data_8B3C
#
_model_server_result.job_id            m9TKK0TlzyrmAGnYQaeQSA 
_model_server_result.datetime_utc      '2025-01-11 02:50:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8b3c 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":401}' 
#
_entry.id    8B3C 
#
_exptl.entry_id    8B3C 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              288.252 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2S)-2-(3,4-DIHYDROXYPHENYL)-5,7-DIHYDROXY-2,3-DIHYDRO-4H-CHROMEN-4-ONE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8B3C 
_cell.length_a            77.884 
_cell.length_b            97.817 
_cell.length_c            137.928 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8B3C 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
_chem_comp.formula           'C15 H12 O6' 
_chem_comp.formula_weight    288.252 
_chem_comp.id                ERD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2S)-2-(3,4-DIHYDROXYPHENYL)-5,7-DIHYDROXY-2,3-DIHYDRO-4H-CHROMEN-4-ONE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O13 C9 ERD doub 169 n n 
C9 C3 ERD sing 170 n n 
C9 C10 ERD sing 171 n n 
C10 C11 ERD sing 172 n n 
C10 H101 ERD sing 173 n n 
C10 H102 ERD sing 174 n n 
C11 O12 ERD sing 175 n n 
C11 C14 ERD sing 176 n n 
C11 H11 ERD sing 177 n n 
C14 C15 ERD doub 178 n y 
C14 C19 ERD sing 179 n y 
C15 C16 ERD sing 180 n y 
C15 H15 ERD sing 181 n n 
C16 C17 ERD doub 182 n y 
C16 H16 ERD sing 183 n n 
C17 C18 ERD sing 184 n y 
C17 O24 ERD sing 185 n n 
O24 HO24 ERD sing 186 n n 
C18 C19 ERD doub 187 n y 
C18 O23 ERD sing 188 n n 
O23 HO23 ERD sing 189 n n 
C19 H19 ERD sing 190 n n 
O12 C4 ERD sing 191 n n 
C4 C3 ERD doub 192 n y 
C4 C5 ERD sing 193 n y 
C3 C2 ERD sing 194 n y 
C5 C6 ERD doub 195 n y 
C5 H5 ERD sing 196 n n 
C6 C1 ERD sing 197 n y 
C6 O29 ERD sing 198 n n 
O29 HO29 ERD sing 199 n n 
C1 C2 ERD doub 200 n y 
C1 H1 ERD sing 201 n n 
C2 O30 ERD sing 202 n n 
O30 HO30 ERD sing 203 n n 
#
_atom_sites.entry_id                     8B3C 
_atom_sites.fract_transf_matrix[1][1]    0.01284 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010223 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00725 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ERD A 1 401 484 ERD ERD . 
D 3 COA A 1 402 485 COA COA . 
E 2 ERD B 1 401 484 ERD ERD . 
F 3 COA B 1 402 485 COA COA . 
G 4 HOH A 1 501 154 HOH HOH . 
G 4 HOH A 2 502 159 HOH HOH . 
G 4 HOH A 3 503 39 HOH HOH . 
G 4 HOH A 4 504 158 HOH HOH . 
G 4 HOH A 5 505 152 HOH HOH . 
G 4 HOH A 6 506 50 HOH HOH . 
G 4 HOH A 7 507 150 HOH HOH . 
G 4 HOH A 8 508 124 HOH HOH . 
G 4 HOH A 9 509 41 HOH HOH . 
G 4 HOH A 10 510 187 HOH HOH . 
G 4 HOH A 11 511 146 HOH HOH . 
G 4 HOH A 12 512 185 HOH HOH . 
G 4 HOH A 13 513 19 HOH HOH . 
G 4 HOH A 14 514 6 HOH HOH . 
G 4 HOH A 15 515 171 HOH HOH . 
G 4 HOH A 16 516 91 HOH HOH . 
G 4 HOH A 17 517 17 HOH HOH . 
G 4 HOH A 18 518 93 HOH HOH . 
G 4 HOH A 19 519 90 HOH HOH . 
G 4 HOH A 20 520 34 HOH HOH . 
G 4 HOH A 21 521 156 HOH HOH . 
G 4 HOH A 22 522 112 HOH HOH . 
G 4 HOH A 23 523 136 HOH HOH . 
G 4 HOH A 24 524 71 HOH HOH . 
G 4 HOH A 25 525 157 HOH HOH . 
