data_8B43 # _model_server_result.job_id Ocz3npH7ENjnPyPvJy2c4Q _model_server_result.datetime_utc '2024-11-22 17:32:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8b43 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":909}' # _entry.id 8B43 # _exptl.entry_id 8B43 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 400.47 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,12-bis(oxidanyl)-1,6,12,17-tetrazacyclodocosane-2,5,13,16-tetrone _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8B43 _cell.length_a 95.411 _cell.length_b 95.411 _cell.length_c 177.984 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8B43 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 J N N ? 5 K N N ? 5 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 798 A CYS 798 1_555 A SG CYS 804 A CYS 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc1 H FE FE . A FE 907 1_555 K O23 OX8 . A OX8 910 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc2 H FE FE . A FE 907 1_555 K N24 OX8 . A OX8 910 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.506 ? metalc ? metalc3 H FE FE . A FE 907 1_555 K O10 OX8 . A OX8 910 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc4 H FE FE . A FE 907 1_555 K O27 OX8 . A OX8 910 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.897 ? metalc ? metalc5 H FE FE . A FE 907 1_555 K O28 OX8 . A OX8 910 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.941 ? metalc ? metalc6 H FE FE . A FE 907 1_555 L O23 OX8 . A OX8 911 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? metalc ? metalc7 H FE FE . A FE 907 1_555 L O27 OX8 . A OX8 911 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? metalc ? metalc8 I FE FE . A FE 908 1_555 J N24 OX8 . A OX8 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.666 ? metalc ? metalc9 I FE FE . A FE 908 1_555 J O10 OX8 . A OX8 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? metalc ? metalc10 I FE FE . A FE 908 1_555 J O23 OX8 . A OX8 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? metalc ? metalc11 I FE FE . A FE 908 1_555 J O27 OX8 . A OX8 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? metalc ? metalc12 I FE FE . A FE 908 1_555 J O28 OX8 . A OX8 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.506 ? metalc ? metalc13 I FE FE . A FE 908 1_555 L N11 OX8 . A OX8 911 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.681 ? metalc ? metalc14 I FE FE . A FE 908 1_555 L O28 OX8 . A OX8 911 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc15 I FE FE . A FE 908 1_555 L O10 OX8 . A OX8 911 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.568 ? # _chem_comp.formula 'C18 H32 N4 O6' _chem_comp.formula_weight 400.47 _chem_comp.id OX8 _chem_comp.mon_nstd_flag . _chem_comp.name 1,12-bis(oxidanyl)-1,6,12,17-tetrazacyclodocosane-2,5,13,16-tetrone _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 C02 OX8 sing 283 n n C01 C26 OX8 sing 284 n n C03 C02 OX8 sing 285 n n C03 N04 OX8 sing 286 n n C26 C25 OX8 sing 287 n n N04 C05 OX8 sing 288 n n C25 N24 OX8 sing 289 n n O19 C18 OX8 doub 290 n n O06 C05 OX8 doub 291 n n C05 C07 OX8 sing 292 n n C20 C18 OX8 sing 293 n n C20 C21 OX8 sing 294 n n N24 O27 OX8 sing 295 n n N24 C22 OX8 sing 296 n n C18 N17 OX8 sing 297 n n C21 C22 OX8 sing 298 n n C07 C08 OX8 sing 299 n n C15 C14 OX8 sing 300 n n C15 C16 OX8 sing 301 n n C22 O23 OX8 doub 302 n n N17 C16 OX8 sing 303 n n C14 C13 OX8 sing 304 n n C08 C09 OX8 sing 305 n n C09 O10 OX8 doub 306 n n C09 N11 OX8 sing 307 n n C12 N11 OX8 sing 308 n n C12 C13 OX8 sing 309 n n N11 O28 OX8 sing 310 n n C13 H1 OX8 sing 311 n n C13 H2 OX8 sing 312 n n C15 H3 OX8 sing 313 n n C15 