data_8B20
#
_model_server_result.job_id            Q44mzWpJkAWD21Fr1OVlGA 
_model_server_result.datetime_utc      '2024-11-19 08:47:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8b20 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":305}' 
#
_entry.id    8B20 
#
_exptl.entry_id    8B20 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8B20 
_cell.length_a            77.068 
_cell.length_b            70.444 
_cell.length_c            73.803 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8B20 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,O 1 1 
B,I,J,K,L,M,N,P 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 M N N 
? 4 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 67 A ASP 95 1_555 F CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.7 ? 
metalc ? metalc2 A NE2 HIS 92 A HIS 120 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? 
metalc ? metalc3 A ND1 HIS 94 A HIS 122 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.781 ? 
metalc ? metalc4 A OD2 ASP 96 A ASP 124 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.955 ? 
metalc ? metalc5 A OD2 ASP 102 A ASP 130 1_555 F CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.716 ? 
metalc ? metalc6 A OE1 GLU 124 A GLU 152 1_555 E CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.638 ? 
metalc ? metalc7 A OE2 GLU 124 A GLU 152 1_555 E CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.799 ? 
metalc ? metalc8 A NE2 HIS 161 A HIS 189 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? 
metalc ? metalc9 A SG CYS 180 A CYS 208 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? 
metalc ? metalc10 A OD1 ASP 195 A ASP 223 1_555 E CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.01 ? 
metalc ? metalc11 A OD2 ASP 195 A ASP 223 1_555 E CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? 
metalc ? metalc12 A OE1 GLU 199 A GLU 227 1_555 K CA CA . B CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? 
metalc ? metalc13 A OE2 GLU 199 A GLU 227 1_555 K CA CA . B CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.71 ? 
metalc ? metalc14 A NE2 HIS 222 A HIS 250 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? 
metalc ? metalc15 C ZN ZN . A ZN 301 1_555 H N3 OQK . A OQK 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.96 ? 
metalc ? metalc16 D ZN ZN . A ZN 302 1_555 H S1 OQK . A OQK 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
metalc ? metalc17 E CA CA . A CA 303 1_555 B OE1 GLU 199 B GLU 227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? 
metalc ? metalc18 E CA CA . A CA 303 1_555 B OE2 GLU 199 B GLU 227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.763 ? 
metalc ? metalc19 F CA CA . A CA 304 1_555 O O HOH . A HOH 454 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.734 ? 
metalc ? metalc20 B NE2 HIS 92 B HIS 120 1_555 I ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.981 ? 
metalc ? metalc21 B ND1 HIS 94 B HIS 122 1_555 I ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.909 ? 
metalc ? metalc22 B OD2 ASP 96 B ASP 124 1_555 J ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.948 ? 
metalc ? metalc23 B OE1 GLU 124 B GLU 152 1_555 K CA CA . B CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? 
metalc ? metalc24 B OE2 GLU 124 B GLU 152 1_555 K CA CA . B CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? 
metalc ? metalc25 B NE2 HIS 161 B HIS 189 1_555 I ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? 
metalc ? metalc26 B SG CYS 180 B CYS 208 1_555 J ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? 
metalc ? metalc27 B OD1 ASP 195 B ASP 223 1_555 K CA CA . B CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.838 ? 
metalc ? metalc28 B OD2 ASP 195 B ASP 223 1_555 K CA CA . B CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? 
metalc ? metalc29 B NE2 HIS 222 B HIS 250 1_555 J ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? 
metalc ? metalc30 K CA CA . B CA 303 1_555 P O HOH . B HOH 469 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.542 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     8B20 
_atom_sites.fract_transf_matrix[1][1]    0.012976 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014196 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01355 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ZN A 1 301 301 ZN ZN . 
D 2 ZN A 1 302 302 ZN ZN . 
E 3 CA A 1 303 303 CA CA . 
F 3 CA A 1 304 304 CA CA . 
G 4 EDO A 1 305 306 EDO EDO . 
H 5 OQK A 1 306 307 OQK DRG . 
I 2 ZN B 1 301 301 ZN ZN . 
J 2 ZN B 1 302 302 ZN ZN . 
K 3 CA B 1 303 304 CA CA . 
L 6 EPE B 1 304 306 EPE EPE . 
M 4 EDO B 1 305 307 EDO EDO . 
N 4 EDO B 1 306 308 EDO EDO . 
