data_8B1D # _model_server_result.job_id 9tglh-4qyfbxLlI9Hp16HA _model_server_result.datetime_utc '2025-04-28 07:15:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8b1d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":801}' # _entry.id 8B1D # _exptl.entry_id 8B1D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 510.615 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DODECYL-BETA-D-MALTOSIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8B1D _cell.length_a 54.759 _cell.length_b 125.156 _cell.length_c 169.9 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8B1D _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall 'P 2 2ab (z,x,y)' _symmetry.space_group_name_H-M 'P 2 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 21 _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 22 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 94 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 95 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.05 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C24 H46 O11' _chem_comp.formula_weight 510.615 _chem_comp.id LMT _chem_comp.mon_nstd_flag . _chem_comp.name DODECYL-BETA-D-MALTOSIDE _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1B C2B LMT sing 331 n n C1B O1B LMT sing 332 n n C1B O5B LMT sing 333 n n C1B H1B LMT sing 334 n n C2B C3B LMT sing 335 n n C2B O2B LMT sing 336 n n C2B H2B LMT sing 337 n n C3B C4B LMT sing 338 n n C3B O3B LMT sing 339 n n C3B H3B LMT sing 340 n n C4B C5B LMT sing 341 n n C4B O4' LMT sing 342 n n C4B H4B LMT sing 343 n n C5B C6B LMT sing 344 n n C5B O5B LMT sing 345 n n C5B H5B LMT sing 346 n n C6B O6B LMT sing 347 n n C6B "H6'2" LMT sing 348 n n C6B "H6'1" LMT sing 349 n n O1B C4' LMT sing 350 n n O2B H2O1 LMT sing 351 n n O3B H3O1 LMT sing 352 n n O4' H4O1 LMT sing 353 n n O6B H6B LMT sing 354 n n C1' C2' LMT sing 355 n n C1' O1' LMT sing 356 n n C1' O5' LMT sing 357 n n C1' H1' LMT sing 358 n n C2' C3' LMT sing 359 n n C2' O2' LMT sing 360 n n C2' H2' LMT sing 361 n n C3' C4' LMT sing 362 n n C3' O3' LMT sing 363 n n C3' H3' LMT sing 364 n n C4' C5' LMT sing 365 n n C4' H4' LMT sing 366 n n C5' C6' LMT sing 367 n n C5' O5' LMT sing 368 n n C5' H5' LMT sing 369 n n C6' O6' LMT sing 370 n n C6' H6D LMT sing 371 n n C6' H6E LMT sing 372 n n O1' C1 LMT sing 373 n n O2' H2O2 LMT sing 374 n n O3' H3O2 LMT sing 375 n n O6' H6' LMT sing 376 n n C1 C2 LMT sing 377 n n C1 H12 LMT sing 378 n n C1 H11 LMT sing 379 n n C2 C3 LMT sing 380 n n C2 H22 LMT sing 381 n n C2 H21 LMT sing 382 n n C3 C4 LMT sing 383 n n C3 H32 LMT sing 384 n n C3 H31 LMT sing 385 n n C4 C5 LMT sing 386 n n C4 H42 LMT sing 387 n n C4 H41 LMT sing 388 n