data_8B2V # _model_server_result.job_id tnqQwbwy3XXueTAEM2DbjA _model_server_result.datetime_utc '2024-10-19 10:16:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8b2v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 8B2V # _exptl.entry_id 8B2V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 351.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R,4S)-2-[(1R)-1-{[(2R)-2-amino-2-phenylacetyl]amino}-2-oxoethyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8B2V _cell.length_a 41.877 _cell.length_b 41.877 _cell.length_c 232.904 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8B2V _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall 'P 32 2"' _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id OG _struct_conn.ptnr1_label_comp_id SER _struct_conn.ptnr1_label_seq_id 43 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id SER _struct_conn.ptnr1_auth_seq_id 70 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id AIX _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id AIX _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.407 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C16 H21 N3 O4 S' _chem_comp.formula_weight 351.421 _chem_comp.id AIX _chem_comp.mon_nstd_flag . _chem_comp.name '(2R,4S)-2-[(1R)-1-{[(2R)-2-amino-2-phenylacetyl]amino}-2-oxoethyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'AMPICILLIN (open form)' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C9 C8 AIX doub 1 n y C8 C7 AIX sing 2 n y C8 H8 AIX sing 3 n n C7 C5 AIX doub 4 n y C11 C5 AIX sing 5 n y C5 C4 AIX sing 6 n n C1 C6 AIX sing 7 n n C16 C6 AIX sing 8 n n C6 C12 AIX sing 9 n n C6 S1 AIX sing 10 n n C14 N1 AIX sing 11 n n N1 C3 AIX sing 12 n n N1 HN1 AIX sing 13 n n O2 C2 AIX doub 14 n n O1 C2 AIX sing 15 n n C2 C12 AIX sing 16 n n C12 N3 AIX sing 17 n n N3 C13 AIX sing 18 n n N3 HN3 AIX sing 19 n n C3 C4 AIX sing 20 n n C4 N2 AIX sing 21 n n C4 H4 AIX sing 22 n n C1 H1 AIX sing 23 n n C1 H1A AIX sing 24 n n C1 H1B AIX sing 25 n n C3 O3 AIX doub 26 n n C7 H7 AIX sing 27 n n C9 C10 AIX sing 28 n y C9 H9 AIX sing 29 n n C10 C11 AIX doub 30 n y C10 H10 AIX sing 31 n n C11 H11 AIX sing 32 n n C12 H12 AIX sing 33 n n S1 C13 AIX sing 34 n n C13 C14 AIX sing 35 n n C13 H13 AIX sing 36 n n C15 C14 AIX sing 37 n n C14 H14 AIX sing 38 n n O4 C15 AIX doub 39 n n C15 H15 AIX sing 40 n n C16 H16 AIX sing 41 n n C16 H16A AIX sing 42 n n C16 H16B AIX sing 43 n n N2 HN2 AIX sing 44 n n N2 HN2A AIX sing 45 n n O1 HO1 AIX sing 46 n n # _atom_sites.entry_id 8B2V _atom_sites.fract_transf_matrix[1][1] 0.023879 _atom_sites.fract_transf_matrix[1][2] 0.013787 