data_8B0P # _model_server_result.job_id CnrvwBda3ISeTr5VZxQttw _model_server_result.datetime_utc '2024-11-08 13:32:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8b0p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1}' # _entry.id 8B0P # _exptl.entry_id 8B0P _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 909.478 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(2~{S})-3-[(2~{S})-3-azanyl-2-(hexadecanoylamino)-3-oxidanylidene-propyl]sulfanyl-2-hexadecanoyloxy-propyl] hexadecanoate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8B0P _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8B0P _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id C _struct_conn.ptnr1_label_atom_id C60 _struct_conn.ptnr1_label_comp_id IG7 _struct_conn.ptnr1_label_seq_id . _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id IG7 _struct_conn.ptnr1_auth_seq_id 1 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id N _struct_conn.ptnr2_label_comp_id SER _struct_conn.ptnr2_label_seq_id 1 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id SER _struct_conn.ptnr2_auth_seq_id 2 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.337 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C54 H104 N2 O6 S' _chem_comp.formula_weight 909.478 _chem_comp.id IG7 _chem_comp.mon_nstd_flag . _chem_comp.name '[(2~{S})-3-[(2~{S})-3-azanyl-2-(hexadecanoylamino)-3-oxidanylidene-propyl]sulfanyl-2-hexadecanoyloxy-propyl] hexadecanoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N61 C60 IG7 sing 150 n n O62 C60 IG7 doub 151 n n C60 C38 IG7 sing 152 n n O18 C02 IG7 doub 153 n n C02 C03 IG7 sing 154 n n C02 N01 IG7 sing 155 n n C03 C04 IG7 sing 156 n n C38 N01 IG7 sing 157 n n C38 C39 IG7 sing 158 n n C39 S40 IG7 sing 159 n n C04 C05 IG7 sing 160 n n S40 C41 IG7 sing 161 n n C45 C46 IG7 sing 162 n n C45 C44 IG7 sing 163 n n C46 C47 IG7 sing 164 n n C05 C06 IG7 sing 165 n n C41 C42 IG7 sing 166 n n O43 C44 IG7 sing 167 n n O43 C42 IG7 sing 168 n n C48 C47 IG7 sing 169 n n C48 C49 IG7 sing 170 n n C44 O63 IG7 doub 171 n n C42 C19 IG7 sing 172 n n C06 C07 IG7 sing 173 n n C49 C50 IG7 sing 174 n n C50 C51 IG7 sing 175 n n C19 O20 IG7 sing 176 n n O20 C21 IG7 sing 177 n n C07 C08 IG7 sing 178 n n C51 C52 IG7 sing 179 n n C21 C22 IG7 sing 180 n n C21 O36 IG7 doub 181 n n C22 C23 IG7 sing 182 n n C08 C09 IG7 sing 183 n n C52 C53 IG7 sing 184 n n C53 C54 IG7 sing 185 n n C09 C10 IG7 sing 186 n n C24 C23 IG7 sing 187 n n C24 C25 IG7 sing 188 n n C10 C11 IG7 sing 189 n n C25 C26 IG7 sing 190 n n C54 C55 IG7 sing 191 n n C55 C56 IG7 sing 192 n n C58 C57 IG7 sing 193 n n C58 C59 IG7 sing 194 n n C11 C12 IG7 sing 195 n n C26 C27 IG7 sing 196 n n C56 C57 IG7 sing 197 n n