data_8B43 # _model_server_result.job_id 47mB63DMaYQPlAAeXGz7xw _model_server_result.datetime_utc '2024-11-22 17:42:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8b43 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":910}' # _entry.id 8B43 # _exptl.entry_id 8B43 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 400.47 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,12-bis(oxidanyl)-1,6,12,17-tetrazacyclodocosane-2,5,13,16-tetrone _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8B43 _cell.length_a 95.411 _cell.length_b 95.411 _cell.length_c 177.984 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8B43 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 J N N ? 5 K N N ? 5 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 798 A CYS 798 1_555 A SG CYS 804 A CYS 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc1 H FE FE . A FE 907 1_555 K O23 OX8 . A OX8 910 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc2 H FE FE . A FE 907 1_555 K N24 OX8 . A OX8 910 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.506 ? metalc ? metalc3 H FE FE . A FE 907 1_555 K O10 OX8 . A OX8 910 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc4 H FE FE . A FE 907 1_555 K O27 OX8 . A OX8 910 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.897 ? metalc ? metalc5 H FE FE . A FE 907 1_555 K O28 OX8 . A OX8 910 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.941 ? metalc ? metalc6 H FE FE . A FE 907 1_555 L O23 OX8 . A OX8 911 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? metalc ? metalc7 H FE FE . A FE 907 1_555 L O27 OX8 . A OX8 911 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? metalc ? metalc8 I FE FE . A FE 908 1_555 J N24 OX8 . A OX8 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.666 ? metalc ? metalc9 I FE FE . A FE 908 1_555 J O10 OX8 . A OX8 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? metalc ? metalc10 I FE FE . A FE 908 1_555 J O23 OX8 . A OX8 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? metalc ? metalc11 I FE FE . A FE 908 1_555 J O27 OX8 . A OX8 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? metalc ? metalc12 I FE FE . A FE 908 1_555 J O28 OX8 . A OX8 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.506 ? metalc ? metalc13 I FE FE . A FE 908 1_555 L N11 OX8 . A OX8 911 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.681 ? metalc ? metalc14 I FE FE . A FE 908 1_555 L O28 OX8 . A OX8 911 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc15 I FE FE . A FE 908 1_555 L O10 OX8 . A OX8 911 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.568 ? # _chem_comp.formula 'C18 H32 N4 O6' _chem_comp.formula_weight 400.47 _chem_comp.id OX8 _chem_comp.mon_nstd_flag . _chem_comp.name 1,12-bis(oxidanyl)-1,6,12,17-tetrazacyclodocosane-2,5,13,16-tetrone _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 C02 OX8 sing 283 n n C01 C26 OX8 sing 284 n n C03 C02 OX8 sing 285 n n C03 N04 OX8 sing 286 n n C26 C25 OX8 sing 287 n n N04 C05 OX8 sing 288 n n C25 N24 OX8 sing 289 n n O19 C18 OX8 doub 290 n n O06 C05 OX8 doub 291 n n C05 C07 OX8 sing 292 n n C20 C18 OX8 sing 293 n n C20 C21 OX8 sing 294 n n N24 O27 OX8 sing 295 n n N24 C22 OX8 sing 296 n n C18 N17 OX8 sing 297 n n C21 C22 OX8 sing 298 n n C07 C08 OX8 sing 299 n n C15 C14 OX8 sing 300 n n C15 C16 OX8 sing 301 n n C22 O23 OX8 doub 302 n n N17 C16 OX8 sing 303 n n C14 C13 OX8 sing 304 n n C08 C09 OX8 sing 305 n n C09 O10 OX8 doub 306 n n C09 N11 OX8 sing 307 n n C12 N11 OX8 sing 308 n n C12 C13 OX8 sing 309 n n N11 O28 OX8 sing 310 n n C13 H1 OX8 sing 311 n n C13 H2 OX8 sing 312 n n