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.027574 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004294 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AIX A 1 301 301 AIX AIX . C 3 HOH A 1 401 100 HOH HOH . C 3 HOH A 2 402 101 HOH HOH . C 3 HOH A 3 403 66 HOH HOH . C 3 HOH A 4 404 144 HOH HOH . C 3 HOH A 5 405 160 HOH HOH . C 3 HOH A 6 406 163 HOH HOH . C 3 HOH A 7 407 85 HOH HOH . C 3 HOH A 8 408 172 HOH HOH . C 3 HOH A 9 409 126 HOH HOH . C 3 HOH A 10 410 134 HOH HOH . C 3 HOH A 11 411 111 HOH HOH . C 3 HOH A 12 412 97 HOH HOH . C 3 HOH A 13 413 110 HOH HOH . C 3 HOH A 14 414 81 HOH HOH . C 3 HOH A 15 415 171 HOH HOH . C 3 HOH A 16 416 1 HOH HOH . C 3 HOH A 17 417 142 HOH HOH . C 3 HOH A 18 418 140 HOH HOH . C 3 HOH A 19 419 98 HOH HOH . C 3 HOH A 20 420 167 HOH HOH . C 3 HOH A 21 421 7 HOH HOH . C 3 HOH A 22 422 122 HOH HOH . C 3 HOH A 23 423 149 HOH HOH . C 3 HOH A 24 424 103 HOH HOH . C 3 HOH A 25 425 50 HOH HOH . C 3 HOH A 26 426 186 HOH HOH . C 3 HOH A 27 427 177 HOH HOH . C 3 HOH A 28 428 61 HOH HOH . C 3 HOH A 29 429 135 HOH HOH . C 3 HOH A 30 430 19 HOH HOH . C 3 HOH A 31 431 51 HOH HOH . C 3 HOH A 32 432 181 HOH HOH . C 3 HOH A 33 433 113 HOH HOH . C 3 HOH A 34 434 52 HOH HOH . C 3 HOH A 35 435 127 HOH HOH . C 3 HOH A 36 436 2 HOH HOH . C 3 HOH A 37 437 16 HOH HOH . C 3 HOH A 38 438 60 HOH HOH . C 3 HOH A 39 439 138 HOH HOH . C 3 HOH A 40 440 9 HOH HOH . C 3 HOH A 41 441 25 HOH HOH . C 3 HOH A 42 442 121 HOH HOH . C 3 HOH A 43 443 59 HOH HOH . C 3 HOH A 44 444 108 HOH HOH . C 3 HOH A 45 445 174 HOH HOH . C 3 HOH A 46 446 32 HOH HOH . C 3 HOH A 47 447 150 HOH HOH . C 3 HOH A 48 448 18 HOH HOH . C 3 HOH A 49 449 118 HOH HOH . C 3 HOH A 50 450 24 HOH HOH . C 3 HOH A 51 451 188 HOH HOH . C 3 HOH A 52 452 96 HOH HOH . C 3 HOH A 53 453 124 HOH HOH . C 3 HOH A 54 454 82 HOH HOH . C 3 HOH A 55 455 63 HOH HOH . C 3 HOH A 56 456 76 HOH HOH . C 3 HOH A 57 457 4 HOH HOH . C 3 HOH A 58 458 3 HOH HOH . C 3 HOH A 59 459 37 HOH HOH . C 3 HOH A 60 460 99 HOH HOH . C 3 HOH A 61 461 8 HOH HOH . C 3 HOH A 62 462 58 HOH HOH . C 3 HOH A 63 463 15 HOH HOH . C 3 HOH A 64 464 123 HOH HOH . C 3 HOH A 65 465 47 HOH HOH . C 3 HOH A 66 466 92 HOH HOH . C 3 HOH A 67 467 72 HOH HOH . C 3 HOH A 68 468 30 HOH HOH . C 3 HOH A 69 469 13 HOH HOH . C 3 HOH A 70 470 83 HOH HOH . C 3 HOH A 71 471 184 HOH HOH . C 3 HOH A 72 472 36 HOH HOH . C 3 HOH A 73 473 84 HOH HOH . C 3 HOH A 74 474 11 HOH HOH . C 3 HOH A 75 475 17 HOH HOH . C 3 HOH A 76 476 22 HOH HOH . C 3 HOH A 77 477 5 HOH HOH . C 3 HOH A 78 478 145 HOH HOH . C 3 HOH A 79 479 27 HOH HOH . C 3 HOH A 80 480 38 HOH HOH . C 3 HOH A 81 481 20 HOH HOH . C 3 HOH A 82 482 57 HOH HOH . C 3 HOH A 83 483 28 HOH HOH . C 3 HOH A 84 484 120 HOH HOH . C 3 HOH A 85 485 87 HOH HOH . C 3 HOH A 86 486 39 HOH HOH . C 3 HOH A 87 487 94 HOH HOH . C 3 HOH A 88 488 80 HOH HOH . C 3 HOH A 89 489 6 HOH HOH . C 3 HOH A 90 490 53 HOH HOH . C 3 HOH A 91 491 131 HOH HOH . C 3 HOH A 92 492 165 HOH HOH . C 3 HOH A 93 493 65 HOH HOH . C 3 HOH A 94 494 89 HOH HOH . C 3 HOH A 95 495 21 HOH HOH . C 3 HOH A 96 496 130 HOH HOH . C 3 HOH A 97 497 93 HOH HOH . C 3 HOH A 98 498 23 HOH HOH . C 3 HOH A 99 499 12 HOH HOH . C 3 HOH A 100 500 26 HOH HOH . C 3 HOH A 101 501 116 HOH HOH . C 3 HOH A 102 502 10 HOH HOH . C 3 HOH A 103 503 49 HOH HOH . C 3 HOH A 104 504 35 HOH HOH . C 3 HOH A 105 505 71 HOH HOH . C 3 HOH A 106 506 29 HOH HOH . C 3 HOH A 107 507 112 HOH HOH . C 3 HOH A 108 508 157 HOH HOH . C 3 HOH A 109 509 70 HOH HOH . C 3 HOH A 110 510 33 HOH HOH . C 3 HOH A 111 511 78 HOH HOH . C 3 HOH A 112 512 40 HOH HOH . C 3 HOH A 113 513 95 HOH HOH . C 3 HOH A 114 514 106 HOH HOH . C 3 HOH A 115 515 14 HOH HOH . C 3 HOH A 116 516 176 HOH HOH . C 3 HOH A 117 517 75 HOH HOH . C 3 HOH A 118 518 54 HOH HOH . C 3 HOH A 119 519 34 HOH HOH . C 3 HOH A 120 520 55 HOH HOH . C 3 HOH A 121 521 141 HOH HOH . C 3 HOH A 122 522 109 HOH HOH . C 3 HOH A 123 523 67 HOH HOH . C 3 HOH A 124 524 133 HOH HOH . C 3 HOH A 125 525 77 HOH HOH . C 3 HOH A 126 526 62 HOH HOH . C 3 HOH A 127 527 178 HOH HOH . C 3 HOH A 128 528 187 HOH HOH . C 3 HOH A 129 529 42 HOH HOH . C 3 HOH A 130 530 115 HOH HOH . C 3 HOH A 131 531 86 HOH HOH . C 3 HOH A 132 532 158 HOH HOH . C 3 HOH A 133 533 182 HOH HOH . C 3 HOH A 134 534 155 HOH HOH . C 3 HOH A 135 535 169 HOH HOH . C 3 HOH A 136 536 146 HOH HOH . C 3 HOH A 137 537 119 HOH HOH . C 3 HOH A 138 538 159 HOH HOH . C 3 HOH A 139 539 114 HOH HOH . C 3 HOH A 140 540 183 HOH HOH . C 3 HOH A 141 541 41 HOH HOH . C 3 HOH A 142 542 102 HOH HOH . C 3 HOH A 143 543 180 HOH HOH . C 3 HOH A 144 544 31 HOH HOH . C 3 HOH A 145 545 168 HOH HOH . C 3 HOH A 146 546 170 HOH HOH . C 3 HOH A 147 547 166 HOH HOH . C 3 HOH A 148 548 139 HOH HOH . C 3 HOH A 149 549 164 HOH HOH . C 3 HOH A 150 550 44 HOH HOH . C 3 HOH A 151 551 137 HOH HOH . C 3 HOH A 152 552 45 HOH HOH . C 3 HOH A 153 553 104 HOH HOH . C 3 HOH A 154 554 148 HOH HOH . C 3 HOH A 155 555 175 HOH HOH . C 3 HOH A 156 556 132 HOH HOH . C 3 HOH A 157 557 156 HOH HOH . C 3 HOH A 158 558 117 HOH HOH . C 3 HOH A 159 559 173 HOH HOH . C 3 HOH A 160 560 74 HOH HOH . C 3 HOH A 161 561 185 HOH HOH . C 3 HOH A 162 562 105 HOH HOH . C 3 HOH A 163 563 136 HOH HOH . C 3 HOH A 164 564 154 HOH HOH . C 3 HOH A 165 565 128 HOH HOH . C 3 HOH A 166 566 147 HOH