data_8B3M # _model_server_result.job_id BuL0jjhUnVlZFgkiiT_PaQ _model_server_result.datetime_utc '2024-11-24 05:45:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8b3m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 8B3M # _exptl.entry_id 8B3M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 267.26 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2S,5R)-1-formyl-5-[(sulfooxy)amino]piperidine-2-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8B3M _cell.length_a 41.85 _cell.length_b 41.85 _cell.length_c 232.85 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8B3M _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall 'P 32 2"' _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id OG _struct_conn.ptnr1_label_comp_id SER _struct_conn.ptnr1_label_seq_id 43 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id SER _struct_conn.ptnr1_auth_seq_id 70 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id CAN _struct_conn.ptnr2_label_comp_id NXL _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id NXL _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.396 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C7 H13 N3 O6 S' _chem_comp.formula_weight 267.26 _chem_comp.id NXL _chem_comp.mon_nstd_flag . _chem_comp.name (2S,5R)-1-formyl-5-[(sulfooxy)amino]piperidine-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'avibactam, bound form;NXL104, bound form' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag NAK CAO NXL sing 237 n n CAJ CAO NXL sing 238 n n CAJ N NXL sing 239 n n OAL SAR NXL sing 240 n n CAO CAH NXL sing 241 n n CAN N NXL sing 242 n n CAN OAC NXL doub 243 n n OAG SAR NXL doub 244 n n N CA NXL sing 245 n n SAR OAE NXL doub 246 n n SAR OAD NXL sing 247 n n O C NXL doub 248 n n CAH CB NXL sing 249 n n CA C NXL sing 250 n n CA CB NXL sing 251 n n C NAA NXL sing 252 n n NAK OAL NXL sing 253 n n CAN H1 NXL sing 254 n n CAJ H2 NXL sing 255 n n CAJ H3 NXL sing 256 n n CA H4 NXL sing 257 n n NAA H5 NXL sing 258 n n NAA H6 NXL sing 259 n n CB H7 NXL sing 260 n n CB H8 NXL sing 261 n n CAH H9 NXL sing 262 n n CAH H10 NXL sing 263 n n CAO H11 NXL sing 264 n n NAK H12 NXL sing 265 n n OAD H13 NXL sing 266 n n # _atom_sites.entry_id 8B3M _atom_sites.fract_transf_matrix[1][1] 0.023895 _atom_sites.fract_transf_matrix[1][2] 0.013796 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.027591 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004295 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NXL A 1 301 301 NXL NXL . C 3 HOH A 1 401 237 HOH HOH . C 3 HOH A 2 402 201 HOH HOH . C 3 HOH A 3 403 30 HOH HOH . C 3 HOH A 4 404 196 HOH HOH . C 3 HOH A 5 405 163 HOH HOH . C 3 HOH A 6 406 160 HOH HOH . C 3 HOH A 7 407 66 HOH HOH . C 3 HOH A 8 408 214 HOH HOH . C 3 HOH A 9 409 246 HOH HOH . C 3 HOH A 10 410 112 HOH HOH . C 3 HOH A 11 411 228 HOH HOH . C 