n C5 C6 LMT sing 389 n n C5 H52 LMT sing 390 n n C5 H51 LMT sing 391 n n C6 C7 LMT sing 392 n n C6 H62 LMT sing 393 n n C6 H61 LMT sing 394 n n C7 C8 LMT sing 395 n n C7 H72 LMT sing 396 n n C7 H71 LMT sing 397 n n C8 C9 LMT sing 398 n n C8 H82 LMT sing 399 n n C8 H81 LMT sing 400 n n C9 C10 LMT sing 401 n n C9 H92 LMT sing 402 n n C9 H91 LMT sing 403 n n C10 C11 LMT sing 404 n n C10 H102 LMT sing 405 n n C10 H101 LMT sing 406 n n C11 C12 LMT sing 407 n n C11 H112 LMT sing 408 n n C11 H111 LMT sing 409 n n C12 H123 LMT sing 410 n n C12 H122 LMT sing 411 n n C12 H121 LMT sing 412 n n # _atom_sites.entry_id 8B1D _atom_sites.fract_transf_matrix[1][1] 0.018262 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00799 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005886 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 LMT A 1 801 801 LMT LMT . E 5 OCT A 1 802 1101 OCT OCT . F 6 PG4 A 1 803 1201 PG4 PG4 . G 7 1PE A 1 804 1301 1PE 1PE . H 6 PG4 A 1 805 1701 PG4 PG4 . I 6 PG4 A 1 806 1801 PG4 PG4 . J 6 PG4 A 1 807 1901 PG4 PG4 . K 6 PG4 A 1 808 2001 PG4 PG4 . L 8 D12 A 1 809 2101 D12 D12 . M 9 GOL A 1 810 2201 GOL GOL . N 7 1PE A 1 811 2301 1PE 1PE . O 10 D10 A 1 812 2401 D10 D10 . P 9 GOL A 1 813 2501 GOL GOL . Q 11 HEX A 1 814 1 HEX HEX . R 11 HEX A 1 815 2 HEX HEX . S 12 HOH A 1 901 95 HOH HOH . S 12 HOH A 2 902 82 HOH HOH . S 12 HOH A 3 903 116 HOH HOH . S 12 HOH A 4 904 42 HOH HOH . S 12 HOH A 5 905 14 HOH HOH . S 12 HOH A 6 906 11 HOH HOH . S 12 HOH A 7 907 106 HOH HOH . S 12 HOH A 8 908 110 HOH HOH . S 12 HOH A 9 909 72 HOH HOH . S 12 HOH A 10 910 131 HOH HOH . S 12 HOH A 11 911 35 HOH HOH . S 12 HOH A 12 912 108 HOH HOH . S 12 HOH A 13 913 2 HOH HOH . S 12 HOH A 14 914 104 HOH HOH . S 12 HOH A 15 915 49 HOH HOH . S 12 HOH A 16 916 124 HOH HOH . S 12 HOH A 17 917 90 HOH HOH . S 12 HOH A 18 918 71 HOH HOH . S 12 HOH A 19 919 7 HOH HOH . S 12 HOH A 20 920 26 HOH HOH . S 12 HOH A 21 921 30 HOH HOH . S 12 HOH A 22 922 31 HOH HOH . S 12 HOH A 23 923 10 HOH HOH . S 12 HOH A 24 924 18 HOH HOH . S 12 HOH A 25 925 47 HOH HOH . S 12 HOH A 26 926 60 HOH HOH . S 12 HOH A 27 927 38 HOH HOH . S 12 HOH A 28 928 16 HOH HOH . S 12 HOH A 29 929 130 HOH HOH . S 12 HOH A 30 930 83 HOH HOH . S 12 HOH A 31 931 111 HOH HOH . S 12 HOH A 32 932 56 HOH HOH . S 12 HOH A 33 933 21 HOH HOH . S 12 HOH A 34 934 17 HOH HOH . S 12 HOH A 35 935 12 HOH HOH . S 12 HOH A 36 936 75 HOH HOH . S 12 HOH A 37 937 32 HOH HOH . S 12 HOH A 38 938 117 HOH HOH . S 12 HOH A 39 939 73 HOH HOH . S 12 HOH A 40 940 37 HOH HOH . S 12 HOH A 41 941 40 HOH HOH . S 12 HOH A 42 942 45 HOH HOH . S 12 HOH A 43 943 84 HOH HOH . S 12 HOH A 44 944 64 HOH HOH . S 12 HOH A 45 945 24 HOH HOH . S 12 HOH A 46 946 120 HOH HOH . S 12 HOH A 47 947 25 HOH HOH . S 12 HOH A 48 948 74 HOH HOH . S 12 HOH A 49 949 67 HOH HOH . S 12 HOH A 50 950 23 HOH HOH . S 12 HOH A 51 951 41 HOH HOH . S 12 HOH A 52 952 13 HOH HOH . S 12 HOH A 53 953 79 HOH HOH . S 12 HOH A 54 954 88 HOH HOH . S 12 HOH A 55 955 15 HOH HOH . S 12 HOH A 56 956 134 HOH HOH . S 12 HOH A 57 957 53 HOH HOH . S 12 HOH A 58 958 118 HOH HOH . S 12 HOH A 59 959 80 HOH HOH . S 12 HOH A 60 960 105 HOH HOH . S 12 HOH A 61 961 81 HOH HOH . S 12 HOH A 62 962 119 HOH HOH . S 12 HOH A 63 963 78 HOH HOH . S 12 HOH A 64 964 126 HOH HOH . S 12 HOH A 65 965 121 HOH HOH . S 12 HOH A 66 966 122 HOH HOH . S 12 HOH A 67 967 66 HOH HOH . S 12 HOH A 68 968 99 HOH HOH . S 12 HOH A 69 969 123 HOH HOH . S 12 HOH A 70 970 100 HOH HOH . S 12 HOH A 71 971 127 HOH HOH . T 12 HOH B 1 201 107 HOH HOH . T 12 HOH B 2 202 33 HOH HOH . T 12 HOH B 3 203 46 HOH HOH . T 12 HOH B 4 204 70 HOH HOH . T 12 HOH B 5 205 61 HOH HOH . T 12 HOH B 6 206 19 HOH HOH . T 12 HOH B 7 207 133 HOH HOH . T 12 HOH B 8 208 44 HOH HOH . T 12 HOH B 9 209 3 HOH HOH . T 12 HOH B 10 210 22 HOH HOH . T 12 HOH B 11 211 5 HOH HOH . T 12 HOH B 12 212 1 HOH HOH . T 12 HOH B 13 213 8 HOH HOH . T 12 HOH B 14 214 59 HOH HOH . T 12 HOH B 15 215 9 HOH HOH . T 12 HOH B 16 216 39 HOH HOH . T 12 HOH B 17 217 92 HOH HOH . T 12 HOH B 18 218 63 HOH HOH . T 12 HOH B 19 219 89 HOH HOH . T 12 HOH B 20 220 6 HOH HOH . T 12 HOH B 21 221 36 HOH HOH . T 12 HOH B 22 222 28 HOH HOH . T 12 HOH B 23 223 20 HOH HOH . T 12 HOH B 24 224 58 HOH HOH . T 12 HOH B 25 225 55 HOH HOH . T 12 HOH B 26 226 54 HOH HOH . T 12 HOH B 27 227 62 HOH HOH . T 12 HOH B 28 228 27 HOH HOH . T 12 HOH B 29 229 52 HOH HOH . T 12 HOH B 30 230 97 HOH HOH . T 12 HOH B 31 231 69 HOH HOH . T 12 HOH B 32 232 4 HOH HOH . T 12 HOH B 33 233 43 HOH HOH . T 12 HOH B 34 234 94 HOH HOH . T 12 HOH B 35 235 101 HOH HOH . T 12 HOH B 36 236 87 HOH HOH . T 12 HOH B 37 237 114 HOH HOH . T 12 HOH B 38 238 109 HOH HOH . T 12 HOH B 39 239 29 HOH HOH . T 12 HOH B 40 240 103 HOH HOH . T 12 HOH B 41 241 98 HOH HOH . T 12 HOH B 42 242 115 HOH HOH . T 12 HOH B 43 243 86 HOH HOH . T 12 HOH B 44 244 50 HOH HOH . T 12 HOH B 45 245 112 HOH HOH . T 12 HOH B 46 246 51 HOH HOH . T 12 HOH B 47 247 91 HOH HOH . T 12 HOH B 48 248 96 HOH HOH . T 12 HOH B 49 249 48 HOH HOH . T 12 HOH B 50 250 68 HOH HOH . T 12 HOH B 51 251 65 HOH HOH . T 12 HOH B 52 252 93 HOH HOH . T 12 HOH B 53 253 57 HOH HOH . T 12 HOH B 54 254 102 HOH HOH . U 12 HOH C 1 101 135 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1B LMT . . . D 4 -20.169 -35.269 59.433 1 89.37 ? C1B LMT 801 A 1 HETATM 2 C C2B LMT . . . D 