C27 C28 IG7 sing 198 n n C12 C13 IG7 sing 199 n n C28 C29 IG7 sing 200 n n C29 C30 IG7 sing 201 n n C13 C14 IG7 sing 202 n n C30 C31 IG7 sing 203 n n C31 C32 IG7 sing 204 n n C14 C15 IG7 sing 205 n n C32 C33 IG7 sing 206 n n C33 C34 IG7 sing 207 n n C37 C35 IG7 sing 208 n n C15 C16 IG7 sing 209 n n C17 C16 IG7 sing 210 n n C34 C35 IG7 sing 211 n n N01 H1 IG7 sing 212 n n C03 H2 IG7 sing 213 n n C03 H3 IG7 sing 214 n n C04 H4 IG7 sing 215 n n C04 H5 IG7 sing 216 n n C05 H6 IG7 sing 217 n n C05 H7 IG7 sing 218 n n C06 H8 IG7 sing 219 n n C06 H9 IG7 sing 220 n n C07 H10 IG7 sing 221 n n C07 H11 IG7 sing 222 n n C08 H12 IG7 sing 223 n n C08 H13 IG7 sing 224 n n C09 H14 IG7 sing 225 n n C09 H15 IG7 sing 226 n n C10 H16 IG7 sing 227 n n C10 H17 IG7 sing 228 n n C11 H18 IG7 sing 229 n n C11 H19 IG7 sing 230 n n C12 H20 IG7 sing 231 n n C12 H21 IG7 sing 232 n n C13 H22 IG7 sing 233 n n C13 H23 IG7 sing 234 n n C14 H24 IG7 sing 235 n n C14 H25 IG7 sing 236 n n C15 H26 IG7 sing 237 n n C15 H27 IG7 sing 238 n n C16 H28 IG7 sing 239 n n C16 H29 IG7 sing 240 n n C17 H30 IG7 sing 241 n n C17 H31 IG7 sing 242 n n C17 H32 IG7 sing 243 n n C19 H33 IG7 sing 244 n n C19 H34 IG7 sing 245 n n C22 H35 IG7 sing 246 n n C22 H36 IG7 sing 247 n n C23 H37 IG7 sing 248 n n C23 H38 IG7 sing 249 n n C24 H39 IG7 sing 250 n n C24 H40 IG7 sing 251 n n C25 H41 IG7 sing 252 n n C25 H42 IG7 sing 253 n n C26 H43 IG7 sing 254 n n C26 H44 IG7 sing 255 n n C27 H45 IG7 sing 256 n n C27 H46 IG7 sing 257 n n C28 H47 IG7 sing 258 n n C28 H48 IG7 sing 259 n n C29 H49 IG7 sing 260 n n C29 H50 IG7 sing 261 n n C30 H51 IG7 sing 262 n n C30 H52 IG7 sing 263 n n C31 H53 IG7 sing 264 n n C31 H54 IG7 sing 265 n n C32 H55 IG7 sing 266 n n C32 H56 IG7 sing 267 n n C33 H57 IG7 sing 268 n n C33 H58 IG7 sing 269 n n C34 H59 IG7 sing 270 n n C34 H60 IG7 sing 271 n n C35 H61 IG7 sing 272 n n C35 H62 IG7 sing 273 n n C37 H63 IG7 sing 274 n n C37 H64 IG7 sing 275 n n C37 H65 IG7 sing 276 n n C38 H66 IG7 sing 277 n n C39 H67 IG7 sing 278 n n C39 H68 IG7 sing 279 n n C41 H69 IG7 sing 280 n n C41 H70 IG7 sing 281 n n C42 H71 IG7 sing 282 n n C45 H72 IG7 sing 283 n n C45 H73 IG7 sing 284 n n C46 H74 IG7 sing 285 n n C46 H75 IG7 sing 286 n n C47 H76 IG7 sing 287 n n C47 H77 IG7 sing 288 n n C48 H78 IG7 sing 289 n n C48 H79 IG7 sing 290 n n C49 H80 IG7 sing 291 n n C49 H81 IG7 sing 292 n n C50 H82 IG7 sing 293 n n C50 H83 IG7 sing 294 n n C51 H84 IG7 sing 295 n n C51 H85 IG7 sing 296 n n C52 H86 IG7 sing 297 n n C52 H87 IG7 sing 298 n n C53 H88 IG7 sing 299 n n C53 H89 IG7 sing 300 n n C54 H90 IG7 sing 301 n n C54 H91 IG7 sing 302 n n C55 H92 IG7 sing 303 n n C55 H93 IG7 sing 304 n n C56 H94 IG7 sing 305 n n C56 H95 IG7 sing 