C15 H3 OX8 sing 313 n n C15 H4 OX8 sing 314 n n C20 H5 OX8 sing 315 n n C20 H6 OX8 sing 316 n n C21 H7 OX8 sing 317 n n C21 H8 OX8 sing 318 n n C26 H9 OX8 sing 319 n n C26 H10 OX8 sing 320 n n C01 H11 OX8 sing 321 n n C01 H12 OX8 sing 322 n n C02 H13 OX8 sing 323 n n C02 H14 OX8 sing 324 n n C03 H15 OX8 sing 325 n n C03 H16 OX8 sing 326 n n C07 H17 OX8 sing 327 n n C07 H18 OX8 sing 328 n n C08 H19 OX8 sing 329 n n C08 H20 OX8 sing 330 n n C12 H21 OX8 sing 331 n n C12 H22 OX8 sing 332 n n C14 H23 OX8 sing 333 n n C14 H24 OX8 sing 334 n n C16 H25 OX8 sing 335 n n C16 H26 OX8 sing 336 n n C25 H27 OX8 sing 337 n n C25 H28 OX8 sing 338 n n N04 H29 OX8 sing 339 n n N17 H30 OX8 sing 340 n n O27 H31 OX8 sing 341 n n O28 H32 OX8 sing 342 n n # _atom_sites.entry_id 8B43 _atom_sites.fract_transf_matrix[1][1] 0.010481 _atom_sites.fract_transf_matrix[1][2] 0.006051 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012102 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005618 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 901 913 SO4 SO4 . C 2 SO4 A 1 902 918 SO4 SO4 . D 2 SO4 A 1 903 924 SO4 SO4 . E 3 BOG A 1 904 930 BOG BOG . F 3 BOG A 1 905 931 BOG BOG . G 3 BOG A 1 906 933 BOG BOG . H 4 FE A 1 907 1 FE FE . I 4 FE A 1 908 2 FE FE . J 5 OX8 A 1 909 3 OX8 LIG . K 5 OX8 A 1 910 4 OX8 LIG . L 5 OX8 A 1 911 5 OX8 LIG . M 2 SO4 A 1 912 1 SO4 SO4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 OX8 . . . K 5 12.896 -33.596 -1.508 1 55.16 ? C13 OX8 910 A 1 HETATM 2 C C15 OX8 . . . K 5 11.646 -33.053 -3.682 1 60.22 ? C15 OX8 910 A 1 HETATM 3 C C20 OX8 . . . K 5 7.336 -34.308 -2.799 1 46.81 ? C20 OX8 910 A 1 HETATM 4 C C21 OX8 . . . K 5 6.782 -33.157 -1.962 1 50.78 ? C21 OX8 910 A 1 HETATM 5 C C22 OX8 . . . K 5 7.579 -33.046 -0.662 1 46.35 ? C22 OX8 910 A 1 HETATM 6 C C26 OX8 . . . K 5 7.819 -29.943 -1.648 1 58.62 ? C26 OX8 910 A 1 HETATM 7 C C01 OX8 . . . K 5 9.325 -30.179 -1.561 1 49.05 ? C01 OX8 910 A 1 HETATM 8 C C02 OX8 . . . K 5 10.049 -28.839 -1.642 1 49.74 ? C02 OX8 910 A 1 HETATM 9 C C03 OX8 . . . K 5 11.467 -28.895 -1.107 1 49.36 ? C03 OX8 910 A 1 HETATM 10 C C05 OX8 . . . K 5 12.718 -29.463 0.918 1 57.34 ? C05 OX8 910 A 1 HETATM 11 C C07 OX8 . . . K 5 12.861 -30.004 2.337 1 53.29 ? C07 OX8 910 A 1 HETATM 12 C C08 OX8 . . . K 5 13.164 -31.497 2.288 1 51.74 ? C08 OX8 910 A 1 HETATM 13 C C09 OX8 . . . K 5 11.9 -32.235 1.862 1 46.46 ? C09 OX8 910 A 1 HETATM 14 C C12 OX8 . . . K 5 13.155 -33.343 -0.016 1 55.97 ? C12 OX8 910 A 1 HETATM 15 C C14 OX8 . . . K 5 11.808 -32.759 -2.187 1 53.69 ? C14 OX8 910 A 1 HETATM 16 C C16 OX8 . . . K 5 11.08 -34.432 -4.042 1 57.22 ? C16 OX8 910 A 1 HETATM 17 C C18 OX8 . . . K 5 8.624 -33.909 -3.509 1 54.57 ? C18 OX8 910 A 1 HETATM 18 C C25 OX8 . . . K 5 6.983 -30.629 -0.565 1 61.03 ? C25 OX8 910 A 1 HETATM 19 N N04 OX8 . . . K 5 11.443 -29.42 0.243 1 53.84 ? N04 OX8 910 A 1 HETATM 20 N N11 OX8 . . . K 5 11.925 -33.145 0.73 1 52.4 ? N11 OX8 910 A 1 HETATM 21 N N17 OX8 . . . K 5 9.81 -34.747 -3.395 1 58.51 ? N17 OX8 910 A 1 HETATM 22 N N24 OX8 . . . K 5 7.665 -31.76 0.019 1 52.87 ? N24 OX8 910 A 1 HETATM 23 O O06 OX8 . . . K 5 13.666 -29.081 0.325 1 62.72 ? O06 OX8 910 A 1 HETATM 24 O O10 OX8 . . . K 5 10.899 -32.062 2.468 1 46.22 ? O10 OX8 910 A 1 HETATM 25 O O19 OX8 . . . K 5 8.636 -32.911 -4.145 1 68.5 ? O19 OX8 910 A 1 HETATM 26 O O23 OX8 . . . K 5 8.112 -34.012 -0.236 1 45.88 ? O23 OX8 910 A 1 HETATM 27 O O27 OX8 . . . K 5 8.363 -31.556 1.228 1 57.15 ? O27 OX8 910 A 1 HETATM 28 O O28 OX8 . . . K 5 10.756 -33.833 0.355 1 59.85 ? O28 OX8 910 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 28 #