3 HOH A 12 412 127 HOH HOH . C 3 HOH A 13 413 6 HOH HOH . C 3 HOH A 14 414 193 HOH HOH . C 3 HOH A 15 415 171 HOH HOH . C 3 HOH A 16 416 124 HOH HOH . C 3 HOH A 17 417 210 HOH HOH . C 3 HOH A 18 418 88 HOH HOH . C 3 HOH A 19 419 207 HOH HOH . C 3 HOH A 20 420 83 HOH HOH . C 3 HOH A 21 421 9 HOH HOH . C 3 HOH A 22 422 162 HOH HOH . C 3 HOH A 23 423 48 HOH HOH . C 3 HOH A 24 424 42 HOH HOH . C 3 HOH A 25 425 63 HOH HOH . C 3 HOH A 26 426 89 HOH HOH . C 3 HOH A 27 427 10 HOH HOH . C 3 HOH A 28 428 140 HOH HOH . C 3 HOH A 29 429 26 HOH HOH . C 3 HOH A 30 430 68 HOH HOH . C 3 HOH A 31 431 93 HOH HOH . C 3 HOH A 32 432 153 HOH HOH . C 3 HOH A 33 433 58 HOH HOH . C 3 HOH A 34 434 60 HOH HOH . C 3 HOH A 35 435 5 HOH HOH . C 3 HOH A 36 436 21 HOH HOH . C 3 HOH A 37 437 22 HOH HOH . C 3 HOH A 38 438 84 HOH HOH . C 3 HOH A 39 439 29 HOH HOH . C 3 HOH A 40 440 55 HOH HOH . C 3 HOH A 41 441 238 HOH HOH . C 3 HOH A 42 442 198 HOH HOH . C 3 HOH A 43 443 49 HOH HOH . C 3 HOH A 44 444 39 HOH HOH . C 3 HOH A 45 445 218 HOH HOH . C 3 HOH A 46 446 77 HOH HOH . C 3 HOH A 47 447 3 HOH HOH . C 3 HOH A 48 448 67 HOH HOH . C 3 HOH A 49 449 101 HOH HOH . C 3 HOH A 50 450 200 HOH HOH . C 3 HOH A 51 451 4 HOH HOH . C 3 HOH A 52 452 86 HOH HOH . C 3 HOH A 53 453 15 HOH HOH . C 3 HOH A 54 454 17 HOH HOH . C 3 HOH A 55 455 173 HOH HOH . C 3 HOH A 56 456 94 HOH HOH . C 3 HOH A 57 457 62 HOH HOH . C 3 HOH A 58 458 108 HOH HOH . C 3 HOH A 59 459 100 HOH HOH . C 3 HOH A 60 460 148 HOH HOH . C 3 HOH A 61 461 47 HOH HOH . C 3 HOH A 62 462 13 HOH HOH . C 3 HOH A 63 463 2 HOH HOH . C 3 HOH A 64 464 27 HOH HOH . C 3 HOH A 65 465 75 HOH HOH . C 3 HOH A 66 466 54 HOH HOH . C 3 HOH A 67 467 1 HOH HOH . C 3 HOH A 68 468 45 HOH HOH . C 3 HOH A 69 469 138 HOH HOH . C 3 HOH A 70 470 105 HOH HOH . C 3 HOH A 71 471 114 HOH HOH . C 3 HOH A 72 472 134 HOH HOH . C 3 HOH A 73 473 19 HOH HOH . C 3 HOH A 74 474 185 HOH HOH . C 3 HOH A 75 475 265 HOH HOH . C 3 HOH A 76 476 122 HOH HOH . C 3 HOH A 77 477 85 HOH HOH . C 3 HOH A 78 478 52 HOH HOH . C 3 HOH A 79 479 57 HOH HOH . C 3 HOH A 80 480 50 HOH HOH . C 3 HOH A 81 481 41 HOH HOH . C 3 HOH A 82 482 25 HOH HOH . C 3 HOH A 83 483 69 HOH HOH . C 3 HOH A 84 484 16 HOH HOH . C 3 HOH A 85 485 46 HOH HOH . C 3 HOH A 86 486 14 HOH HOH . C 3 HOH A 87 487 245 HOH HOH . C 3 HOH A 88 488 7 HOH HOH . C 3 HOH A 89 489 23 HOH HOH . C 3 HOH A 90 490 143 HOH HOH . C 3 HOH A 91 491 40 HOH HOH . C 3 HOH A 92 492 240 HOH HOH . C 3 HOH A 93 493 33 HOH HOH . C 3 HOH A 94 494 231 HOH HOH . C 3 HOH A 95 495 254 HOH HOH . C 3 HOH A 96 496 130 HOH HOH . C 3 HOH A 97 497 95 HOH HOH . C 3 HOH A 98 498 31 HOH HOH . C 3 HOH A 99 499 152 HOH HOH . C 3 HOH A 100 500 242 HOH HOH . C 3 HOH A 101 501 36 HOH HOH . C 3 HOH A 102 502 116 HOH HOH . C 3 HOH A 103 503 133 HOH HOH . C 3 HOH A 104 504 169 HOH HOH . C 3 HOH A 105 