306 n n C57 H96 IG7 sing 307 n n C57 H97 IG7 sing 308 n n C58 H98 IG7 sing 309 n n C58 H99 IG7 sing 310 n n C59 H100 IG7 sing 311 n n C59 H101 IG7 sing 312 n n C59 H102 IG7 sing 313 n n N61 H103 IG7 sing 314 n n N61 H104 IG7 sing 315 n n # _atom_sites.entry_id 8B0P _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id C _pdbx_nonpoly_scheme.entity_id 3 _pdbx_nonpoly_scheme.mon_id IG7 _pdbx_nonpoly_scheme.pdb_strand_id B _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 1 _pdbx_nonpoly_scheme.auth_seq_num 601 _pdbx_nonpoly_scheme.pdb_mon_id IG7 _pdbx_nonpoly_scheme.auth_mon_id Z3C _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N01 IG7 . . . C 3 100.065 95.163 78.217 1 82.67 ? N01 IG7 1 B 1 HETATM 2 C C02 IG7 . . . C 3 101.089 94.49 78.744 1 82.67 ? C02 IG7 1 B 1 HETATM 3 C C03 IG7 . . . C 3 101.316 94.705 80.225 1 82.67 ? C03 IG7 1 B 1 HETATM 4 C C04 IG7 . . . C 3 101.513 96.151 80.547 1 82.67 ? C04 IG7 1 B 1 HETATM 5 C C05 IG7 . . . C 3 101.607 96.453 82.035 1 82.67 ? C05 IG7 1 B 1 HETATM 6 C C06 IG7 . . . C 3 101.76 97.923 82.331 1 82.67 ? C06 IG7 1 B 1 HETATM 7 C C07 IG7 . . . C 3 100.618 98.771 81.826 1 82.67 ? C07 IG7 1 B 1 HETATM 8 C C08 IG7 . . . C 3 100.92 100.247 81.781 1 82.67 ? C08 IG7 1 B 1 HETATM 9 C C09 IG7 . . . C 3 99.74 101.116 81.428 1 82.67 ? C09 IG7 1 B 1 HETATM 10 C C10 IG7 . . . C 3 98.651 101.12 82.468 1 82.67 ? C10 IG7 1 B 1 HETATM 11 C C11 IG7 . . . C 3 97.53 102.088 82.192 1 82.67 ? C11 IG7 1 B 1 HETATM 12 C C12 IG7 . . . C 3 96.528 102.195 83.313 1 82.67 ? C12 IG7 1 B 1 HETATM 13 C C13 IG7 . . . C 3 95.41 103.172 83.06 1 82.67 ? C13 IG7 1 B 1 HETATM 14 C C14 IG7 . . . C 3 94.439 103.297 84.206 1 82.67 ? C14 IG7 1 B 1 HETATM 15 C C15 IG7 . . . C 3 93.277 104.218 83.94 1 82.67 ? C15 IG7 1 B 1 HETATM 16 C C16 IG7 . . . C 3 92.33 104.34 85.104 1 82.67 ? C16 IG7 1 B 1 HETATM 17 C C17 IG7 . . . C 3 91.763 103.018 85.559 1 82.67 ? C17 IG7 1 B 1 HETATM 18 O O18 IG7 . . . C 3 101.81 93.755 78.074 1 82.67 ? O18 IG7 1 B 1 HETATM 19 C C19 IG7 . . . C 3 100.102 100.281 74.394 1 82.67 ? C19 IG7 1 B 1 HETATM 20 O O20 IG7 . . . C 3 100.529 101.571 73.905 1 82.67 ? O20 IG7 1 B 1 HETATM 21 C C21 IG7 . . . C 3 99.916 102.023 72.818 1 82.67 ? C21 IG7 1 B 1 HETATM 22 C C22 IG7 . . . C 3 100.217 103.477 72.587 1 82.67 ? C22 IG7 1 B 1 HETATM 23 C C23 IG7 . . . C 3 99.037 104.359 72.838 1 82.67 ? C23 IG7 1 B 1 HETATM 24 C C24 IG7 . . . C 3 98.487 104.179 74.241 1 82.67 ? C24 IG7 1 B 1 HETATM 25 C C25 IG7 . . . C 3 97.053 104.605 74.409 1 82.67 ? C25 IG7 1 B 1 HETATM 26 C C26 IG7 . . . C 3 96.825 106.089 74.53 1 82.67 ? C26 IG7 1 B 1 HETATM 27 C C27 IG7 . . . C 3 95.363 106.457 74.57 1 82.67 ? C27 IG7 1 B 1 HETATM 28 C C28 IG7 . . . C 3 