data_8B2B # _model_server_result.job_id 7eo0d-1h8jpRMA5sy_zQ4g _model_server_result.datetime_utc '2025-04-28 06:14:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8b2b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 8B2B # _exptl.entry_id 8B2B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 84.246 _cell.angle_beta 85.965 _cell.angle_gamma 60.935 _cell.entry_id 8B2B _cell.length_a 42.503 _cell.length_b 43.626 _cell.length_c 72.372 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8B2B _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 G N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 170 AAA LYS 170 1_555 C CAC PVI . AAA PVI 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.301 ? covale ? covale2 B NZ LYS 170 BBB LYS 170 1_555 F CAC PVI . BBB PVI 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.301 ? metalc ? metalc1 A OE1 GLU 86 AAA GLU 86 1_555 D NA NA . AAA NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.577 ? metalc ? metalc2 A OG SER 141 AAA SER 141 1_555 D NA NA . AAA NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.834 ? metalc ? metalc3 B OE1 GLU 86 BBB GLU 86 1_555 H NA NA . BBB NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.667 ? metalc ? metalc4 B O ALA 122 BBB ALA 122 1_555 G NA NA . BBB NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc5 B OG SER 141 BBB SER 141 1_555 H NA NA . BBB NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.723 ? metalc ? metalc6 G NA NA . BBB NA 302 1_555 J O HOH . BBB HOH 464 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.709 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8B2B _atom_sites.fract_transf_matrix[1][1] 0.023528 _atom_sites.fract_transf_matrix[1][2] -0.013077 _atom_sites.fract_transf_matrix[1][3] -0.000671 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.026225 _atom_sites.fract_transf_matrix[2][3] -0.001993 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013892 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PVI AAA 1 301 301 PVI DRG . D 3 NA AAA 1 302 1 NA NA . E 3 NA AAA 1 303 4 NA NA . F 2 PVI BBB 1 301 301 PVI DRG . G 3 NA BBB 1 302 2 NA NA . H 3 NA BBB 1 303 3 NA NA . I 4 HOH AAA 1 401 46 HOH HOH . I 4 HOH AAA 2 402 84 HOH HOH . I 4 HOH AAA 3 403 135 HOH HOH . I 4 HOH AAA 4 404 37 HOH HOH . I 4 HOH AAA 5 405 89 HOH HOH . I 4 HOH AAA 6 406 24 HOH HOH . I 4 HOH AAA 7 407 95 HOH HOH . I 4 HOH AAA 8 408 116 HOH HOH . I 4 HOH AAA 9 409 128 HOH HOH . I 4 HOH AAA 10 410 79 HOH HOH . I 4 HOH AAA 11 411 102 HOH HOH . I 4 HOH AAA 12 412 120 HOH HOH . I 4 HOH AAA 13 413 14 HOH HOH . I 4 HOH AAA 14 414 119 HOH HOH . I 4 HOH AAA 15 415 35 HOH HOH . I 4 HOH AAA 16 416 61 HOH HOH . I 4 HOH AAA 17 417 74 HOH HOH . I 4 HOH AAA 18 418 49 HOH HOH . I 4 HOH AAA 19 419 139 HOH HOH . I 4 HOH AAA 20 420 19 HOH HOH . I 4 HOH AAA 21 421 38 HOH HOH . I 4 HOH AAA 22 422 113 HOH HOH . I 4 HOH AAA 23 423 76 HOH HOH . I 4 HOH AAA 24 424 109 HOH HOH . I 4 HOH AAA 25 425 111 HOH HOH . I 4 HOH AAA 26 426 97 HOH HOH . I 4 HOH AAA 27 427 92 HOH HOH . I 4 HOH AAA 28 428 107 HOH HOH . I 4 HOH AAA 29 429 30 HOH HOH . I 4 HOH AAA 30 430 131 HOH HOH . I 4 HOH AAA 31 431 64 HOH HOH . I 4 HOH AAA 32 432 51 HOH HOH . I 4 HOH AAA 33 433 6 HOH HOH . I 4 HOH AAA 34 434 55 HOH HOH . I 4 HOH AAA 35 435 143 HOH HOH . I 4 HOH AAA 36 436 34 HOH HOH . I 4 HOH AAA 37 437 48 HOH HOH . I 4 HOH AAA 38 438 85 HOH HOH . I 4 HOH AAA 39 439 42 HOH HOH . I 4 HOH AAA 40 440 1 HOH HOH . I 4 HOH AAA 41 441 69 HOH HOH . I 4 HOH AAA 42 442 73 HOH HOH . I 4 HOH AAA 43 443 32 HOH HOH . I 4 HOH AAA 44 444 110 HOH HOH . I 4 HOH AAA 45 445 12 