data_8B2J
#
_model_server_result.job_id            A1rjbYYLSghUwvbldejoPg 
_model_server_result.datetime_utc      '2024-10-10 13:32:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8b2j 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":405}' 
#
_entry.id    8B2J 
#
_exptl.entry_id    8B2J 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8B2J 
_cell.length_a            67.357 
_cell.length_b            67.368 
_cell.length_c            136.317 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8B2J 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,N 1 1 
B,I,J,K,L,M,O 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 F N N 
? 4 G N N 
? 4 H N N 
? 4 J N N 
? 4 K N N 
? 4 L N N 
? 4 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O ILE 34 A ILE 171 1_555 F NA NA . A NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.539 ? 
metalc ? metalc2 A OD1 ASN 50 A ASN 187 1_555 D CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.856 ? 
metalc ? metalc3 A O ASN 51 A ASN 188 1_555 D CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.814 ? 
metalc ? metalc4 A O ARG 54 A ARG 191 1_555 D CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.773 ? 
metalc ? metalc5 A O SER 58 A SER 195 1_555 G NA NA . A NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.625 ? 
metalc ? metalc6 A O ARG 60 A ARG 197 1_555 G NA NA . A NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? 
metalc ? metalc7 A OE1 GLN 91 A GLN 228 1_555 F NA NA . A NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.553 ? 
metalc ? metalc8 A O ARG 95 A ARG 232 1_555 E NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.786 ? 
metalc ? metalc9 A OG SER 104 A SER 241 1_555 H NA NA . A NA 406 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.852 ? 
metalc ? metalc10 A OG SER 106 A SER 243 1_555 H NA NA . A NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.669 ? 
metalc ? metalc11 H NA NA . A NA 406 1_555 B O LYS 99 B LYS 236 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.714 ? 
metalc ? metalc12 B O ILE 34 B ILE 171 1_555 M NA NA . B NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? 
metalc ? metalc13 B OD1 ASN 50 B ASN 187 1_555 I CA CA . B CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.743 ? 
metalc ? metalc14 B O ASN 51 B ASN 188 1_555 I CA CA . B CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.889 ? 
metalc ? metalc15 B OD1 ASN 51 B ASN 188 1_555 K NA NA . B NA 403 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.114 ? 
metalc ? metalc16 B O ARG 54 B ARG 191 1_555 I CA CA . B CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.839 ? 
metalc ? metalc17 B O SER 58 B SER 195 1_555 L NA NA . B NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.693 ? 
metalc ? metalc18 B O ARG 60 B ARG 197 1_555 L NA NA . B NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? 
metalc ? metalc19 B O GLY 70 B GLY 207 1_555 K NA NA . B NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.986 ? 
metalc ? metalc20 B OE1 GLN 91 B GLN 228 1_555 M NA NA . B NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.462 ? 
metalc ? metalc21 B O ARG 95 B ARG 232 1_555 J NA NA . B NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.941 ? 
metalc ? metalc22 B O GLN 129 B GLN 266 1_555 K NA NA . B NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.694 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     8B2J 
_atom_sites.fract_transf_matrix[1][1]    0.014846 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014844 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007336 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GJF A 1 401 1 GJF LIG . 
D 3 CA A 1 402 2 CA CA . 
E 4 NA A 1 403 2 NA NA . 
F 4 NA A 1 404 3 NA NA . 
G 4 NA A 1 405 4 NA NA . 
H 4 NA A 1 406 8 NA NA . 
I 3 CA B 1 401 1 CA CA . 
J 4 NA B 1 402 1 NA NA . 
K 4 NA B 1 403 5 NA NA . 
L 4 NA B 1 404 6 NA NA . 
M 4 NA B 1 405 7 NA NA . 
N 5 HOH A 1 501 30 HOH HOH . 
N 5 HOH A 2 502 66 HOH HOH . 
N 5 HOH A 3 503 33 HOH HOH . 
N 5 HOH A 4 504 10 HOH HOH . 
N 5 HOH A 5 505 29 HOH HOH . 
N 5 HOH A 6 506 26 HOH HOH . 
N 5 HOH A 7 507 51 HOH HOH . 
N 5 HOH A 8 508 2 HOH HOH . 
N 5 HOH A 9 509 48 HOH HOH . 
N 5 HOH A 10 510 69 HOH HOH . 
N 5 HOH A 11 511 20 HOH HOH . 
N 5 HOH A 12 512 16 HOH HOH . 
N 5 HOH A 13 513 25 HOH HOH . 
N 5 HOH A 14 514 19 HOH HOH . 
N 5 HOH A 15 515 45 HOH HOH . 
N 5 HOH A 16 516 5 HOH HOH . 
N 5 HOH A 17 517 54 HOH HOH . 
N 5 HOH A 18 518 12 HOH HOH . 
N 5 HOH A 19 519 36 HOH HOH . 
N 5 HOH A 20 520 23 HOH HOH . 
N 5 HOH A 21 521 11 HOH HOH . 
N 5 HOH A 22 522 44 HOH HOH . 
N 5 HOH A 23 523 60 HOH HOH . 
N 5 HOH A 24 524 70 HOH HOH . 
N 5 HOH A 25 525 50 HOH HOH . 
N 5 HOH A 26 526 55 HOH HOH . 
O 5 HOH B 1 501 42 HOH HOH . 
O 5 HOH B 2 502 67 HOH HOH . 
O 5 HOH B 3 503 27 HOH HOH . 
O 5 HOH B 4 504 28 HOH HOH . 
O 5 HOH B 5 505 40 HOH HOH . 
O 5 HOH B 6 506 37 HOH HOH . 
O 5 HOH B 7 507 56 HOH HOH . 
O 5 HOH B 8 508 49 HOH HOH . 
O 5 HOH B 9 509 58 HOH HOH . 
O 5 HOH B 10 510 62 HOH HOH . 
O 5 HOH B 11 511 3 HOH HOH . 
O 5 HOH B 12 512 53 HOH HOH . 
O 5 HOH B 13 513 8 HOH HOH . 
O 5 HOH B 14 514 38 HOH HOH . 
O 5 HOH B 15 515 6 HOH HOH . 
O 5 HOH B 16 516 9 HOH HOH . 
O 5 HOH B 17 517 43 HOH HOH . 
O 5 HOH B 18 518 17 HOH HOH . 
O 5 HOH B 19 519 34 HOH HOH . 
O 5 HOH B 20 520 52 HOH HOH . 
O 5 HOH B 21 521 65 HOH HOH . 
O 5 HOH B 22 522 64 HOH HOH . 
O 5 HOH B 23 523 41 HOH HOH . 
O 5 HOH B 24 524 63 HOH HOH . 
O 5 HOH B 25 525 21 HOH HOH . 
O 5 HOH B 26 526 59 HOH HOH . 
O 5 HOH B 27 527 61 HOH HOH . 
O 5 HOH B 28 528 24 HOH HOH . 
O 5 HOH B 29 529 35 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         M 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               9.464 
_atom_site.Cartn_y               23.088 
_atom_site.Cartn_z               22.156 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        49.16 
_atom_site.pdbx_formal_charge    1 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           405 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           271 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#