4 -19.502 -36.628 59.755 1 86.71 ? C2B LMT 801 A 1 HETATM 3 C C3B LMT . . . D 4 -18.815 -37.117 58.466 1 83.93 ? C3B LMT 801 A 1 HETATM 4 C C4B LMT . . . D 4 -19.901 -37.401 57.4 1 75.71 ? C4B LMT 801 A 1 HETATM 5 C C5B LMT . . . D 4 -20.751 -36.113 57.232 1 75.05 ? C5B LMT 801 A 1 HETATM 6 C C6B LMT . . . D 4 -21.968 -36.429 56.378 1 73.14 ? C6B LMT 801 A 1 HETATM 7 O O1B LMT . . . D 4 -19.145 -34.397 59.006 1 89.48 ? O1B LMT 801 A 1 HETATM 8 O O2B LMT . . . D 4 -18.578 -36.437 60.745 1 89.12 ? O2B LMT 801 A 1 HETATM 9 O O3B LMT . . . D 4 -17.91 -38.153 58.654 1 79.57 ? O3B LMT 801 A 1 HETATM 10 O O4' LMT . . . D 4 -19.277 -37.736 56.215 1 71.68 ? O4' LMT 801 A 1 HETATM 11 O O5B LMT . . . D 4 -21.154 -35.466 58.447 1 84.06 ? O5B LMT 801 A 1 HETATM 12 O O6B LMT . . . D 4 -23.014 -35.544 56.629 1 74.9 ? O6B LMT 801 A 1 HETATM 13 C C1' LMT . . . D 4 -21.442 -31.052 59.769 1 103.96 ? C1' LMT 801 A 1 HETATM 14 C C2' LMT . . . D 4 -21.598 -31.858 58.457 1 99.36 ? C2' LMT 801 A 1 HETATM 15 C C3' LMT . . . D 4 -20.26 -32.461 57.877 1 89.93 ? C3' LMT 801 A 1 HETATM 16 C C4' LMT . . . D 4 -19.247 -32.949 58.949 1 96.88 ? C4' LMT 801 A 1 HETATM 17 C C5' LMT . . . D 4 -19.556 -32.246 60.312 1 104.22 ? C5' LMT 801 A 1 HETATM 18 C C6' LMT . . . D 4 -18.366 -32.147 61.24 1 97.23 ? C6' LMT 801 A 1 HETATM 19 O O1' LMT . . . D 4 -22.002 -29.795 59.613 1 102.31 ? O1' LMT 801 A 1 HETATM 20 O O2' LMT . . . D 4 -22.472 -32.883 58.709 1 98.3 ? O2' LMT 801 A 1 HETATM 21 O O3' LMT . . . D 4 -19.616 -31.582 57.019 1 83.28 ? O3' LMT 801 A 1 HETATM 22 O O5' LMT . . . D 4 -20.055 -30.945 60.081 1 106.51 ? O5' LMT 801 A 1 HETATM 23 O O6' LMT . . . D 4 -17.807 -30.913 60.992 1 96.79 ? O6' LMT 801 A 1 HETATM 24 C C1 LMT . . . D 4 -21.105 -28.73 59.315 1 97.4 ? C1 LMT 801 A 1 HETATM 25 C C2 LMT . . . D 4 -21.951 -27.607 58.765 1 93.38 ? C2 LMT 801 A 1 HETATM 26 C C3 LMT . . . D 4 -22.48 -27.807 57.379 1 86.42 ? C3 LMT 801 A 1 HETATM 27 C C4 LMT . . . D 4 -21.355 -28.437 56.6 1 82.81 ? C4 LMT 801 A 1 HETATM 28 C C5 LMT . . . D 4 -20.329 -27.444 56.18 1 79.48 ? C5 LMT 801 A 1 HETATM 29 C C6 LMT . . . D 4 -20.23 -27.384 54.698 1 71.75 ? C6 LMT 801 A 1 HETATM 30 C C7 LMT . . . D 4 -19.271 -28.44 54.275 1 63.31 ? C7 LMT 801 A 1 HETATM 31 C C8 LMT . . . D 4 -18.247 -27.848 53.385 1 67.19 ? C8 LMT 801 A 1 HETATM 32 C C9 LMT . . . D 4 -18.016 -28.708 52.193 1 66.8 ? C9 LMT 801 A 1 HETATM 33 C C10 LMT . . . D 4 -16.545 -28.973 52.073 1 66.57 ? C10 LMT 801 A 1 HETATM 34 C C11 LMT . . . D 4 -16.14 -29.013 50.641 1 61.04 ? C11 LMT 801 A 1 HETATM 35 C C12 LMT . . . D 4 -14.807 -29.68 50.5 1 67.49 ? C12 LMT 801 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 35 #