data_8B2G # _model_server_result.job_id 8cSzDq5sB0f4W-MBqjQmmw _model_server_result.datetime_utc '2025-03-06 07:24:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8b2g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":102}' # _entry.id 8B2G # _exptl.entry_id 8B2G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 112.131 _cell.angle_gamma 90 _cell.entry_id 8B2G _cell.length_a 36.142 _cell.length_b 59.824 _cell.length_c 36.109 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8B2G _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,H 1 1 B,F,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 F N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 10 A CYS 10 1_555 A SG CYS 54 A CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? disulf ? disulf2 A SG CYS 34 A CYS 34 1_555 A SG CYS 73 A CYS 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? disulf ? disulf3 B SG CYS 10 B CYS 10 1_555 B SG CYS 54 B CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? disulf ? disulf4 B SG CYS 34 B CYS 34 1_555 B SG CYS 73 B CYS 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? metalc ? metalc1 A N TYR 1 A TYR 1 1_555 E ZN ZN . A ZN 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc2 A OD1 ASP 29 A ASP 29 1_555 E ZN ZN . A ZN 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.911 ? metalc ? metalc3 E ZN ZN . A ZN 103 1_555 B N TYR 1 B TYR 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc4 E ZN ZN . A ZN 103 1_555 B OD1 ASP 29 B ASP 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.925 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 8B2G _atom_sites.fract_transf_matrix[1][1] 0.027669 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.011253 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016716 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.029897 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EDO A 1 101 102 EDO EDO . D 2 EDO A 1 102 101 EDO EDO . E 3 ZN A 1 103 1 ZN ZN . F 2 EDO B 1 101 101 EDO EDO . G 2 EDO B 1 102 102 EDO EDO . H 4 HOH A 1 201 35 HOH HOH . H 4 HOH A 2 202 23 HOH HOH . H 4 HOH A 3 203 88 HOH HOH . H 4 HOH A 4 204 62 HOH HOH . H 4 HOH A 5 205 106 HOH HOH . H 4 HOH A 6 206 18 HOH HOH . H 4 HOH A 7 207 95 HOH HOH . H 4 HOH A 8 208 68 HOH HOH . H 4 HOH A 9 209 103 HOH HOH . H 4 HOH A 10 210 98 HOH HOH . H 4 HOH A 11 211 5 HOH HOH . H 4 HOH A 12 212 60 HOH HOH . H 4 HOH A 13 213 8 HOH HOH . H 4 HOH A 14 214 13 HOH HOH . H 4 HOH A 15 215 29 HOH HOH . H 4 HOH A 16 216 34 HOH HOH . H 4 HOH A 17 217 9 HOH HOH . H 4 HOH A 18 218 65 HOH HOH . H 4 HOH A 19 219 15 HOH HOH . H 4 HOH A 20 220 55 HOH HOH . H 4 HOH A 21 221 107 HOH HOH . H 4 HOH A 22 222 39 HOH HOH . H 4 HOH A 23 223 54 HOH HOH . H 4 HOH A 24 224 40 HOH HOH . H 4 HOH A 25 225 14 HOH HOH . H 4 HOH A 26 226 37 HOH HOH . H 4 HOH A 27 227 93 HOH HOH . H 4 HOH A 28 228 74 HOH HOH . H 4 HOH A 29 229 85 HOH HOH . H 4 HOH A 30 230 53 HOH HOH . H 4 HOH A 31 231 97 HOH HOH . H 4 HOH A 32 232 96 HOH HOH . H 4 HOH A 33 233 63 HOH HOH . H 4 HOH A 34 234 112 HOH HOH . H 4 HOH A 35 235 111 HOH HOH . H 4 HOH A 36 236 56 HOH HOH . H 4 HOH A 37 237 1 HOH HOH . H 4 HOH A 38 238 50 HOH HOH . H 4 HOH A 39 239 108 HOH HOH . H 4 HOH A 40 240 51 HOH HOH . H 4 HOH A 41 241 100 HOH HOH . H 4 HOH A 42 242 66 HOH HOH . H 4 HOH A 43 243 78 HOH HOH . H 4 HOH A 44 244 101 HOH HOH . I 4 HOH B 1 201 10 HOH HOH . I 4 HOH B 2 202 36 HOH HOH . I 4 HOH B 3 203 11 HOH HOH . I 4 HOH B 4 204 27 HOH HOH . I 4 HOH B 5 205 102 HOH HOH . I 4 HOH B 6 206 77 HOH HOH . I 4 HOH B 7 207 70 HOH HOH . I 4 HOH B 8 208 42 HOH HOH . I 4 HOH B 9 209 16 HOH HOH . I 4 HOH B 10 210 61 HOH HOH . I 4 HOH B 11 211 92 HOH HOH . I 4 HOH B 12 212 22 HOH HOH . I 4 HOH B 13 213 7 HOH HOH . I 4 HOH B 14 214 12 HOH HOH . I 4 HOH B 15 215 28 HOH HOH . I 4 HOH B 16 216 6 HOH HOH . I 4 HOH B 17 217 81 HOH HOH . I 4 HOH B 18 218 33 HOH HOH . I 4 HOH B 19 219 82 HOH HOH . I 4 HOH B 20 220 4 HOH HOH . I 4 HOH B 21 221 79 HOH HOH . I 4 HOH B 22 222 84 HOH HOH . I 4 HOH B 23 223 110 HOH HOH . I 4 HOH B 24 224 19 HOH HOH . I 4 HOH B 25 225 30 HOH HOH . I 4 HOH B 26 226 58 HOH HOH . I 4 HOH B 27 227 26 HOH HOH . I 4 HOH B 28 228 109 HOH HOH . I 4 HOH B 29 229 67 HOH HOH . I 4 HOH B 30 230 44 HOH HOH . I 4 HOH B 31 231 59 HOH HOH . I 4 HOH B 32 232 25 HOH HOH . I 4 HOH B 33 233 72 HOH HOH . I 4 HOH B 34 234 87 HOH HOH . I 4 HOH B 35 235 71 HOH HOH . I 4 HOH B 36 236 90 HOH HOH . I 4 HOH B 37 237 32 HOH HOH . I 4 HOH B 38 238 57 HOH HOH . I 4 HOH B 39 239 73 HOH HOH . I 4 HOH B 40 240 17 HOH HOH . I 4 HOH B 41 241 43 HOH HOH . I 4 HOH B 42 242 99 HOH HOH . I 4 HOH B 43 243 3 HOH HOH . I 4 HOH B 44 244 21 HOH HOH . I 4 HOH B 45 245 45 HOH HOH . I 4 HOH B 46 246 75 HOH HOH . I 4 HOH B 47 247 52 HOH HOH . I 4 HOH B 48 248 49 HOH HOH . I 4 HOH B 49 249 48 HOH HOH . I 4 HOH B 50 250 47 HOH HOH . I 4 HOH B 51 251 105 HOH HOH . I 4 HOH B 52 252 104 HOH HOH . I 4 HOH B 53 253 76 HOH HOH . I 4 HOH B 54 254 69 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . G 2 -6.188 10.339 8.61 1 29.12 0 C1 EDO 102 B 1 HETATM 2 O O1 EDO . . . G 2 -5.882 9.209 9.471 1 23.38 0 O1 EDO 102 B 1 HETATM 3 C C2 EDO . . . G 2 -5.291 10.533 7.418 1 30.56 0 C2 EDO 102 B 1 HETATM 4 O O2 EDO . . . G 2 -4.554 9.39 7.043 1 28.37 0 O2 EDO 102 B 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #