data_8B2W # _model_server_result.job_id vL1Djez3ehEMbva-ZQ4WJA _model_server_result.datetime_utc '2024-11-27 20:10:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8b2w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 8B2W # _exptl.entry_id 8B2W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 351.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R,4S)-2-[(1R)-1-{[(2R)-2-amino-2-phenylacetyl]amino}-2-oxoethyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8B2W _cell.length_a 41.812 _cell.length_b 41.812 _cell.length_c 232.864 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8B2W _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall 'P 32 2"' _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id OG _struct_conn.ptnr1_label_comp_id SER _struct_conn.ptnr1_label_seq_id 43 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id SER _struct_conn.ptnr1_auth_seq_id 70 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id AIX _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id AIX _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.407 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C16 H21 N3 O4 S' _chem_comp.formula_weight 351.421 _chem_comp.id AIX _chem_comp.mon_nstd_flag . _chem_comp.name '(2R,4S)-2-[(1R)-1-{[(2R)-2-amino-2-phenylacetyl]amino}-2-oxoethyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'AMPICILLIN (open form)' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C9 C8 AIX doub 1 n y C8 C7 AIX sing 2 n y C8 H8 AIX sing 3 n n C7 C5 AIX doub 4 n y C11 C5 AIX sing 5 n y C5 C4 AIX sing 6 n n C1 C6 AIX sing 7 n n C16 C6 AIX sing 8 n n C6 C12 AIX sing 9 n n C6 S1 AIX sing 10 n n C14 N1 AIX sing 11 n n N1 C3 AIX sing 12 n n N1 HN1 AIX sing 13 n n O2 C2 AIX doub 14 n n O1 C2 AIX sing 15 n n C2 C12 AIX sing 16 n n C12 N3 AIX sing 17 n n N3 C13 AIX sing 18 n n N3 HN3 AIX sing 19 n n C3 C4 AIX sing 20 n n C4 N2 AIX sing 21 n n C4 H4 AIX sing 22 n n C1 H1 AIX sing 23 n n C1 H1A AIX sing 24 n n C1 H1B AIX sing 25 n n C3 O3 AIX doub 26 n n C7 H7 AIX sing 27 n n C9 C10 AIX sing 28 n y C9 H9 AIX sing 29 n n C10 C11 AIX doub 30 n y C10 H10 AIX sing 31 n n C11 H11 AIX sing 32 n n C12 H12 AIX sing 33 n n S1 C13 AIX sing 34 n n C13 C14 AIX sing 35 n n C13 H13 AIX sing 36 n n C15 C14 AIX sing 37 n n C14 H14 AIX sing 38 n n O4 C15 AIX doub 39 n n C15 H15 AIX sing 40 n n C16 H16 AIX sing 41 n n C16 H16A AIX sing 42 n n C16 H16B AIX sing 43 n n N2 HN2 AIX sing 44 n n N2 HN2A AIX sing 45 n n O1 HO1 AIX sing 46 