G 4 HOH A 26 526 172 HOH HOH . 
G 4 HOH A 27 527 72 HOH HOH . 
G 4 HOH A 28 528 104 HOH HOH . 
G 4 HOH A 29 529 24 HOH HOH . 
G 4 HOH A 30 530 151 HOH HOH . 
G 4 HOH A 31 531 5 HOH HOH . 
G 4 HOH A 32 532 174 HOH HOH . 
G 4 HOH A 33 533 21 HOH HOH . 
G 4 HOH A 34 534 76 HOH HOH . 
G 4 HOH A 35 535 13 HOH HOH . 
G 4 HOH A 36 536 64 HOH HOH . 
G 4 HOH A 37 537 143 HOH HOH . 
G 4 HOH A 38 538 14 HOH HOH . 
G 4 HOH A 39 539 140 HOH HOH . 
G 4 HOH A 40 540 52 HOH HOH . 
G 4 HOH A 41 541 155 HOH HOH . 
G 4 HOH A 42 542 142 HOH HOH . 
G 4 HOH A 43 543 7 HOH HOH . 
G 4 HOH A 44 544 73 HOH HOH . 
G 4 HOH A 45 545 160 HOH HOH . 
G 4 HOH A 46 546 54 HOH HOH . 
G 4 HOH A 47 547 58 HOH HOH . 
G 4 HOH A 48 548 169 HOH HOH . 
G 4 HOH A 49 549 36 HOH HOH . 
G 4 HOH A 50 550 177 HOH HOH . 
G 4 HOH A 51 551 105 HOH HOH . 
G 4 HOH A 52 552 132 HOH HOH . 
G 4 HOH A 53 553 118 HOH HOH . 
G 4 HOH A 54 554 85 HOH HOH . 
G 4 HOH A 55 555 65 HOH HOH . 
G 4 HOH A 56 556 67 HOH HOH . 
G 4 HOH A 57 557 46 HOH HOH . 
G 4 HOH A 58 558 75 HOH HOH . 
G 4 HOH A 59 559 40 HOH HOH . 
G 4 HOH A 60 560 186 HOH HOH . 
G 4 HOH A 61 561 126 HOH HOH . 
G 4 HOH A 62 562 26 HOH HOH . 
G 4 HOH A 63 563 92 HOH HOH . 
G 4 HOH A 64 564 68 HOH HOH . 
G 4 HOH A 65 565 101 HOH HOH . 
G 4 HOH A 66 566 61 HOH HOH . 
G 4 HOH A 67 567 107 HOH HOH . 
G 4 HOH A 68 568 191 HOH HOH . 
G 4 HOH A 69 569 15 HOH HOH . 
G 4 HOH A 70 570 70 HOH HOH . 
G 4 HOH A 71 571 198 HOH HOH . 
G 4 HOH A 72 572 197 HOH HOH . 
G 4 HOH A 73 573 179 HOH HOH . 
G 4 HOH A 74 574 182 HOH HOH . 
G 4 HOH A 75 575 100 HOH HOH . 
G 4 HOH A 76 576 42 HOH HOH . 
G 4 HOH A 77 577 2 HOH HOH . 
G 4 HOH A 78 578 134 HOH HOH . 
G 4 HOH A 79 579 111 HOH HOH . 
G 4 HOH A 80 580 196 HOH HOH . 
G 4 HOH A 81 581 121 HOH HOH . 
G 4 HOH A 82 582 183 HOH HOH . 
G 4 HOH A 83 583 192 HOH HOH . 
G 4 HOH A 84 584 48 HOH HOH . 
G 4 HOH A 85 585 94 HOH HOH . 
G 4 HOH A 86 586 115 HOH HOH . 
G 4 HOH A 87 587 133 HOH HOH . 
H 4 HOH B 1 501 162 HOH HOH . 
H 4 HOH B 2 502 96 HOH HOH . 
H 4 HOH B 3 503 119 HOH HOH . 
H 4 HOH B 4 504 80 HOH HOH . 
H 4 HOH B 5 505 127 HOH HOH . 
H 4 HOH B 6 506 81 HOH HOH . 
H 4 HOH B 7 507 147 HOH HOH . 
H 4 HOH B 8 508 128 HOH HOH . 
H 4 HOH B 9 509 123 HOH HOH . 
H 4 HOH B 10 510 173 HOH HOH . 
H 4 HOH B 11 511 35 HOH HOH . 