O 7 HOH A 1 401 61 HOH HOH . 
O 7 HOH A 2 402 36 HOH HOH . 
O 7 HOH A 3 403 97 HOH HOH . 
O 7 HOH A 4 404 119 HOH HOH . 
O 7 HOH A 5 405 8 HOH HOH . 
O 7 HOH A 6 406 108 HOH HOH . 
O 7 HOH A 7 407 115 HOH HOH . 
O 7 HOH A 8 408 75 HOH HOH . 
O 7 HOH A 9 409 133 HOH HOH . 
O 7 HOH A 10 410 59 HOH HOH . 
O 7 HOH A 11 411 82 HOH HOH . 
O 7 HOH A 12 412 134 HOH HOH . 
O 7 HOH A 13 413 13 HOH HOH . 
O 7 HOH A 14 414 128 HOH HOH . 
O 7 HOH A 15 415 103 HOH HOH . 
O 7 HOH A 16 416 5 HOH HOH . 
O 7 HOH A 17 417 96 HOH HOH . 
O 7 HOH A 18 418 126 HOH HOH . 
O 7 HOH A 19 419 62 HOH HOH . 
O 7 HOH A 20 420 49 HOH HOH . 
O 7 HOH A 21 421 26 HOH HOH . 
O 7 HOH A 22 422 17 HOH HOH . 
O 7 HOH A 23 423 22 HOH HOH . 
O 7 HOH A 24 424 95 HOH HOH . 
O 7 HOH A 25 425 3 HOH HOH . 
O 7 HOH A 26 426 68 HOH HOH . 
O 7 HOH A 27 427 15 HOH HOH . 
O 7 HOH A 28 428 78 HOH HOH . 
O 7 HOH A 29 429 57 HOH HOH . 
O 7 HOH A 30 430 63 HOH HOH . 
O 7 HOH A 31 431 112 HOH HOH . 
O 7 HOH A 32 432 55 HOH HOH . 
O 7 HOH A 33 433 72 HOH HOH . 
O 7 HOH A 34 434 94 HOH HOH . 
O 7 HOH A 35 435 53 HOH HOH . 
O 7 HOH A 36 436 104 HOH HOH . 
O 7 HOH A 37 437 40 HOH HOH . 
O 7 HOH A 38 438 90 HOH HOH . 
O 7 HOH A 39 439 91 HOH HOH . 
O 7 HOH A 40 440 98 HOH HOH . 
O 7 HOH A 41 441 116 HOH HOH . 
O 7 HOH A 42 442 105 HOH HOH . 
O 7 HOH A 43 443 89 HOH HOH . 
O 7 HOH A 44 444 65 HOH HOH . 
O 7 HOH A 45 445 35 HOH HOH . 
O 7 HOH A 46 446 58 HOH HOH . 
O 7 HOH A 47 447 37 HOH HOH . 
O 7 HOH A 48 448 86 HOH HOH . 
O 7 HOH A 49 449 47 HOH HOH . 
O 7 HOH A 50 450 130 HOH HOH . 
O 7 HOH A 51 451 10 HOH HOH . 
O 7 HOH A 52 452 99 HOH HOH . 
O 7 HOH A 53 453 28 HOH HOH . 
O 7 HOH A 54 454 18 HOH HOH . 
O 7 HOH A 55 455 129 HOH HOH . 
O 7 HOH A 56 456 131 HOH HOH . 
O 7 HOH A 57 457 132 HOH HOH . 
O 7 HOH A 58 458 127 HOH HOH . 
O 7 HOH A 59 459 54 HOH HOH . 
O 7 HOH A 60 460 79 HOH HOH . 
P 7 HOH B 1 401 64 HOH HOH . 
P 7 HOH B 2 402 48 HOH HOH . 
P 7 HOH B 3 403 76 HOH HOH . 
P 7 HOH B 4 404 118 HOH HOH . 
P 7 HOH B 5 405 29 HOH HOH . 
P 7 HOH B 6 406 51 HOH HOH . 
P 7 HOH B 7 407 113 HOH HOH . 
P 7 HOH B 8 408 7 HOH HOH . 
P 7 HOH B 9 409 92 HOH HOH . 
P 7 HOH B 10 410 32 HOH HOH . 
P 7 HOH B 11 411 38 HOH HOH . 
P 7 HOH B 12 412 106 HOH HOH . 