n n # _atom_sites.entry_id 8B2W _atom_sites.fract_transf_matrix[1][1] 0.023917 _atom_sites.fract_transf_matrix[1][2] 0.013808 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.027616 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004294 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AIX A 1 301 301 AIX AIX . C 3 HOH A 1 401 88 HOH HOH . C 3 HOH A 2 402 78 HOH HOH . C 3 HOH A 3 403 160 HOH HOH . C 3 HOH A 4 404 44 HOH HOH . C 3 HOH A 5 405 67 HOH HOH . C 3 HOH A 6 406 71 HOH HOH . C 3 HOH A 7 407 104 HOH HOH . C 3 HOH A 8 408 150 HOH HOH . C 3 HOH A 9 409 92 HOH HOH . C 3 HOH A 10 410 167 HOH HOH . C 3 HOH A 11 411 166 HOH HOH . C 3 HOH A 12 412 26 HOH HOH . C 3 HOH A 13 413 122 HOH HOH . C 3 HOH A 14 414 16 HOH HOH . C 3 HOH A 15 415 15 HOH HOH . C 3 HOH A 16 416 18 HOH HOH . C 3 HOH A 17 417 52 HOH HOH . C 3 HOH A 18 418 10 HOH HOH . C 3 HOH A 19 419 3 HOH HOH . C 3 HOH A 20 420 111 HOH HOH . C 3 HOH A 21 421 158 HOH HOH . C 3 HOH A 22 422 137 HOH HOH . C 3 HOH A 23 423 145 HOH HOH . C 3 HOH A 24 424 35 HOH HOH . C 3 HOH A 25 425 5 HOH HOH . C 3 HOH A 26 426 127 HOH HOH . C 3 HOH A 27 427 138 HOH HOH . C 3 HOH A 28 428 12 HOH HOH . C 3 HOH A 29 429 19 HOH HOH . C 3 HOH A 30 430 47 HOH HOH . C 3 HOH A 31 431 28 HOH HOH . C 3 HOH A 32 432 14 HOH HOH . C 3 HOH A 33 433 115 HOH HOH . C 3 HOH A 34 434 114 HOH HOH . C 3 HOH A 35 435 8 HOH HOH . C 3 HOH A 36 436 32 HOH HOH . C 3 HOH A 37 437 31 HOH HOH . C 3 HOH A 38 438 29 HOH HOH . C 3 HOH A 39 439 107 HOH HOH . C 3 HOH A 40 440 38 HOH HOH . C 3 HOH A 41 441 43 HOH HOH . C 3 HOH A 42 442 41 HOH HOH . C 3 HOH A 43 443 30 HOH HOH . C 3 HOH A 44 444 68 HOH HOH . C 3 HOH A 45 445 96 HOH HOH . C 3 HOH A 46 446 22 HOH HOH . C 3 HOH A 47 447 21 HOH HOH . C 3 HOH A 48 448 162 HOH HOH . C 3 HOH A 49 449 48 HOH HOH . C 3 HOH A 50 450 1 HOH HOH . C 3 HOH A 51 451 40 HOH HOH . C 3 HOH A 52 452 2 HOH HOH . C 3 HOH A 53 453 20 HOH HOH . C 3 HOH A 54 454 113 HOH HOH . C 3 HOH A 55 455 75 HOH HOH . C 3 HOH A 56 456 84 HOH HOH . C 3 HOH A 57 457 4 HOH HOH . C 3 HOH A 58 458 46 HOH HOH . C 3 HOH A 59 459 89 HOH HOH . C 3 HOH A 60 460 45 HOH HOH . C 3 HOH A 61 461 132 HOH HOH . C 3 HOH A 62 462 97 HOH HOH . C 3 HOH A 63 463 27 HOH HOH . C 3 HOH A 64 464 6 HOH HOH . C 3 HOH A 65 465 11 HOH HOH . C 3 HOH A 66 466 64 HOH HOH . C 3 HOH A 67 467 109 HOH HOH . C 3 HOH A 68 468 37 HOH HOH . C 3 HOH A 69 469 119 HOH HOH . C 3 HOH A 70 470 13 HOH HOH . C 3 HOH A 71 471 51 HOH HOH . C 3 HOH A 72 472 24 HOH