1 603 603 NAG NAG . F 4 OV3 AAA 1 604 604 OV3 VBB . G 5 HOH AAA 1 701 28 HOH HOH . G 5 HOH AAA 2 702 109 HOH HOH . G 5 HOH AAA 3 703 113 HOH HOH . G 5 HOH AAA 4 704 54 HOH HOH . G 5 HOH AAA 5 705 42 HOH HOH . G 5 HOH AAA 6 706 69 HOH HOH . G 5 HOH AAA 7 707 148 HOH HOH . G 5 HOH AAA 8 708 147 HOH HOH . G 5 HOH AAA 9 709 33 HOH HOH . G 5 HOH AAA 10 710 142 HOH HOH . G 5 HOH AAA 11 711 58 HOH HOH . G 5 HOH AAA 12 712 24 HOH HOH . G 5 HOH AAA 13 713 50 HOH HOH . G 5 HOH AAA 14 714 13 HOH HOH . G 5 HOH AAA 15 715 125 HOH HOH . G 5 HOH AAA 16 716 70 HOH HOH . G 5 HOH AAA 17 717 143 HOH HOH . G 5 HOH AAA 18 718 15 HOH HOH . G 5 HOH AAA 19 719 22 HOH HOH . G 5 HOH AAA 20 720 31 HOH HOH . G 5 HOH AAA 21 721 120 HOH HOH . G 5 HOH AAA 22 722 21 HOH HOH . G 5 HOH AAA 23 723 112 HOH HOH . G 5 HOH AAA 24 724 135 HOH HOH . G 5 HOH AAA 25 725 153 HOH HOH . G 5 HOH AAA 26 726 127 HOH HOH . G 5 HOH AAA 27 727 46 HOH HOH . G 5 HOH AAA 28 728 72 HOH HOH . G 5 HOH AAA 29 729 115 HOH HOH . G 5 HOH AAA 30 730 144 HOH HOH . G 5 HOH AAA 31 731 138 HOH HOH . G 5 HOH AAA 32 732 10 HOH HOH . G 5 HOH AAA 33 733 111 HOH HOH . G 5 HOH AAA 34 734 39 HOH HOH . G 5 HOH AAA 35 735 25 HOH HOH . G 5 HOH AAA 36 736 122 HOH HOH . G 5 HOH AAA 37 737 136 HOH HOH . G 5 HOH AAA 38 738 117 HOH HOH . G 5 HOH AAA 39 739 150 HOH HOH . G 5 HOH AAA 40 740 121 HOH HOH . G 5 HOH AAA 41 741 128 HOH HOH . G 5 HOH AAA 42 742 9 HOH HOH . G 5 HOH AAA 43 743 11 HOH HOH . G 5 HOH AAA 44 744 149 HOH HOH . G 5 HOH AAA 45 745 2 HOH HOH . G 5 HOH AAA 46 746 130 HOH HOH . G 5 HOH AAA 47 747 6 HOH HOH . G 5 HOH AAA 48 748 133 HOH HOH . G 5 HOH AAA 49 749 101 HOH HOH . G 5 HOH AAA 50 750 41 HOH HOH . G 5 HOH AAA 51 751 3 HOH HOH . G 5 HOH AAA 52 752 114 HOH HOH . G 5 HOH AAA 53 753 152 HOH HOH . G 5 HOH AAA 54 754 52 HOH HOH . G 5 HOH AAA 55 755 154 HOH HOH . G 5 HOH AAA 56 756 84 HOH HOH . H 5 HOH BBB 1 201 155 HOH HOH . H 5 HOH BBB 2 202 12 HOH HOH . H 5 HOH BBB 3 203 141 HOH HOH . H 5 HOH BBB 4 204 137 HOH HOH . H 5 HOH BBB 5 205 60 HOH HOH . H 5 HOH BBB 6 206 146 HOH HOH . H 5 HOH BBB 7 207 124 HOH HOH . H 5 HOH BBB 8 208 119 HOH HOH . H 5 HOH BBB 9 209 132 HOH HOH . H 5 HOH BBB 10 210 123 HOH HOH . H 5 HOH BBB 11 211 118 HOH HOH . H 5 HOH BBB 12 212 129 