data_8B1B # _model_server_result.job_id LRBSq9J9RS1BvGxrPCYo1g _model_server_result.datetime_utc '2025-04-09 15:25:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8b1b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":809}' # _entry.id 8B1B # _exptl.entry_id 8B1B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 170.335 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DODECANE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8B1B _cell.length_a 54.591 _cell.length_b 125.836 _cell.length_c 169.031 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8B1B _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall 'P 2 2ab (z,x,y)' _symmetry.space_group_name_H-M 'P 2 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 8 _struct_asym.id L _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 21 _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 22 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 94 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 95 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.124 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C12 H26' _chem_comp.formula_weight 170.335 _chem_comp.id D12 _chem_comp.mon_nstd_flag . _chem_comp.name DODECANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 D12 sing 151 n n C1 H11 D12 sing 152 n n C1 H12 D12 sing 153 n n C1 H13 D12 sing 154 n n C2 C3 D12 sing 155 n n C2 H21 D12 sing 156 n n C2 H22 D12 sing 157 n n C3 C4 D12 sing 158 n n C3 H31 D12 sing 159 n n C3 H32 D12 sing 160 n n C4 C5 D12 sing 161 n n C4 H41 D12 sing 162 n n C4 H42 D12 sing 163 n n C5 C6 D12 sing 164 n n C5 H51 D12 sing 165 n n C5 H52 D12 sing 166 n n C6 C7 D12 sing 167 n n C6 H61 D12 sing 168 n n C6 H62 D12 sing 169 n n C7 C8 D12 sing 170 n n C7 H71 D12 sing 171 n n C7 H72 D12 sing 172 n n C8 C9 D12 sing 173 n n C8 H81 D12 sing 174 n n C8 H82 D12 sing 175 n n C9 C10 D12 sing 176 n n C9 H91 D12 sing 177 n n C9 H92 D12 sing 178 n n C10 C11 D12 sing 179 n n C10 H101 D12 sing 180 n n C10 H102 D12 sing 181 n n C11 C12 D12 sing 182 n n C11 H111 D12 sing 183 n n C11 H112 D12 sing 184 n n C12 H121 D12 sing 185 n n C12 H122 D12 sing 186 n n C12 H123 D12 sing 187 n n # _atom_sites.entry_id 8B1B _atom_sites.fract_transf_matrix[1][1] 0.018318 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007947 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005916 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 LMT A 1 801 801 LMT LMT . E 5 OCT A 1 802 1101 OCT OCT . F 6 PG4 A 1 803 1201 PG4 PG4 . G 7 1PE A 1 804 1301 1PE 1PE . H 6 PG4 A 1 805 1701 PG4 PG4 . I 6 PG4 A 1 806 1801 PG4 PG4 . J 6 PG4 A 1 807 1901 PG4 PG4 . K 6 PG4 A 1 808 2001 PG4 PG4 . L 8 D12 A 1 809 2101 D12 D12 . M 9 GOL A 1 810 2201 GOL GOL . N 7 1PE A 1 811 2301 1PE 1PE . O 10 D10 A 1 812 2401 D10 D10 . P 9 GOL A 1 813 2501 GOL GOL . Q 11 HEX A 1 814 1 HEX HEX . R 11 HEX A 1 815 2 HEX HEX . S 12 HOH A 1 901 13 HOH HOH . S 12 HOH A 2 902 2 HOH HOH . S 12 HOH A 3 903 3 HOH HOH . S 12 HOH A 4 904 1 HOH HOH . S 12 HOH A 5 905 9 HOH HOH . S 12 HOH A 6 906 12 HOH HOH . S 12 HOH A 7 907 6 HOH HOH . S 12 HOH A 8 908 11 HOH HOH . S 12 HOH A 9 909 10 HOH HOH . S 12 HOH A 10 910 5 HOH HOH . T 12 HOH B 1 201 4 HOH HOH . T 12 HOH B 2 202 7 HOH HOH . T 12 HOH B 3 203 8 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 D12 . . . L 8 -26.307 35.757 30.727 1 96.72 ? C1 D12 809 A 1 HETATM 2 C C2 D12 . . . L 8 -27.085 36.746 31.621 1 119.9 ? C2 D12 809 A 1 HETATM 3 C C3 D12 . . . L 8 -26.973 38.224 31.175 1 117.76 ? C3 D12 809 A 1 HETATM 4 C C4 D12 . . . L 8 -26.484 39.163 32.293 1 107.63 ? C4 D12 809 A 1 HETATM 5 C C5 D12 . . . L 8 -26.695 40.621 31.874 1 106.46 ? C5 D12 809 A 1 HETATM 6 C C6 D12 . . . L 8 -26.133 41.583 32.93 1 108.53 ? C6 D12 809 A 1 HETATM 7 C C7 D12 . . . L 8 -26.099 43.012 32.37 1 104.91 ? C7 D12 809 A 1 HETATM 8 C C8 D12 . . . L 8 -25.511 43.996 33.387 1 111.9 ? C8 D12 809 A 1 HETATM 9 C C9 D12 . . . L 8 -25.443 45.415 32.804 1 117.12 ? C9 D12 809 A 1 HETATM 10 C C10 D12 . . . L 8 -25.253 46.442 33.931 1 123.6 ? C10 D12 809 A 1 HETATM 11 C C11 D12 . . . L 8 -25.012 47.846 33.369 1 114.56 ? C11 D12 809 A 1 HETATM 12 C C12 D12 . . . L 8 -23.718 48.42 33.944 1 99.29 ? C12 D12 809 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 334 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 12 #