HOH . C 3 HOH A 73 473 106 HOH HOH . C 3 HOH A 74 474 102 HOH HOH . C 3 HOH A 75 475 17 HOH HOH . C 3 HOH A 76 476 54 HOH HOH . C 3 HOH A 77 477 118 HOH HOH . C 3 HOH A 78 478 120 HOH HOH . C 3 HOH A 79 479 123 HOH HOH . C 3 HOH A 80 480 25 HOH HOH . C 3 HOH A 81 481 55 HOH HOH . C 3 HOH A 82 482 126 HOH HOH . C 3 HOH A 83 483 7 HOH HOH . C 3 HOH A 84 484 42 HOH HOH . C 3 HOH A 85 485 23 HOH HOH . C 3 HOH A 86 486 39 HOH HOH . C 3 HOH A 87 487 66 HOH HOH . C 3 HOH A 88 488 79 HOH HOH . C 3 HOH A 89 489 99 HOH HOH . C 3 HOH A 90 490 170 HOH HOH . C 3 HOH A 91 491 152 HOH HOH . C 3 HOH A 92 492 60 HOH HOH . C 3 HOH A 93 493 100 HOH HOH . C 3 HOH A 94 494 98 HOH HOH . C 3 HOH A 95 495 156 HOH HOH . C 3 HOH A 96 496 105 HOH HOH . C 3 HOH A 97 497 130 HOH HOH . C 3 HOH A 98 498 169 HOH HOH . C 3 HOH A 99 499 86 HOH HOH . C 3 HOH A 100 500 74 HOH HOH . C 3 HOH A 101 501 121 HOH HOH . C 3 HOH A 102 502 53 HOH HOH . C 3 HOH A 103 503 125 HOH HOH . C 3 HOH A 104 504 139 HOH HOH . C 3 HOH A 105 505 146 HOH HOH . C 3 HOH A 106 506 83 HOH HOH . C 3 HOH A 107 507 63 HOH HOH . C 3 HOH A 108 508 58 HOH HOH . C 3 HOH A 109 509 154 HOH HOH . C 3 HOH A 110 510 110 HOH HOH . C 3 HOH A 111 511 87 HOH HOH . C 3 HOH A 112 512 56 HOH HOH . C 3 HOH A 113 513 101 HOH HOH . C 3 HOH A 114 514 91 HOH HOH . C 3 HOH A 115 515 136 HOH HOH . C 3 HOH A 116 516 159 HOH HOH . C 3 HOH A 117 517 153 HOH HOH . C 3 HOH A 118 518 77 HOH HOH . C 3 HOH A 119 519 133 HOH HOH . C 3 HOH A 120 520 124 HOH HOH . C 3 HOH A 121 521 117 HOH HOH . C 3 HOH A 122 522 59 HOH HOH . C 3 HOH A 123 523 80 HOH HOH . C 3 HOH A 124 524 131 HOH HOH . C 3 HOH A 125 525 112 HOH HOH . C 3 HOH A 126 526 108 HOH HOH . C 3 HOH A 127 527 76 HOH HOH . C 3 HOH A 128 528 155 HOH HOH . C 3 HOH A 129 529 142 HOH HOH . C 3 HOH A 130 530 165 HOH HOH . C 3 HOH A 131 531 94 HOH HOH . C 3 HOH A 132 532 65 HOH HOH . C 3 HOH A 133 533 144 HOH HOH . C 3 HOH A 134 534 157 HOH HOH . C 3 HOH A 135 535 149 HOH HOH . C 3 HOH A 136 536 62 HOH HOH . C 3 HOH A 137 537 36 HOH HOH . C 3 HOH A 138 538 85 HOH HOH . C 3 HOH A 139 539 116 HOH HOH . C 3 HOH A 140 540 148 HOH HOH . C 3 HOH A 141 541 129 HOH HOH . C 3 HOH A 142 542 34 HOH HOH . C 3 HOH A 143 543 57 HOH HOH . C 3 HOH A 144 544 82 HOH HOH . C 3 HOH A 145 545 50 HOH HOH . C 3 HOH A 146 546 93 HOH HOH . C 3 HOH A 147 547 134 HOH HOH . C 3 HOH A 148 548 140 HOH HOH . C 3 HOH A 149 549 151 HOH HOH . C 3 HOH A 150 550 143 HOH HOH . C 3 HOH A 151 551 147 HOH HOH . C 3 HOH A 152 