H 4 HOH B 12 512 29 HOH HOH . 
H 4 HOH B 13 513 131 HOH HOH . 
H 4 HOH B 14 514 137 HOH HOH . 
H 4 HOH B 15 515 175 HOH HOH . 
H 4 HOH B 16 516 25 HOH HOH . 
H 4 HOH B 17 517 74 HOH HOH . 
H 4 HOH B 18 518 51 HOH HOH . 
H 4 HOH B 19 519 99 HOH HOH . 
H 4 HOH B 20 520 10 HOH HOH . 
H 4 HOH B 21 521 56 HOH HOH . 
H 4 HOH B 22 522 27 HOH HOH . 
H 4 HOH B 23 523 178 HOH HOH . 
H 4 HOH B 24 524 116 HOH HOH . 
H 4 HOH B 25 525 37 HOH HOH . 
H 4 HOH B 26 526 82 HOH HOH . 
H 4 HOH B 27 527 98 HOH HOH . 
H 4 HOH B 28 528 79 HOH HOH . 
H 4 HOH B 29 529 84 HOH HOH . 
H 4 HOH B 30 530 193 HOH HOH . 
H 4 HOH B 31 531 59 HOH HOH . 
H 4 HOH B 32 532 60 HOH HOH . 
H 4 HOH B 33 533 145 HOH HOH . 
H 4 HOH B 34 534 45 HOH HOH . 
H 4 HOH B 35 535 114 HOH HOH . 
H 4 HOH B 36 536 106 HOH HOH . 
H 4 HOH B 37 537 88 HOH HOH . 
H 4 HOH B 38 538 97 HOH HOH . 
H 4 HOH B 39 539 86 HOH HOH . 
H 4 HOH B 40 540 129 HOH HOH . 
H 4 HOH B 41 541 195 HOH HOH . 
H 4 HOH B 42 542 139 HOH HOH . 
H 4 HOH B 43 543 109 HOH HOH . 
H 4 HOH B 44 544 57 HOH HOH . 
H 4 HOH B 45 545 69 HOH HOH . 
H 4 HOH B 46 546 83 HOH HOH . 
H 4 HOH B 47 547 55 HOH HOH . 
H 4 HOH B 48 548 63 HOH HOH . 
H 4 HOH B 49 549 47 HOH HOH . 
H 4 HOH B 50 550 144 HOH HOH . 
H 4 HOH B 51 551 22 HOH HOH . 
H 4 HOH B 52 552 125 HOH HOH . 
H 4 HOH B 53 553 120 HOH HOH . 
H 4 HOH B 54 554 28 HOH HOH . 
H 4 HOH B 55 555 87 HOH HOH . 
H 4 HOH B 56 556 31 HOH HOH . 
H 4 HOH B 57 557 38 HOH HOH . 
H 4 HOH B 58 558 53 HOH HOH . 
H 4 HOH B 59 559 49 HOH HOH . 
H 4 HOH B 60 560 108 HOH HOH . 
H 4 HOH B 61 561 4 HOH HOH . 
H 4 HOH B 62 562 110 HOH HOH . 
H 4 HOH B 63 563 8 HOH HOH . 
H 4 HOH B 64 564 141 HOH HOH . 
H 4 HOH B 65 565 62 HOH HOH . 
H 4 HOH B 66 566 16 HOH HOH . 
H 4 HOH B 67 567 149 HOH HOH . 
H 4 HOH B 68 568 1 HOH HOH . 
H 4 HOH B 69 569 117 HOH HOH . 
H 4 HOH B 70 570 3 HOH HOH . 
H 4 HOH B 71 571 66 HOH HOH . 
H 4 HOH B 72 572 176 HOH HOH . 
H 4 HOH B 73 573 190 HOH HOH . 
H 4 HOH B 74 574 12 HOH HOH . 
H 4 HOH B 75 575 89 HOH HOH . 
H 4 HOH B 76 576 135 HOH HOH . 
