data_8B2O # _model_server_result.job_id dJd3GFTToe_AeUMe90datQ _model_server_result.datetime_utc '2025-06-24 22:27:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8b2o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 8B2O # _exptl.entry_id 8B2O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 351.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R,4S)-2-[(1R)-1-{[(2R)-2-amino-2-phenylacetyl]amino}-2-oxoethyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8B2O _cell.length_a 41.812 _cell.length_b 41.812 _cell.length_c 232.962 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8B2O _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall 'P 32 2"' _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id OG _struct_conn.ptnr1_label_comp_id SER _struct_conn.ptnr1_label_seq_id 43 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id SER _struct_conn.ptnr1_auth_seq_id 70 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id AIX _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id AIX _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.408 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C16 H21 N3 O4 S' _chem_comp.formula_weight 351.421 _chem_comp.id AIX _chem_comp.mon_nstd_flag . _chem_comp.name '(2R,4S)-2-[(1R)-1-{[(2R)-2-amino-2-phenylacetyl]amino}-2-oxoethyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'AMPICILLIN (open form)' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C9 C8 AIX doub 1 n y C8 C7 AIX sing 2 n y C8 H8 AIX sing 3 n n C7 C5 AIX doub 4 n y C11 C5 AIX sing 5 n y C5 C4 AIX sing 6 n n C1 C6 AIX sing 7 n n C16 C6 AIX sing 8 n n C6 C12 AIX sing 9 n n C6 S1 AIX sing 10 n n C14 N1 AIX sing 11 n n N1 C3 AIX sing 12 n n N1 HN1 AIX sing 13 n n O2 C2 AIX doub 14 n n O1 C2 AIX sing 15 n n C2 C12 AIX sing 16 n n C12 N3 AIX sing 17 n n N3 C13 AIX sing 18 n n N3 HN3 AIX sing 19 n n C3 C4 AIX sing 20 n n C4 N2 AIX sing 21 n n C4 H4 AIX sing 22 n n C1 H1 AIX sing 23 n n C1 H1A AIX sing 24 n n C1 H1B AIX sing 25 n n C3 O3 AIX doub 26 n n C7 H7 AIX sing 27 n n C9 C10 AIX sing 28 n y C9 H9 AIX sing 29 n n C10 C11 AIX doub 30 n y C10 H10 AIX sing 31 n n C11 H11 AIX sing 32 n n C12 H12 AIX sing 33 n n S1 C13 AIX sing 34 n n C13 C14 AIX sing 35 n n C13 H13 AIX sing 36 n n C15 C14 AIX sing 37 n n C14 H14 AIX sing 38 n n O4 C15 AIX doub 39 n n C15 H15 AIX sing 40 n n C16 H16 AIX sing 41 n n C16 H16A AIX sing 42 n n C16 H16B AIX sing 43 n n N2 HN2 AIX sing 44 n n N2 HN2A AIX sing 45 n n O1 HO1 AIX sing 46 n n # _atom_sites.entry_id 8B2O _atom_sites.fract_transf_matrix[1][1] 0.023917 _atom_sites.fract_transf_matrix[1][2] 0.013808 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.027616 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004293 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AIX A 1 301 301 AIX AIX . C 3 HOH A 1 401 71 HOH HOH . C 3 HOH A 2 402 104 HOH HOH . C 3 HOH A 3 403 126 HOH HOH . C 3 HOH A 4 404 139 HOH HOH . C 3 HOH A 5 405 136 HOH HOH . C 3 HOH A 6 406 110 HOH HOH . C 3 HOH A 7 407 82 HOH HOH . C 3 HOH A 8 408 98 HOH HOH . C 3 HOH A 9 409 115 HOH HOH . C 3 HOH