H4 OX8 sing 314 n n C20 H5 OX8 sing 315 n n C20 H6 OX8 sing 316 n n C21 H7 OX8 sing 317 n n C21 H8 OX8 sing 318 n n C26 H9 OX8 sing 319 n n C26 H10 OX8 sing 320 n n C01 H11 OX8 sing 321 n n C01 H12 OX8 sing 322 n n C02 H13 OX8 sing 323 n n C02 H14 OX8 sing 324 n n C03 H15 OX8 sing 325 n n C03 H16 OX8 sing 326 n n C07 H17 OX8 sing 327 n n C07 H18 OX8 sing 328 n n C08 H19 OX8 sing 329 n n C08 H20 OX8 sing 330 n n C12 H21 OX8 sing 331 n n C12 H22 OX8 sing 332 n n C14 H23 OX8 sing 333 n n C14 H24 OX8 sing 334 n n C16 H25 OX8 sing 335 n n C16 H26 OX8 sing 336 n n C25 H27 OX8 sing 337 n n C25 H28 OX8 sing 338 n n N04 H29 OX8 sing 339 n n N17 H30 OX8 sing 340 n n O27 H31 OX8 sing 341 n n O28 H32 OX8 sing 342 n n # _atom_sites.entry_id 8B43 _atom_sites.fract_transf_matrix[1][1] 0.010481 _atom_sites.fract_transf_matrix[1][2] 0.006051 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012102 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005618 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 901 913 SO4 SO4 . C 2 SO4 A 1 902 918 SO4 SO4 . D 2 SO4 A 1 903 924 SO4 SO4 . E 3 BOG A 1 904 930 BOG BOG . F 3 BOG A 1 905 931 BOG BOG . G 3 BOG A 1 906 933 BOG BOG . H 4 FE A 1 907 1 FE FE . I 4 FE A 1 908 2 FE FE . J 5 OX8 A 1 909 3 OX8 LIG . K 5 OX8 A 1 910 4 OX8 LIG . L 5 OX8 A 1 911 5 OX8 LIG . M 2 SO4 A 1 912 1 SO4 SO4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 OX8 . . . J 5 18.333 -40.28 -0.756 1 68.9 ? C13 OX8 909 A 1 HETATM 2 C C15 OX8 . . . J 5 18.665 -38.749 -2.72 1 64.27 ? C15 OX8 909 A 1 HETATM 3 C C20 OX8 . . . J 5 16.378 -34.957 -3.871 1 87.3 ? C20 OX8 909 A 1 HETATM 4 C C21 OX8 . . . J 5 14.935 -35.332 -3.555 1 86.96 ? C21 OX8 909 A 1 HETATM 5 C C22 OX8 . . . J 5 14.86 -36.719 -2.933 1 85.28 ? C22 OX8 909 A 1 HETATM 6 C C26 OX8 . . . J 5 15.26 -38.149 -6.119 1 67.9 ? C26 OX8 909 A 1 HETATM 7 C C01 OX8 . . . J 5 14.702 -39.342 -6.881 1 58.9 ? C01 OX8 909 A 1 HETATM 8 C C02 OX8 . . . J 5 15.336 -40.646 -6.425 1 69.21 ? C02 OX8 909 A 1 HETATM 9 C C03 OX8 . . . J 5 14.416 -41.836 -6.693 1 86.37 ? C03 OX8 909 A 1 HETATM 10 C C05 OX8 . . . J 5 14.471 -42.692 -4.363 1 83.36 ? C05 OX8 909 A 1 HETATM 11 C C07 OX8 . . . J 5 13.794 -43.013 -3.045 1 85.38 ? C07 OX8 909 A 1 HETATM 12 C C08 OX8 . . . J 5 14.8 -42.654 -1.956 1 100.34 ? C08 OX8 909 A 1 HETATM 13 C C09 OX8 . . . J 5 14.683 -41.212 -1.482 1 98.22 ? C09 OX8 909 A 1 HETATM 14 C C12 OX8 . . . J 5 17.183 -41.175 -1.21 1 86.58 ? C12 OX8 909 A 1 HETATM 15 C C14 OX8 . . . J 5 19.223 -39.931 -1.941 1 63.03 ? C14 OX8 909 A 1 HETATM 16 C C16 OX8 . . . J 5 18.833 -37.433 -1.961 1 72.99 ? C16 OX8 909 A 1 HETATM 17 C C18 OX8 . . . J 5 17.369 -36.102 -3.676 1 79.12 ? C18 OX8 909 A 1 HETATM 18 C C25 OX8 . . . J 5 14.205 -37.51 -5.219 1 81.5 ? C25 OX8 909 A 1 HETATM 19 N N04 OX8 . . . J 5 13.714 -42.149 -5.469 1 83.07 ? N04 OX8 909 A 1 HETATM 20 N N11 OX8 . . . J 5 15.902 -40.491 -1.116 1 100.14 ? N11 OX8 909 A 1 HETATM 21 N N17 OX8 . . . J 5 17.874 -36.391 -2.331 1 91.11 ? N17 OX8 909 A 1 HETATM 22 N N24 OX8 . . . J 5 14.478 -37.806 -3.821 1 94.26 ? N24 OX8 909 A 1 HETATM 23 O O06 OX8 . . . J 5 15.637 -42.88 -4.46 1 101.18 ? O06 OX8 909 A 1 HETATM 24 O O10 OX8 . . . J 5 13.61 -40.705 -1.425 1 98.39 ? O10 OX8 909 A 1 HETATM 25 O O19 OX8 . . . J 5 17.697 -36.713 -4.638 1 85.87 ? O19 OX8 909 A 1 HETATM 26 O O23 OX8 . . . J 5 15.096 -36.882 -1.773 1 77.31 ? O23 OX8 909 A 1 HETATM 27 O O27 OX8 . . . J 5 14.374 -39.126 -3.36 1 97.38 ? O27 OX8 909 A 1 HETATM 28 O O28 OX8 . . . J 5 15.861 -39.156 -0.67 1 98.88 ? O28 OX8 909 A 1 # _model_server_stats.io_time_ms 31 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 28 #