HOH . C 3 HOH A 167 567 161 HOH HOH . C 3 HOH A 168 568 68 HOH HOH . C 3 HOH A 169 569 153 HOH HOH . C 3 HOH A 170 570 73 HOH HOH . C 3 HOH A 171 571 152 HOH HOH . C 3 HOH A 172 572 129 HOH HOH . C 3 HOH A 173 573 69 HOH HOH . C 3 HOH A 174 574 43 HOH HOH . C 3 HOH A 175 575 64 HOH HOH . C 3 HOH A 176 576 46 HOH HOH . C 3 HOH A 177 577 91 HOH HOH . C 3 HOH A 178 578 48 HOH HOH . C 3 HOH A 179 579 179 HOH HOH . C 3 HOH A 180 580 90 HOH HOH . C 3 HOH A 181 581 162 HOH HOH . C 3 HOH A 182 582 125 HOH HOH . C 3 HOH A 183 583 88 HOH HOH . C 3 HOH A 184 584 143 HOH HOH . C 3 HOH A 185 585 107 HOH HOH . C 3 HOH A 186 586 79 HOH HOH . C 3 HOH A 187 587 56 HOH HOH . C 3 HOH A 188 588 151 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C8 AIX . . . B 2 -8.092 1.91 15.27 0.85 34.79 ? C8 AIX 301 A 1 HETATM 2 C C5 AIX . . . B 2 -7.706 1.82 17.623 0.85 38.98 ? C5 AIX 301 A 1 HETATM 3 C C6 AIX . . . B 2 -4.876 -1.613 16.231 0.85 29.78 ? C6 AIX 301 A 1 HETATM 4 N N1 AIX . . . B 2 -4.917 0.771 19.104 0.85 24.1 ? N1 AIX 301 A 1 HETATM 5 C C2 AIX . . . B 2 -2.675 -1.329 15.466 0.85 17.33 ? C2 AIX 301 A 1 HETATM 6 N N3 AIX . . . B 2 -3.093 -1.719 17.989 0.85 20.83 ? N3 AIX 301 A 1 HETATM 7 C C4 AIX . . . B 2 -6.993 2.333 18.832 0.85 36.85 ? C4 AIX 301 A 1 HETATM 8 C C1 AIX . . . B 2 -5.75 -0.748 15.272 0.85 28.44 ? C1 AIX 301 A 1 HETATM 9 C C3 AIX . . . B 2 -6.272 1.139 19.542 0.85 29.38 ? C3 AIX 301 A 1 HETATM 10 C C7 AIX . . . B 2 -7.438 2.375 16.389 0.85 36.77 ? C7 AIX 301 A 1 HETATM 11 C C9 AIX . . . B 2 -9.017 0.878 15.386 0.85 46.53 ? C9 AIX 301 A 1 HETATM 12 C C10 AIX . . . B 2 -9.285 0.318 16.63 0.85 46.27 ? C10 AIX 301 A 1 HETATM 13 C C11 AIX . . . B 2 -8.634 0.783 17.747 0.85 41.58 ? C11 AIX 301 A 1 HETATM 14 C C12 AIX . . . B 2 -3.613 -1.023 16.457 0.85 21.17 ? C12 AIX 301 A 1 HETATM 15 C C13 AIX . . . B 2 -4.253 -1.635 18.846 0.85 29.11 ? C13 AIX 301 A 1 HETATM 16 C C14 AIX . . . B 2 -4.187 -0.301 19.713 0.85 24.34 ? C14 AIX 301 A 1 HETATM 17 C C15 AIX . . . B 2 -2.747 0.138 19.89 0.85 22.95 ? C15 AIX 301 A 1 HETATM 18 C C16 AIX . . . B 2 -4.77 -3.025 15.677 0.85 27.99 ? C16 AIX 301 A 1 HETATM 19 N N2 AIX . . . B 2 -7.94 2.914 19.754 0.85 36.27 ? N2 AIX 301 A 1 HETATM 20 O O1 AIX . . . B 2 -1.725 -2.137 15.722 0.85 21.04 ? O1 AIX 301 A 1 HETATM 21 O O2 AIX . . . B 2 -2.756 -0.799 14.333 0.85 32.31 -1 O2 AIX 301 A 1 HETATM 22 O O3 AIX . . . B 2 -6.828 0.536 20.424 0.85 24.72 ? O3 AIX 301 A 1 HETATM 23 O O4 AIX . . . B 2 -2.168 0.738 19.024 0.85 16.48 ? O4 AIX 301 A 1 HETATM 24 S S1 AIX . . . B 2 -5.561 -1.663 17.808 0.85 41.94 ? S1 AIX 301 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 24 #