data_8B43 # _model_server_result.job_id RYJoR8deO6DRLhr0WUsJNQ _model_server_result.datetime_utc '2024-11-22 17:36:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8b43 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":911}' # _entry.id 8B43 # _exptl.entry_id 8B43 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 400.47 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,12-bis(oxidanyl)-1,6,12,17-tetrazacyclodocosane-2,5,13,16-tetrone _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8B43 _cell.length_a 95.411 _cell.length_b 95.411 _cell.length_c 177.984 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8B43 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 J N N ? 5 K N N ? 5 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 798 A CYS 798 1_555 A SG CYS 804 A CYS 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc1 H FE FE . A FE 907 1_555 K O23 OX8 . A OX8 910 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc2 H FE FE . A FE 907 1_555 K N24 OX8 . A OX8 910 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.506 ? metalc ? metalc3 H FE FE . A FE 907 1_555 K O10 OX8 . A OX8 910 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc4 H FE FE . A FE 907 1_555 K O27 OX8 . A OX8 910 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.897 ? metalc ? metalc5 H FE FE . A FE 907 1_555 K O28 OX8 . A OX8 910 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.941 ? metalc ? metalc6 H FE FE . A FE 907 1_555 L O23 OX8 . A OX8 911 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? metalc ? metalc7 H FE FE . A FE 907 1_555 L O27 OX8 . A OX8 911 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? metalc ? metalc8 I FE FE . A FE 908 1_555 J N24 OX8 . A OX8 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.666 ? metalc ? metalc9 I FE FE . A FE 908 1_555 J O10 OX8 . A OX8 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? metalc ? metalc10 I FE FE . A FE 908 1_555 J O23 OX8 . A OX8 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? metalc ? metalc11 I FE FE . A FE 908 1_555 J O27 OX8 . A OX8 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? metalc ? metalc12 I FE FE . A FE 908 1_555 J O28 OX8 . A OX8 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.506 ? metalc ? metalc13 I FE FE . A FE 908 1_555 L N11 OX8 . A OX8 911 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.681 ? metalc ? metalc14 I FE FE . A FE 908 1_555 L O28 OX8 . A OX8 911 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc15 I FE FE . A FE 908 1_555 L O10 OX8 . A OX8 911 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.568 ? # _chem_comp.formula 'C18 H32 N4 O6' _chem_comp.formula_weight 400.47 _chem_comp.id OX8 _chem_comp.mon_nstd_flag . _chem_comp.name 1,12-bis(oxidanyl)-1,6,12,17-tetrazacyclodocosane-2,5,13,16-tetrone _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 C02 OX8 sing 283 n n C01 C26 OX8 sing 284 n n C03 C02 OX8 sing 285 n n C03 N04 OX8 sing 286 n n C26 C25 OX8 sing 287 n n N04 C05 OX8 sing 288 n n C25 N24 OX8 sing 289 n n O19 C18 OX8 doub 290 n n O06 C05 OX8 doub 291 n n C05 C07 OX8 sing 292 n n C20 C18 OX8 sing 293 n n C20 C21 OX8 sing 294 n n N24 O27 OX8 sing 295 n n N24 C22 OX8 sing 296 n n C18 N17 OX8 sing 297 n n C21 C22 OX8 sing 298 n n C07 C08 OX8 sing 299 n n C15 C14 OX8 sing 300 n n C15 C16 OX8 sing 301 n n C22 O23 OX8 doub 302 n n N17 C16 OX8 sing 303 n n C14 C13 OX8 sing 304 n n C08 C09 OX8 sing 305 n n C09 O10 OX8 doub 306 n n C09 N11 OX8 sing 307 n n C12 N11 OX8 sing 308 n n C12 C13 OX8 sing 309 n n N11 O28 OX8 sing 310 n n C13 H1 OX8 sing 311 n n C13 H2 OX8 sing 312 n n C15 H3 OX8 sing 313 n n C15 H4 OX8 sing 314 n n C20 H5 OX8 sing 315 n n C20 H6 OX8 sing 316 n n C21 H7 OX8 sing 317 n n C21 H8 OX8 sing 318 n n C26 H9 OX8 sing 319 n n C26 H10 OX8 sing 320 n n C01 H11 OX8 sing 321 n n C01 H12 OX8 sing 322 n n C02 H13 OX8 sing 323 n n C02 H14 OX8 sing 324 n n C03 H15 OX8 sing 325 n n C03 H16 OX8 sing 326 n n C07 H17 OX8 sing 327 n n C07 H18 OX8 sing 328 n n C08 H19 OX8 sing 329 n n C08 H20 OX8 sing 330 n n C12 H21 OX8 sing 331 n n C12 H22 OX8 sing 332 n n C14 H23 OX8 sing 333 n n C14 H24 OX8 sing 334 n n C16 H25 OX8 sing 335 n n C16 H26 OX8 sing 336 n n C25 H27 OX8 sing 337 n n C25 H28 OX8 sing 338 n n N04 H29 OX8 sing 339 n n N17 H30 OX8 sing 340 n n O27 H31 OX8 sing 341 n n O28 H32 OX8 sing 342 n n # _atom_sites.entry_id 8B43 _atom_sites.fract_transf_matrix[1][1] 0.010481 _atom_sites.fract_transf_matrix[1][2] 0.006051 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012102 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005618 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 901 913 SO4 SO4 . C 2 SO4 A 1 902 918 SO4 SO4 . D 2 SO4 A 1 903 924 SO4 SO4 . E 3 BOG A 1 904 930 BOG BOG . F 3 BOG A 1 905 931 BOG BOG . G 3 BOG A 1 906 933 BOG BOG . H 4 FE A 1 907 1 FE FE . I 4 FE A 1 908 2 FE FE . J 5 OX8 A 1 909 3 OX8 LIG . K 5 OX8 A 1 910 4 OX8 LIG . L 5 OX8 A 1 911 5 OX8 LIG . M 2 SO4 A 1 912 1 SO4 SO4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 OX8 . . . L 5 9.718 -38.25 -0.008 1 61.02 ? C13 OX8 911 A 1 HETATM 2 C C15 OX8 . . . L 5 7.475 -38.763 -0.958 1 33.67 ? C15 OX8 911 A 1 HETATM 3 C C20 OX8 . . . L 5 7.371 -37.362 2.333 1 45.53 ? C20 OX8 911 A 1 HETATM 4 C C21 OX8 . . . L 5 7.482 -36.454 3.558 1 43.3 ? C21 OX8 911 A 1 HETATM 5 C C22 OX8 . . . L 5 8.227 -35.186 3.133 1 50.51 ? C22 OX8 911 A 1 HETATM 6 C C26 OX8 . . . L 5 8.4 -34.094 6.348 1 40.86 ? C26 OX8 911 A 1 HETATM 7 C C01 OX8 . . . L 5 8.658 -35.571 6.645 1 45.87 ? C01 OX8 911 A 1 HETATM 8 C C02 OX8 . . . L 5 10.122 -35.97 6.532 1 44.28 ? C02 OX8 911 A 1 HETATM 9 C C03 OX8 . . . L 5 11.012 -34.792 6.186 1 40.29 ? C03 OX8 911 A 1 HETATM 10 C C05 OX8 . . . L 5 12.371 -36.05 4.485 1 65.57 ? C05 OX8 911 A 1 HETATM 11 C C07 OX8 . . . L 5 12.841 -36.163 3.045 1 61.43 ? C07 OX8 911 A 1 HETATM 12 C C08 OX8 . . . L 5 12.09 -37.221 2.249 1 61.13 ? C08 OX8 911 A 1 HETATM 13 C C09 OX8 . . . L 5 12.664 -37.238 0.832 1 74.88 ? C09 OX8 911 A 1 HETATM 14 C C12 OX8 . . . L 5 10.364 -36.875 -0.179 1 61.06 ? C12 OX8 911 A 1 HETATM 15 C C14 OX8 . . . L 5 8.977 -38.795 -1.221 1 50.49 ? C14 OX8 911 A 1 HETATM 16 C C16 OX8 . . . L 5 7.049 -37.312 -0.774 1 35.13 ? C16 OX8 911 A 1 HETATM 17 C C18 OX8 . . . L 5 6.045 -37.197 1.585 1 58.87 ? C18 OX8 911 A 1 HETATM 18 C C25 OX8 . . . L 5 7.445 -33.899 5.169 1 49.17 ? C25 OX8 911 A 1 HETATM 19 N N04 OX8 . . . L 5 11.491 -34.95 4.832 1 67.73 ? N04 OX8 911 A 1 HETATM 20 N N11 OX8 . . . L 5 11.794 -37.057 -0.324 1 74.81 ? N11 OX8 911 A 1 HETATM 21 N N17 OX8 . . . L 5 5.927 -37.185 0.128 1 41.12 ? N17 OX8 911 A 1 HETATM 22 N N24 OX8 . . . L 5 8.188 -33.966 3.918 1 50.43 ? N24 OX8 911 A 1 HETATM 23 O O06 OX8 . . . L 5 12.726 -36.84 5.296 1 84.52 ? O06 OX8 911 A 1 HETATM 24 O O10 OX8 . . . L 5 13.833 -37.388 0.675 1 85.78 ? O10 OX8 911 A 1 HETATM 25 O O19 OX8 . . . L 5 5.059 -37.078 2.234 1 62.67 ? O19 OX8 911 A 1 HETATM 26 O O23 OX8 . . . L 5 8.847 -35.196 2.126 1 58.48 ? O23 OX8 911 A 1 HETATM 27 O O27 OX8 . . . L 5 8.889 -32.843 3.447 1 47.9 ? O27 OX8 911 A 1 HETATM 28 O O28 OX8 . . . L 5 12.322 -37.071 -1.621 1 92.89 ? O28 OX8 911 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 28 #