552 103 HOH HOH . C 3 HOH A 153 553 49 HOH HOH . C 3 HOH A 154 554 69 HOH HOH . C 3 HOH A 155 555 141 HOH HOH . C 3 HOH A 156 556 161 HOH HOH . C 3 HOH A 157 557 135 HOH HOH . C 3 HOH A 158 558 171 HOH HOH . C 3 HOH A 159 559 9 HOH HOH . C 3 HOH A 160 560 81 HOH HOH . C 3 HOH A 161 561 73 HOH HOH . C 3 HOH A 162 562 90 HOH HOH . C 3 HOH A 163 563 70 HOH HOH . C 3 HOH A 164 564 72 HOH HOH . C 3 HOH A 165 565 33 HOH HOH . C 3 HOH A 166 566 168 HOH HOH . C 3 HOH A 167 567 61 HOH HOH . C 3 HOH A 168 568 95 HOH HOH . C 3 HOH A 169 569 128 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C8 AIX . . . B 2 -7.674 2.181 15.212 0.77 29.12 ? C8 AIX 301 A 1 HETATM 2 C C5 AIX . . . B 2 -7.585 1.991 17.591 0.77 30.51 ? C5 AIX 301 A 1 HETATM 3 C C6 AIX . . . B 2 -4.719 -1.563 15.995 0.77 26.92 ? C6 AIX 301 A 1 HETATM 4 N N1 AIX . . . B 2 -4.999 0.838 18.943 0.77 23.11 ? N1 AIX 301 A 1 HETATM 5 C C2 AIX . . . B 2 -2.44 -1.454 15.404 0.77 18.51 ? C2 AIX 301 A 1 HETATM 6 N N3 AIX . . . B 2 -3.092 -1.649 17.895 0.77 18.45 ? N3 AIX 301 A 1 HETATM 7 C C4 AIX . . . B 2 -7.068 2.467 18.91 0.77 28.97 ? C4 AIX 301 A 1 HETATM 8 C C1 AIX . . . B 2 -4.639 -3.057 15.561 0.77 28.25 ? C1 AIX 301 A 1 HETATM 9 C C3 AIX . . . B 2 -6.25 1.304 19.567 0.77 26.11 ? C3 AIX 301 A 1 HETATM 10 C C7 AIX . . . B 2 -7.199 2.625 16.426 0.77 28.81 ? C7 AIX 301 A 1 HETATM 11 C C9 AIX . . . B 2 -8.539 1.094 15.16 0.77 38.83 ? C9 AIX 301 A 1 HETATM 12 C C10 AIX . . . B 2 -8.925 0.454 16.33 0.77 40.27 ? C10 AIX 301 A 1 HETATM 13 C C11 AIX . . . B 2 -8.452 0.897 17.54 0.77 34.43 ? C11 AIX 301 A 1 HETATM 14 C C12 AIX . . . B 2 -3.446 -1.028 16.284 0.77 21.12 ? C12 AIX 301 A 1 HETATM 15 C C13 AIX . . . B 2 -4.32 -1.536 18.644 0.77 22.16 ? C13 AIX 301 A 1 HETATM 16 C C14 AIX . . . B 2 -4.25 -0.229 19.547 0.77 24.26 ? C14 AIX 301 A 1 HETATM 17 C C15 AIX . . . B 2 -2.803 0.182 19.746 0.77 19.36 ? C15 AIX 301 A 1 HETATM 18 C C16 AIX . . . B 2 -5.453 -0.754 14.938 0.77 26.13 ? C16 AIX 301 A 1 HETATM 19 N N2 AIX . . . B 2 -8.175 2.819 19.769 0.77 31.83 ? N2 AIX 301 A 1 HETATM 20 O O1 AIX . . . B 2 -2.379 -0.999 14.214 0.77 24.2 ? O1 AIX 301 A 1 HETATM 21 O O2 AIX . . . B 2 -1.577 -2.28 15.801 0.77 21.89 ? O2 AIX 301 A 1 HETATM 22 O O3 AIX . . . B 2 -6.649 0.79 20.579 0.77 25 ? O3 AIX 301 A 1 HETATM 23 O O4 AIX . . . B 2 -2.175 0.715 18.87 0.77 16.94 ? O4 AIX 301 A 1 HETATM 24 S S1 AIX . . . B 2 -5.531 -1.441 17.504 0.77 35.41 ? S1 AIX 301 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 24 #