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . D 3 -24.469 -4.508 9.068 1 76.41 ? C1 NAG 602 AAA 1 HETATM 2 C C2 NAG . . . D 3 -25.415 -5.713 9.01 1 83.59 ? C2 NAG 602 AAA 1 HETATM 3 C C3 NAG . . . D 3 -25.791 -6.266 7.61 1 91.75 ? C3 NAG 602 AAA 1 HETATM 4 C C4 NAG . . . D 3 -25.729 -5.212 6.476 1 93.13 ? C4 NAG 602 AAA 1 HETATM 5 C C5 NAG . . . D 3 -24.481 -4.338 6.699 1 89 ? C5 NAG 602 AAA 1 HETATM 6 C C6 NAG . . . D 3 -24.224 -3.283 5.635 1 80.31 ? C6 NAG 602 AAA 1 HETATM 7 C C7 NAG . . . D 3 -25.074 -7.199 10.892 1 82.17 ? C7 NAG 602 AAA 1 HETATM 8 C C8 NAG . . . D 3 -24.215 -8.314 11.476 1 67.5 ? C8 NAG 602 AAA 1 HETATM 9 N N2 NAG . . . D 3 -24.703 -6.768 9.7 1 84.52 ? N2 NAG 602 AAA 1 HETATM 10 O O3 NAG . . . D 3 -27.086 -6.902 7.692 1 91.28 ? O3 NAG 602 AAA 1 HETATM 11 O O4 NAG . . . D 3 -25.715 -5.823 5.159 1 93.72 ? O4 NAG 602 AAA 1 HETATM 12 O O5 NAG . . . D 3 -24.635 -3.655 7.942 1 80.36 ? O5 NAG 602 AAA 1 HETATM 13 O O6 NAG . . . D 3 -25.256 -2.316 5.749 1 81.36 ? O6 NAG 602 AAA 1 HETATM 14 O O7 NAG . . . D 3 -26.057 -6.689 11.431 1 78.14 ? O7 NAG 602 AAA 1 HETATM 15 H H1 NAG . . . D 3 -23.449 -4.915 9.043 1 78.87 ? H1 NAG 602 AAA 1 HETATM 16 H H2 NAG . . . D 3 -26.343 -5.455 9.539 1 83.82 ? H2 NAG 602 AAA 1 HETATM 17 H H3 NAG . . . D 3 -25.055 -7.04 7.351 1 90.27 ? H3 NAG 602 AAA 1 HETATM 18 H H4 NAG . . . D 3 -26.614 -4.567 6.564 1 92.18 ? H4 NAG 602 AAA 1 HETATM 19 H H5 NAG . . . D 3 -23.602 -4.998 6.741 1 86.3 ? H5 NAG 602 AAA 1 HETATM 20 H H61 NAG . . . D 3 -24.219 -3.727 4.637 1 82.52 ? H61 NAG 602 AAA 1 HETATM 21 H H62 NAG . . . D 3 -23.263 -2.805 5.815 1 82.4 ? H62 NAG 602 AAA 1 HETATM 22 H H81 NAG . . . D 3 -23.223 -7.967 11.601 1 71.72 ? H81 NAG 602 AAA 1 HETATM 23 H H82 NAG . . . D 3 -24.608 -8.608 12.414 1 71.72 ? H82 NAG 602 AAA 1 HETATM 24 H H83 NAG . . . D 3 -24.218 -9.143 10.817 1 71.72 ? H83 NAG 602 AAA 1 HETATM 25 H HN2 NAG . . . D 3 -23.898 -7.18 9.249 1 83.5 ? HN2 NAG 602 AAA 1 HETATM 26 H HO3 NAG . . . D 3 -27.239 -7.373 6.845 0 92.19 ? HO3 NAG 602 AAA 1 HETATM 27 H HO4 NAG . . . D 3 -25.718 -5.119 4.456 0 92.73 ? HO4 NAG 602 AAA 1 HETATM 28 H HO6 NAG . . . D 3 -25.099 -1.607 5.043 0 82.29 ? HO6 NAG 602 AAA 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 28 #