505 78 HOH HOH . C 3 HOH A 106 506 183 HOH HOH . C 3 HOH A 107 507 164 HOH HOH . C 3 HOH A 108 508 35 HOH HOH . C 3 HOH A 109 509 8 HOH HOH . C 3 HOH A 110 510 259 HOH HOH . C 3 HOH A 111 511 156 HOH HOH . C 3 HOH A 112 512 24 HOH HOH . C 3 HOH A 113 513 128 HOH HOH . C 3 HOH A 114 514 92 HOH HOH . C 3 HOH A 115 515 20 HOH HOH . C 3 HOH A 116 516 150 HOH HOH . C 3 HOH A 117 517 119 HOH HOH . C 3 HOH A 118 518 53 HOH HOH . C 3 HOH A 119 519 149 HOH HOH . C 3 HOH A 120 520 56 HOH HOH . C 3 HOH A 121 521 131 HOH HOH . C 3 HOH A 122 522 233 HOH HOH . C 3 HOH A 123 523 247 HOH HOH . C 3 HOH A 124 524 260 HOH HOH . C 3 HOH A 125 525 59 HOH HOH . C 3 HOH A 126 526 244 HOH HOH . C 3 HOH A 127 527 97 HOH HOH . C 3 HOH A 128 528 82 HOH HOH . C 3 HOH A 129 529 158 HOH HOH . C 3 HOH A 130 530 177 HOH HOH . C 3 HOH A 131 531 51 HOH HOH . C 3 HOH A 132 532 192 HOH HOH . C 3 HOH A 133 533 257 HOH HOH . C 3 HOH A 134 534 165 HOH HOH . C 3 HOH A 135 535 102 HOH HOH . C 3 HOH A 136 536 139 HOH HOH . C 3 HOH A 137 537 11 HOH HOH . C 3 HOH A 138 538 232 HOH HOH . C 3 HOH A 139 539 141 HOH HOH . C 3 HOH A 140 540 44 HOH HOH . C 3 HOH A 141 541 120 HOH HOH . C 3 HOH A 142 542 43 HOH HOH . C 3 HOH A 143 543 18 HOH HOH . C 3 HOH A 144 544 188 HOH HOH . C 3 HOH A 145 545 266 HOH HOH . C 3 HOH A 146 546 109 HOH HOH . C 3 HOH A 147 547 99 HOH HOH . C 3 HOH A 148 548 215 HOH HOH . C 3 HOH A 149 549 106 HOH HOH . C 3 HOH A 150 550 147 HOH HOH . C 3 HOH A 151 551 96 HOH HOH . C 3 HOH A 152 552 236 HOH HOH . C 3 HOH A 153 553 189 HOH HOH . C 3 HOH A 154 554 70 HOH HOH . C 3 HOH A 155 555 136 HOH HOH . C 3 HOH A 156 556 81 HOH HOH . C 3 HOH A 157 557 174 HOH HOH . C 3 HOH A 158 558 267 HOH HOH . C 3 HOH A 159 559 234 HOH HOH . C 3 HOH A 160 560 184 HOH HOH . C 3 HOH A 161 561 61 HOH HOH . C 3 HOH A 162 562 37 HOH HOH . C 3 HOH A 163 563 202 HOH HOH . C 3 HOH A 164 564 181 HOH HOH . C 3 HOH A 165 565 71 HOH HOH . C 3 HOH A 166 566 264 HOH HOH . C 3 HOH A 167 567 146 HOH HOH . C 3 HOH A 168 568 203 HOH HOH . C 3 HOH A 169 569 73 HOH HOH . C 3 HOH A 170 570 220 HOH HOH . C 3 HOH A 171 571 187 HOH HOH . C 3 HOH A 172 572 178 HOH HOH . C 3 HOH A 173 573 103 HOH HOH . C 3 HOH A 174 574 250 HOH HOH . C 3 HOH A 175 575 248 HOH HOH . C 3 HOH A 176 576 243 HOH HOH . C 3 HOH A 177 577 204 HOH HOH . C 3 HOH A 178 578 34 HOH HOH . C 3 HOH A 179 579 125 HOH HOH . C 3 HOH A 180 580 208 HOH HOH . C 3 HOH A 181 581 142 HOH HOH . C 3 HOH A 182 582 213 HOH HOH . C 3 HOH A 183 583 129 HOH HOH . C 3 HOH A 184 584 104 HOH HOH . C 3 HOH A 185 585 168 HOH HOH . C 3 HOH A 186 586 12 HOH HOH . C 3 HOH A 187 587 154 HOH HOH . C 3 HOH A 188 588 255 HOH HOH . C 3 HOH A 189 589 80 HOH HOH . C 3 HOH A 190 590 211 HOH HOH . C 3 HOH A 191 591 191 HOH HOH . C 3 HOH A 192 592 123 HOH HOH . C 3 HOH A 193 593 209 HOH HOH . C 3 HOH A 194 594 115 HOH HOH . C 