A 10 410 88 HOH HOH . C 3 HOH A 11 411 13 HOH HOH . C 3 HOH A 12 412 31 HOH HOH . C 3 HOH A 13 413 54 HOH HOH . C 3 HOH A 14 414 84 HOH HOH . C 3 HOH A 15 415 87 HOH HOH . C 3 HOH A 16 416 39 HOH HOH . C 3 HOH A 17 417 130 HOH HOH . C 3 HOH A 18 418 103 HOH HOH . C 3 HOH A 19 419 18 HOH HOH . C 3 HOH A 20 420 5 HOH HOH . C 3 HOH A 21 421 8 HOH HOH . C 3 HOH A 22 422 145 HOH HOH . C 3 HOH A 23 423 21 HOH HOH . C 3 HOH A 24 424 106 HOH HOH . C 3 HOH A 25 425 81 HOH HOH . C 3 HOH A 26 426 20 HOH HOH . C 3 HOH A 27 427 33 HOH HOH . C 3 HOH A 28 428 43 HOH HOH . C 3 HOH A 29 429 14 HOH HOH . C 3 HOH A 30 430 97 HOH HOH . C 3 HOH A 31 431 94 HOH HOH . C 3 HOH A 32 432 129 HOH HOH . C 3 HOH A 33 433 45 HOH HOH . C 3 HOH A 34 434 61 HOH HOH . C 3 HOH A 35 435 10 HOH HOH . C 3 HOH A 36 436 16 HOH HOH . C 3 HOH A 37 437 38 HOH HOH . C 3 HOH A 38 438 93 HOH HOH . C 3 HOH A 39 439 2 HOH HOH . C 3 HOH A 40 440 124 HOH HOH . C 3 HOH A 41 441 122 HOH HOH . C 3 HOH A 42 442 89 HOH HOH . C 3 HOH A 43 443 37 HOH HOH . C 3 HOH A 44 444 28 HOH HOH . C 3 HOH A 45 445 26 HOH HOH . C 3 HOH A 46 446 15 HOH HOH . C 3 HOH A 47 447 3 HOH HOH . C 3 HOH A 48 448 113 HOH HOH . C 3 HOH A 49 449 137 HOH HOH . C 3 HOH A 50 450 107 HOH HOH . C 3 HOH A 51 451 46 HOH HOH . C 3 HOH A 52 452 22 HOH HOH . C 3 HOH A 53 453 24 HOH HOH . C 3 HOH A 54 454 121 HOH HOH . C 3 HOH A 55 455 138 HOH HOH . C 3 HOH A 56 456 7 HOH HOH . C 3 HOH A 57 457 29 HOH HOH . C 3 HOH A 58 458 6 HOH HOH . C 3 HOH A 59 459 48 HOH HOH . C 3 HOH A 60 460 72 HOH HOH . C 3 HOH A 61 461 1 HOH HOH . C 3 HOH A 62 462 101 HOH HOH . C 3 HOH A 63 463 17 HOH HOH . C 3 HOH A 64 464 23 HOH HOH . C 3 HOH A 65 465 116 HOH HOH . C 3 HOH A 66 466 131 HOH HOH . C 3 HOH A 67 467 58 HOH HOH . C 3 HOH A 68 468 120 HOH HOH . C 3 HOH A 69 469 91 HOH HOH . C 3 HOH A 70 470 117 HOH HOH . C 3 HOH A 71 471 36 HOH HOH . C 3 HOH A 72 472 41 HOH HOH . C 3 HOH A 73 473 55 HOH HOH . C 3 HOH A 74 474 141 HOH HOH . C 3 HOH A 75 475 57 HOH HOH . C 3 HOH A 76 476 35 HOH HOH . C 3 HOH A 77 477 135 HOH HOH . C 3 HOH A 78 478 27 HOH HOH . C 3 HOH A 79 479 78 HOH HOH . C 3 HOH A 80 480 76 HOH HOH . C 3 HOH A 81 481 19 HOH HOH . C 3 HOH A 82 482 144 HOH HOH . C 3 HOH A 83 483 127 HOH HOH . C 3 HOH A 84 484 66 HOH HOH . C 3 HOH A 85 485 65 HOH HOH . C 3 HOH A 86 486 105 HOH HOH . C 3 HOH A 87 487 70 HOH HOH . C 3 HOH A 88 488 85 HOH HOH . C 3 HOH A 89 489 25 HOH HOH . C 3 HOH A 90 490 12 HOH HOH . C 3 HOH A 91 491 9 HOH HOH . C 3 HOH A 92 492 112 HOH HOH . C 3 HOH A 93 493 4 HOH HOH . C 3 HOH A 94 494 51 HOH HOH . C 3 HOH A 95 495 44 HOH HOH . C 3 HOH A 96 496 142 HOH HOH . C 3 HOH A 97 497 30 HOH HOH . C 3 HOH A 98 498 75 HOH HOH . C 3 HOH A 99 499 132 HOH HOH . C 3 HOH A 100 500 90 HOH HOH . C 3 HOH A 101 501 96 HOH HOH . C 3 HOH A 102 502 32 HOH HOH . C 3 HOH A 103 503 92 HOH HOH . C 3 HOH A 104 504 73 HOH HOH . C 3 HOH A 105 505 140 HOH HOH . C 3 HOH A 106 506 80 HOH HOH . C 3 HOH A 107 507 34 HOH HOH . C 3 HOH A 108 508 79 HOH HOH . C 3 HOH A 109 509 114 HOH HOH . C 3 HOH A 110 510 109 HOH HOH . C 3 HOH A 111 511 119 HOH HOH . C 3 HOH A 112 512 111 HOH HOH . C 3 HOH A 113 513 102 HOH HOH . C 3 HOH A 114 514 99 HOH HOH . C 3 HOH A 115 515 52 HOH HOH . C 3 HOH A 116 516 83 HOH HOH . C 3 HOH A 117 517 40 HOH HOH . C 3 HOH A 118 518 47 HOH HOH . C 3 HOH A 119 519 49 HOH HOH . C 3 HOH A 120 520 133 HOH HOH . C 3 HOH A 121 521 67 HOH HOH . C 3 HOH A 122 522 56 HOH HOH . C 3 HOH A 123 523 108 HOH HOH . C 3 HOH A 124 524 134 HOH HOH . C 3 HOH A 125 525 118 HOH HOH . C 3 HOH A 126 526 11 HOH HOH . C 3 HOH A 127 527 123 HOH HOH . C 3 HOH A 128 528 60 HOH HOH . C 3 HOH A 129 529 53 HOH HOH . C 3 HOH A 130 530 86 HOH HOH . C 3 HOH A 131 531 74 HOH HOH . C 3 HOH A 132 532 128 HOH HOH . C 3 HOH A 133 533 50 HOH HOH . C 3 HOH A 134 534 62 HOH HOH . C 3 HOH A 135 535 42 HOH HOH . C 3 HOH A 136 536 146 HOH HOH . C 3 HOH A 137 537 95 HOH HOH . C 3 HOH A 138 538 69 HOH HOH . C 3 HOH A 139 539 77 HOH HOH . C 3 HOH A 140 540 100 HOH HOH . C 3 HOH A 141 541 125 HOH HOH . C 3 HOH A 142 542 59 HOH HOH . C 3 HOH A 143 543 143 HOH HOH . C 3 HOH A 144 544 63 HOH HOH . C 3 HOH A 145 545 64 HOH HOH . C 3 HOH A 146 546 68 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C8 AIX . . . B 2 4.987 7.789 -22.337 0.84 37.55 ? C8 AIX 301 A 1 HETATM 2 C C5 AIX . . . B 2 5.458 5.718 -21.236 0.84 30.8 ? C5 AIX 301 A 1 HETATM 3 C C6 AIX . . . B 2 0.887 5.025 -22.685 0.84 28.19 ? C6 AIX 301 A 1 HETATM 4 N N1 AIX . . . B 2 3.18 3.871 -19.886 0.84 23.71 ? N1 AIX 301 A 1 HETATM 5 C C2 AIX . . . B 2 -0.001 2.973 -23.427 0.84 19.7 ? C2 AIX 301 A 1 HETATM 6 N N3 AIX . . . B 2 0.037 3.529 -20.876 0.84 22.17 ? N3 AIX 301 A 1 HETATM 7 C C4 AIX . . . B 2 5.612 4.932 -19.968 0.84 31 ? C4 AIX 301 A 1 HETATM 8 C C1 AIX . . . B 2 1.955 5.34 -23.769 0.84 28.17 ? C1 AIX 301 A 1 HETATM 9 C C3 AIX . . . B 2 4.204 4.752 -19.291 0.84 26.65 ? C3 AIX 301 A 1 HETATM 10 C C7 AIX . . . B 2 5.132 7.058 -21.177 0.84 33.64 ? C7 AIX 301 A 1 HETATM 11 C C9 AIX . . . B 2 5.167 7.182 -23.574 0.84 37.74 ? C9 AIX 301 A 1 HETATM 12 C C10 AIX . . . B 2 5.494 5.835 -23.635 0.84 32.64 ? C10 AIX 301 A 1 HETATM 13 C C11 AIX . . . B 2 5.638 5.105 -22.479 0.84 31.02 ? C11 AIX 301 A 1 HETATM 14 C C12 AIX . . . B 2 0.785 3.639 -22.473 0.84 22.89 ? C12 AIX 301 A 1 HETATM 15 C C13 AIX . . . B 2 0.758 4.48 -20.06 0.84 25.04 ? C13 AIX 301 A 1 HETATM 16 C C14 AIX . . . B 2 1.903 3.729 -19.244 0.84 23.07 ? C14 AIX 301 A 1 HETATM 17 C C15 AIX . . . B 2 1.564 2.257 -19.131 0.84 21.23 ? C15 AIX 301 A 1 HETATM 18 C C16 AIX . . . B 2 -0.435 5.662 -23.084 0.84 25.95 ? C16 AIX 301 A 1 HETATM 19 N N2 AIX . . . B 2 6.507 5.63 -19.07 0.84 37.01 ? N2 AIX 301 A 1 HETATM 20 O O1 AIX . . . B 2 0.434 2.764 -24.592 0.84 26.21 -1 O1 AIX 301 A 1 HETATM 21 O O2 AIX . . . B 2 -1.164 2.554 -23.11 0.84 20.96 ? O2 AIX 301 A 1 HETATM 22 O O3 AIX . . . B 2 3.944 5.34 -18.274 0.84 24.74 ? O3 AIX 301 A 1 HETATM 23 O O4 AIX . . . B 2 1.45 1.544 -20.093 0.84 20.67 ? O4 AIX 301 A 1 HETATM 24 S S1 AIX . . . B 2 1.38 5.592 -21.137 0.84 38.18 ? S1 AIX 301 A 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 379 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 24 #