95.057 107.798 75.185 1 82.67 ? C28 IG7 1 B 1 HETATM 29 C C29 IG7 . . . C 3 93.586 108.129 75.201 1 82.67 ? C29 IG7 1 B 1 HETATM 30 C C30 IG7 . . . C 3 93.209 109.275 76.104 1 82.67 ? C30 IG7 1 B 1 HETATM 31 C C31 IG7 . . . C 3 93.563 109.056 77.553 1 82.67 ? C31 IG7 1 B 1 HETATM 32 C C32 IG7 . . . C 3 92.915 110.03 78.503 1 82.67 ? C32 IG7 1 B 1 HETATM 33 C C33 IG7 . . . C 3 91.41 109.932 78.549 1 82.67 ? C33 IG7 1 B 1 HETATM 34 C C34 IG7 . . . C 3 90.754 110.87 79.533 1 82.67 ? C34 IG7 1 B 1 HETATM 35 C C35 IG7 . . . C 3 90.955 112.332 79.233 1 82.67 ? C35 IG7 1 B 1 HETATM 36 O O36 IG7 . . . C 3 99.192 101.344 72.139 1 82.67 ? O36 IG7 1 B 1 HETATM 37 C C37 IG7 . . . C 3 90.387 112.759 77.901 1 82.67 ? C37 IG7 1 B 1 HETATM 38 C C38 IG7 . . . C 3 99.959 95.483 76.805 1 82.67 ? C38 IG7 1 B 1 HETATM 39 C C39 IG7 . . . C 3 98.809 96.449 76.55 1 82.67 ? C39 IG7 1 B 1 HETATM 40 S S40 IG7 . . . C 3 99.247 97.762 75.38 1 82.67 ? S40 IG7 1 B 1 HETATM 41 C C41 IG7 . . . C 3 100.458 98.701 76.341 1 82.67 ? C41 IG7 1 B 1 HETATM 42 C C42 IG7 . . . C 3 100.872 99.982 75.655 1 82.67 ? C42 IG7 1 B 1 HETATM 43 O O43 IG7 . . . C 3 100.794 101.126 76.556 1 82.67 ? O43 IG7 1 B 1 HETATM 44 C C44 IG7 . . . C 3 99.603 101.513 77.05 1 82.67 ? C44 IG7 1 B 1 HETATM 45 C C45 IG7 . . . C 3 99.663 102.902 77.618 1 82.67 ? C45 IG7 1 B 1 HETATM 46 C C46 IG7 . . . C 3 98.41 103.307 78.329 1 82.67 ? C46 IG7 1 B 1 HETATM 47 C C47 IG7 . . . C 3 98.348 104.801 78.591 1 82.67 ? C47 IG7 1 B 1 HETATM 48 C C48 IG7 . . . C 3 97.202 105.231 79.472 1 82.67 ? C48 IG7 1 B 1 HETATM 49 C C49 IG7 . . . C 3 97.004 106.724 79.537 1 82.67 ? C49 IG7 1 B 1 HETATM 50 C C50 IG7 . . . C 3 96.072 107.182 80.631 1 82.67 ? C50 IG7 1 B 1 HETATM 51 C C51 IG7 . . . C 3 95.802 108.666 80.626 1 82.67 ? C51 IG7 1 B 1 HETATM 52 C C52 IG7 . . . C 3 95.282 109.205 81.935 1 82.67 ? C52 IG7 1 B 1 HETATM 53 C C53 IG7 . . . C 3 93.973 108.612 82.392 1 82.67 ? C53 IG7 1 B 1 HETATM 54 C C54 IG7 . . . C 3 93.599 108.997 83.801 1 82.67 ? C54 IG7 1 B 1 HETATM 55 C C55 IG7 . . . C 3 92.257 108.488 84.261 1 82.67 ? C55 IG7 1 B 1 HETATM 56 C C56 IG7 . . . C 3 91.078 109.129 83.574 1 82.67 ? C56 IG7 1 B 1 HETATM 57 C C57 IG7 . . . C 3 89.742 108.75 84.163 1 82.67 ? C57 IG7 1 B 1 HETATM 58 C C58 IG7 . . . C 3 88.562 109.449 83.54 1 82.67 ? C58 IG7 1 B 1 HETATM 59 C C59 IG7 . . . C 3 87.243 109.11 84.192 1 82.67 ? C59 IG7 1 B 1 HETATM 60 C C60 IG7 . . . C 3 99.78 94.269 75.899 1 82.67 ? C60 IG7 1 B 1 HETATM 61 O O62 IG7 . . . C 3 99.615 93.159 76.4 1 82.67 ? O62 IG7 1 B 1 HETATM 62 O O63 IG7 . . . C 3 98.593 100.859 77.015 1 82.67 ? O63 IG7 1 B 1 # _model_server_stats.io_time_ms 77 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 62 #