3 HOH A 195 595 263 HOH HOH . C 3 HOH A 196 596 64 HOH HOH . C 3 HOH A 197 597 117 HOH HOH . C 3 HOH A 198 598 121 HOH HOH . C 3 HOH A 199 599 28 HOH HOH . C 3 HOH A 200 600 151 HOH HOH . C 3 HOH A 201 601 79 HOH HOH . C 3 HOH A 202 602 161 HOH HOH . C 3 HOH A 203 603 180 HOH HOH . C 3 HOH A 204 604 253 HOH HOH . C 3 HOH A 205 605 256 HOH HOH . C 3 HOH A 206 606 113 HOH HOH . C 3 HOH A 207 607 87 HOH HOH . C 3 HOH A 208 608 76 HOH HOH . C 3 HOH A 209 609 118 HOH HOH . C 3 HOH A 210 610 221 HOH HOH . C 3 HOH A 211 611 72 HOH HOH . C 3 HOH A 212 612 157 HOH HOH . C 3 HOH A 213 613 166 HOH HOH . C 3 HOH A 214 614 145 HOH HOH . C 3 HOH A 215 615 110 HOH HOH . C 3 HOH A 216 616 195 HOH HOH . C 3 HOH A 217 617 126 HOH HOH . C 3 HOH A 218 618 194 HOH HOH . C 3 HOH A 219 619 252 HOH HOH . C 3 HOH A 220 620 32 HOH HOH . C 3 HOH A 221 621 167 HOH HOH . C 3 HOH A 222 622 217 HOH HOH . C 3 HOH A 223 623 179 HOH HOH . C 3 HOH A 224 624 261 HOH HOH . C 3 HOH A 225 625 159 HOH HOH . C 3 HOH A 226 626 223 HOH HOH . C 3 HOH A 227 627 144 HOH HOH . C 3 HOH A 228 628 251 HOH HOH . C 3 HOH A 229 629 91 HOH HOH . C 3 HOH A 230 630 230 HOH HOH . C 3 HOH A 231 631 258 HOH HOH . C 3 HOH A 232 632 241 HOH HOH . C 3 HOH A 233 633 65 HOH HOH . C 3 HOH A 234 634 132 HOH HOH . C 3 HOH A 235 635 219 HOH HOH . C 3 HOH A 236 636 229 HOH HOH . C 3 HOH A 237 637 175 HOH HOH . C 3 HOH A 238 638 155 HOH HOH . C 3 HOH A 239 639 107 HOH HOH . C 3 HOH A 240 640 216 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAC NXL . . . B 2 -1.837 -1.568 -20.44 1 30.27 ? OAC NXL 301 A 1 HETATM 2 C CAN NXL . . . B 2 -1.041 -2.41 -20.18 1 35.08 ? CAN NXL 301 A 1 HETATM 3 N N NXL . . . B 2 -1.501 -3.772 -20.238 1 39.58 ? N NXL 301 A 1 HETATM 4 C CAJ NXL . . . B 2 -0.642 -4.978 -19.971 1 35.66 ? CAJ NXL 301 A 1 HETATM 5 C CA NXL . . . B 2 -2.922 -4.185 -20.557 1 40.09 ? CA NXL 301 A 1 HETATM 6 C C NXL . . . B 2 -3.646 -4.735 -19.329 1 36.39 ? C NXL 301 A 1 HETATM 7 O O NXL . . . B 2 -3.167 -4.663 -18.234 1 41.87 ? O NXL 301 A 1 HETATM 8 N NAA NXL . . . B 2 -4.942 -5.354 -19.498 1 40.07 ? NAA NXL 301 A 1 HETATM 9 C CB NXL . . . B 2 -3.008 -5.244 -21.652 1 38.99 ? CB NXL 301 A 1 HETATM 10 C CAH NXL . . . B 2 -2.025 -6.358 -21.538 1 35.91 ? CAH NXL 301 A 1 HETATM 11 C CAO NXL . . . B 2 -0.647 -5.945 -21.151 1 38.57 ? CAO NXL 301 A 1 HETATM 12 N NAK NXL . . . B 2 0.097 -5.342 -22.332 1 41.78 ? NAK NXL 301 A 1 HETATM 13 O OAL NXL . . . B 2 -0.477 -4.084 -22.711 1 41.34 ? OAL NXL 301 A 1 HETATM 14 S SAR NXL . . . B 2 0.745 -3.04 -23.207 1 33.34 ? SAR NXL 301 A 1 HETATM 15 O OAD NXL . . . B 2 1.44 -2.313 -21.894 1 35.41 ? OAD NXL 301 A 1 HETATM 16 O OAE NXL . . . B 2 1.901 -3.892 -24.024 1 51.33 ? OAE NXL 301 A 1 HETATM 17 O OAG NXL . . . B 2 0.096 -1.88 -24.193 1 38.17 ? OAG NXL 301 A 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 17 #