H 4 HOH B 77 577 194 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O13 ERD . . . E 2 -6.683 -21.406 15.339 1 78.43 0 O13 ERD 401 B 1 
HETATM 2 C C9 ERD . . . E 2 -6.356 -20.21 15.2 1 91.23 0 C9 ERD 401 B 1 
HETATM 3 C C10 ERD . . . E 2 -4.928 -19.748 15.433 1 86.94 0 C10 ERD 401 B 1 
HETATM 4 C C11 ERD . . . E 2 -4.942 -18.29 15.834 1 84.22 0 C11 ERD 401 B 1 
HETATM 5 C C14 ERD . . . E 2 -3.638 -17.619 16.128 1 72.31 0 C14 ERD 401 B 1 
HETATM 6 C C15 ERD . . . E 2 -3.019 -17.763 17.357 1 72.55 0 C15 ERD 401 B 1 
HETATM 7 C C16 ERD . . . E 2 -1.844 -17.067 17.635 1 69.12 0 C16 ERD 401 B 1 
HETATM 8 C C17 ERD . . . E 2 -1.304 -16.201 16.691 1 81.68 0 C17 ERD 401 B 1 
HETATM 9 O O24 ERD . . . E 2 -0.144 -15.522 16.931 1 79.62 0 O24 ERD 401 B 1 
HETATM 10 C C18 ERD . . . E 2 -1.94 -16.025 15.456 1 78.76 0 C18 ERD 401 B 1 
HETATM 11 O O23 ERD . . . E 2 -1.435 -15.171 14.495 1 54.04 0 O23 ERD 401 B 1 
HETATM 12 C C19 ERD . . . E 2 -3.108 -16.725 15.194 1 79.29 0 C19 ERD 401 B 1 
HETATM 13 O O12 ERD . . . E 2 -5.548 -17.519 14.764 1 88.19 0 O12 ERD 401 B 1 
HETATM 14 C C4 ERD . . . E 2 -6.835 -17.874 14.475 1 89.24 0 C4 ERD 401 B 1 
HETATM 15 C C3 ERD . . . E 2 -7.277 -19.18 14.696 1 89.01 0 C3 ERD 401 B 1 
HETATM 16 C C5 ERD . . . E 2 -7.641 -16.883 13.949 1 92.16 0 C5 ERD 401 B 1 
HETATM 17 C C6 ERD . . . E 2 -8.951 -17.181 13.613 1 88.4 0 C6 ERD 401 B 1 
HETATM 18 O O29 ERD . . . E 2 -9.729 -16.192 13.076 1 87.41 0 O29 ERD 401 B 1 
HETATM 19 C C1 ERD . . . E 2 -9.445 -18.463 13.825 1 86.76 0 C1 ERD 401 B 1 
HETATM 20 C C2 ERD . . . E 2 -8.627 -19.449 14.347 1 85.36 0 C2 ERD 401 B 1 
HETATM 21 O O30 ERD . . . E 2 -9.141 -20.694 14.533 1 74.26 0 O30 ERD 401 B 1 
HETATM 22 H H101 ERD . . . E 2 -4.517 -20.279 16.138 1 87.01 0 H101 ERD 401 B 1 
HETATM 23 H H102 ERD . . . E 2 -4.406 -19.859 14.619 1 87.22 0 H102 ERD 401 B 1 
HETATM 24 H H11 ERD . . . E 2 -5.524 -18.189 16.635 1 83.06 0 H11 ERD 401 B 1 
HETATM 25 H H15 ERD . . . E 2 -3.38 -18.343 18 1 71.95 0 H15 ERD 401 B 1 
HETATM 26 H H16 ERD . . . E 2 -1.404 -17.192 18.459 1 72.56 0 H16 ERD 401 B 1 
HETATM 27 H HO24 ERD . . . E 2 0.064 -15.046 16.269 0 80.31 0 HO24 ERD 401 B 1 
HETATM 28 H HO23 ERD . . . E 2 -1.955 -15.149 13.814 0 54.86 0 HO23 ERD 401 B 1 
HETATM 29 H H19 ERD . . . E 2 -3.542 -16.597 14.371 1 77.04 0 H19 ERD 401 B 1 
HETATM 30 H H5 ERD . . . E 2 -7.298 -16.021 13.81 1 90.05 0 H5 ERD 401 B 1 
HETATM 31 H HO29 ERD . . . E 2 -10.506 -16.552 12.853 0 85.57 0 HO29 ERD 401 B 1 
HETATM 32 H H1 ERD . . . E 2 -10.335 -18.665 13.597 1 86.86 0 H1 ERD 401 B 1 
HETATM 33 H HO30 ERD . . . E 2 -8.507 -21.212 14.877 0 75.18 0 HO30 ERD 401 B 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    30 
_model_server_stats.query_time_ms           520 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           33 
#