P 7 HOH B 13 413 43 HOH HOH . 
P 7 HOH B 14 414 52 HOH HOH . 
P 7 HOH B 15 415 1 HOH HOH . 
P 7 HOH B 16 416 117 HOH HOH . 
P 7 HOH B 17 417 31 HOH HOH . 
P 7 HOH B 18 418 85 HOH HOH . 
P 7 HOH B 19 419 60 HOH HOH . 
P 7 HOH B 20 420 12 HOH HOH . 
P 7 HOH B 21 421 4 HOH HOH . 
P 7 HOH B 22 422 21 HOH HOH . 
P 7 HOH B 23 423 39 HOH HOH . 
P 7 HOH B 24 424 25 HOH HOH . 
P 7 HOH B 25 425 24 HOH HOH . 
P 7 HOH B 26 426 34 HOH HOH . 
P 7 HOH B 27 427 101 HOH HOH . 
P 7 HOH B 28 428 2 HOH HOH . 
P 7 HOH B 29 429 107 HOH HOH . 
P 7 HOH B 30 430 70 HOH HOH . 
P 7 HOH B 31 431 14 HOH HOH . 
P 7 HOH B 32 432 109 HOH HOH . 
P 7 HOH B 33 433 33 HOH HOH . 
P 7 HOH B 34 434 111 HOH HOH . 
P 7 HOH B 35 435 16 HOH HOH . 
P 7 HOH B 36 436 102 HOH HOH . 
P 7 HOH B 37 437 124 HOH HOH . 
P 7 HOH B 38 438 44 HOH HOH . 
P 7 HOH B 39 439 83 HOH HOH . 
P 7 HOH B 40 440 67 HOH HOH . 
P 7 HOH B 41 441 71 HOH HOH . 
P 7 HOH B 42 442 114 HOH HOH . 
P 7 HOH B 43 443 23 HOH HOH . 
P 7 HOH B 44 444 69 HOH HOH . 
P 7 HOH B 45 445 73 HOH HOH . 
P 7 HOH B 46 446 122 HOH HOH . 
P 7 HOH B 47 447 11 HOH HOH . 
P 7 HOH B 48 448 41 HOH HOH . 
P 7 HOH B 49 449 74 HOH HOH . 
P 7 HOH B 50 450 56 HOH HOH . 
P 7 HOH B 51 451 88 HOH HOH . 
P 7 HOH B 52 452 100 HOH HOH . 
P 7 HOH B 53 453 30 HOH HOH . 
P 7 HOH B 54 454 87 HOH HOH . 
P 7 HOH B 55 455 9 HOH HOH . 
P 7 HOH B 56 456 46 HOH HOH . 
P 7 HOH B 57 457 77 HOH HOH . 
P 7 HOH B 58 458 84 HOH HOH . 
P 7 HOH B 59 459 27 HOH HOH . 
P 7 HOH B 60 460 66 HOH HOH . 
P 7 HOH B 61 461 110 HOH HOH . 
P 7 HOH B 62 462 19 HOH HOH . 
P 7 HOH B 63 463 123 HOH HOH . 
P 7 HOH B 64 464 45 HOH HOH . 
P 7 HOH B 65 465 42 HOH HOH . 
P 7 HOH B 66 466 6 HOH HOH . 
P 7 HOH B 67 467 93 HOH HOH . 
P 7 HOH B 68 468 125 HOH HOH . 
P 7 HOH B 69 469 121 HOH HOH . 
P 7 HOH B 70 470 20 HOH HOH . 
P 7 HOH B 71 471 50 HOH HOH . 
P 7 HOH B 72 472 80 HOH HOH . 
P 7 HOH B 73 473 120 HOH HOH . 
P 7 HOH B 74 474 81 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . M 4 -30.118 2.986 5.675 1 42.39 0 C1 EDO 305 B 1 
HETATM 2 O O1 EDO . . . M 4 -30.535 3.07 7.009 1 40.62 0 O1 EDO 305 B 1 
HETATM 3 C C2 EDO . . . M 4 -28.654 2.928 5.635 1 34.29 0 C2 EDO 305 B 1 
HETATM 4 O O2 EDO . . . M 4 -28.268 1.741 6.225 1 41.02 0 O2 EDO 305 B 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           296 
_model_server_stats.encode_time_ms          13 
_model_server_stats.element_count           4 
#