HOH HOH . I 4 HOH AAA 46 446 28 HOH HOH . I 4 HOH AAA 47 447 66 HOH HOH . I 4 HOH AAA 48 448 58 HOH HOH . I 4 HOH AAA 49 449 137 HOH HOH . I 4 HOH AAA 50 450 43 HOH HOH . I 4 HOH AAA 51 451 105 HOH HOH . I 4 HOH AAA 52 452 80 HOH HOH . I 4 HOH AAA 53 453 81 HOH HOH . I 4 HOH AAA 54 454 5 HOH HOH . I 4 HOH AAA 55 455 132 HOH HOH . I 4 HOH AAA 56 456 133 HOH HOH . I 4 HOH AAA 57 457 36 HOH HOH . I 4 HOH AAA 58 458 21 HOH HOH . I 4 HOH AAA 59 459 146 HOH HOH . I 4 HOH AAA 60 460 44 HOH HOH . I 4 HOH AAA 61 461 23 HOH HOH . I 4 HOH AAA 62 462 100 HOH HOH . I 4 HOH AAA 63 463 141 HOH HOH . I 4 HOH AAA 64 464 115 HOH HOH . I 4 HOH AAA 65 465 138 HOH HOH . I 4 HOH AAA 66 466 134 HOH HOH . I 4 HOH AAA 67 467 59 HOH HOH . I 4 HOH AAA 68 468 126 HOH HOH . I 4 HOH AAA 69 469 106 HOH HOH . I 4 HOH AAA 70 470 57 HOH HOH . I 4 HOH AAA 71 471 26 HOH HOH . I 4 HOH AAA 72 472 68 HOH HOH . I 4 HOH AAA 73 473 127 HOH HOH . I 4 HOH AAA 74 474 83 HOH HOH . I 4 HOH AAA 75 475 15 HOH HOH . I 4 HOH AAA 76 476 118 HOH HOH . I 4 HOH AAA 77 477 104 HOH HOH . I 4 HOH AAA 78 478 18 HOH HOH . I 4 HOH AAA 79 479 3 HOH HOH . J 4 HOH BBB 1 401 63 HOH HOH . J 4 HOH BBB 2 402 56 HOH HOH . J 4 HOH BBB 3 403 88 HOH HOH . J 4 HOH BBB 4 404 93 HOH HOH . J 4 HOH BBB 5 405 91 HOH HOH . J 4 HOH BBB 6 406 67 HOH HOH . J 4 HOH BBB 7 407 94 HOH HOH . J 4 HOH BBB 8 408 22 HOH HOH . J 4 HOH BBB 9 409 62 HOH HOH . J 4 HOH BBB 10 410 87 HOH HOH . J 4 HOH BBB 11 411 103 HOH HOH . J 4 HOH BBB 12 412 96 HOH HOH . J 4 HOH BBB 13 413 71 HOH HOH . J 4 HOH BBB 14 414 78 HOH HOH . J 4 HOH BBB 15 415 75 HOH HOH . J 4 HOH BBB 16 416 108 HOH HOH . J 4 HOH BBB 17 417 72 HOH HOH . J 4 HOH BBB 18 418 125 HOH HOH . J 4 HOH BBB 19 419 40 HOH HOH . J 4 HOH BBB 20 420 27 HOH HOH . J 4 HOH BBB 21 421 11 HOH HOH . J 4 HOH BBB 22 422 98 HOH HOH . J 4 HOH BBB 23 423 60 HOH HOH . J 4 HOH BBB 24 424 140 HOH HOH . J 4 HOH BBB 25 425 130 HOH HOH . J 4 HOH BBB 26 426 54 HOH HOH . J 4 HOH BBB 27 427 129 HOH HOH . J 4 HOH BBB 28 428 99 HOH HOH . J 4 HOH BBB 29 429 142 HOH HOH . J 4 HOH BBB 30 430 112 HOH HOH . J 4 HOH BBB 31 431 90 HOH HOH . J 4 HOH BBB 32 432 65 HOH HOH . J 4 HOH BBB 33 433 16 HOH HOH . J 4 HOH BBB 34 434 2 HOH HOH . J 4 HOH BBB 35 435 20 HOH HOH . J 4 HOH BBB 36 436 121 HOH HOH . J 4 HOH BBB 37 437 144 HOH HOH . J 4 HOH BBB 38 438 50 HOH HOH . J 4 HOH BBB 39 439 101 HOH HOH . J 4 HOH BBB 40 440 39 HOH HOH . J 4 HOH BBB 41 441 114 HOH HOH . J 4 HOH BBB 42 442 13 HOH HOH . J 4 HOH BBB 43 443 52 HOH HOH . J 4 HOH BBB 44 444 7 HOH HOH . J 4 HOH BBB 45 445 4 HOH HOH . J 4 HOH BBB 46 446 70 HOH HOH . J 4 HOH BBB 47 447 47 HOH HOH . J 4 HOH BBB 48 448 124 HOH HOH . J 4 HOH BBB 49 449 45 HOH HOH . J 4 HOH BBB 50 450 41 HOH HOH . J 4 HOH BBB 51 451 82 HOH HOH . J 4 HOH BBB 52 452 8 HOH HOH . J 4 HOH BBB 53 453 117 HOH HOH . J 4 HOH BBB 54 454 53 HOH HOH . J 4 HOH BBB 55 455 145 HOH HOH . J 4 HOH BBB 56 456 9 HOH HOH . J 4 HOH BBB 57 457 10 HOH HOH . J 4 HOH BBB 58 458 31 HOH HOH . J 4 HOH BBB 59 459 136 HOH HOH . J 4 HOH BBB 60 460 25 HOH HOH . J 4 HOH BBB 61 461 122 HOH HOH . J 4 HOH BBB 62 462 123 HOH HOH . J 4 HOH BBB 63 463 33 HOH HOH . J 4 HOH BBB 64 464 77 HOH HOH . J 4 HOH BBB 65 465 29 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 30.736 _atom_site.Cartn_y 12.627 _atom_site.Cartn_z 31.613 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 42.12 _atom_site.pdbx_formal_charge 0 _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 302 _atom_site.auth_asym_id AAA _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 257 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #