data_8B47
#
_model_server_result.job_id            dmem7PB_BsR_1FuO7dJ7FA 
_model_server_result.datetime_utc      '2025-01-25 12:53:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8b47 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":301}' 
#
_entry.id    8B47 
#
_exptl.entry_id    8B47 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              715.698 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (1~{R},23~{R},24~{S},25~{R})-14-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl]-7-azanyl-24,25-bis(oxidanyl)-20,20-bis(oxidanylidene)-26-oxa-20$l^{6}-thia-2,4,6,9,14,17,21-heptazatetracyclo[21.2.1.0^{2,10}.0^{3,8}]hexacosa-3,5,7,9-tetraen-11-yn-16-one 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8B47 
_cell.length_a            63.406 
_cell.length_b            145.885 
_cell.length_c            54.904 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8B47 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 F N N 
#
_chem_comp.formula           'C27 H33 N13 O9 S' 
_chem_comp.formula_weight    715.698 
_chem_comp.id                OWU 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (1~{R},23~{R},24~{S},25~{R})-14-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl]-7-azanyl-24,25-bis(oxidanyl)-20,20-bis(oxidanylidene)-26-oxa-20$l^{6}-thia-2,4,6,9,14,17,21-heptazatetracyclo[21.2.1.0^{2,10}.0^{3,8}]hexacosa-3,5,7,9-tetraen-11-yn-16-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O6 C24 OWU sing 274 n n 
O5 C23 OWU sing 275 n n 
C23 C24 OWU sing 276 n n 
C23 C17 OWU sing 277 n n 
C24 C16 OWU sing 278 n n 
C16 N10 OWU sing 279 n n 
C16 O1 OWU sing 280 n n 
C17 C18 OWU sing 281 n n 
C17 O1 OWU sing 282 n n 
O3 S OWU doub 283 n n 
C18 N11 OWU sing 284 n n 
N9 C15 OWU doub 285 n y 
N9 C14 OWU sing 286 n y 
N10 C15 OWU sing 287 n y 
N10 C11 OWU sing 288 n y 
C15 C12 OWU sing 289 n y 
C14 N8 OWU doub 290 n y 
C10 C11 OWU sing 291 n n 
C10 C9 OWU trip 292 n n 
S O2 OWU doub 293 n n 
S N11 OWU sing 294 n n 
S C19 OWU sing 295 n n 
C11 N6 OWU doub 296 n y 
C9 C8 OWU sing 297 n n 
C8 N5 OWU sing 298 n n 
C22 C21 OWU sing 299 n n 
C22 N5 OWU sing 300 n n 
C12 N6 OWU sing 301 n y 
C12 C13 OWU doub 302 n y 
N8 C13 OWU sing 303 n y 
N12 C21 OWU sing 304 n n 
N12 C20 OWU sing 305 n n 
C21 O4 OWU doub 306 n n 
N5 C7 OWU sing 307 n n 
C13 N7 OWU sing 308 n n 
C19 C20 OWU sing 309 n n 
C7 C6 OWU sing 310 n n 
O C6 OWU sing 311 n n 
O C5 OWU sing 312 n n 
C6 C25 OWU sing 313 n n 
N2 C1 OWU doub 314 n y 
N2 C2 OWU sing 315 n y 
C1 N1 OWU sing 316 n y 
C5 N4 OWU sing 317 n n 
C5 C26 OWU sing 318 n n 
C2 N4 OWU sing 319 n y 
C2 C3 OWU doub 320 n y 
N4 C4 OWU sing 321 n y 
N1 C OWU doub 322 n y 
C25 O7 OWU sing 323 n n 
C25 C26 OWU sing 324 n n 
C3 C OWU sing 325 n y 
C3 N3 OWU sing 326 n y 
C N OWU sing 327 n n 
C4 N3 OWU doub 328 n y 
C26 O8 OWU sing 329 n n 
C7 H1 OWU sing 330 n n 
C7 H2 OWU sing 331 n n 
C8 H3 OWU sing 332 n n 
C8 H4 OWU sing 333 n n 
C1 H5 OWU sing 334 n n 
O5 H6 OWU sing 335 n n 
C5 H7 OWU sing 336 n n 
C6 H8 OWU sing 337 n n 
C4 H9 OWU sing 338 n n 
N H10 OWU sing 339 n n 
N H11 OWU sing 340 n n 
C14 H12 OWU sing 341 n n 
C16 H13 OWU sing 342 n n 
C17 H14 OWU sing 343 n n 
C18 H15 OWU sing 344 n n 
C18 H16 OWU sing 345 n n 
C19 H17 OWU sing 346 n n 
C19 H18 OWU sing 347 n n 
C20 H19 OWU sing 348 n n 
C20 H20 OWU sing 349 n n 
C22 H21 OWU sing 350 n n 
C22 H22 OWU sing 351 n n 
C23 H23 OWU sing 352 n n 
C24 H24 OWU sing 353 n n 
C25 H25 OWU sing 354 n n 
C26 H26 OWU sing 355 n n 
N11 H27 OWU sing 356 n n 
N12 H28 OWU sing 357 n n 
N7 H30 OWU sing 358 n n 
N7 H31 OWU sing 359 n n 
O6 H32 OWU sing 360 n n 
O7 H33 OWU sing 361 n n 
O8 H34 OWU sing 362 n n 
#
_atom_sites.entry_id                     8B47 
_atom_sites.fract_transf_matrix[1][1]    0.015771 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006855 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.018214 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 OWU A 1 301 267 OWU XXX . 
D 3 1PE A 1 302 268 1PE 1PE . 
E 4 PO4 A 1 303 2 PO4 PO4 . 
F 2 OWU B 1 301 267 OWU XXX . 
G 4 PO4 B 1 302 1 PO4 PO4 . 
H 5 HOH A 1 401 46 HOH HOH . 
H 5 HOH A 2 402 48 HOH HOH . 
H 5 HOH A 3 403 39 HOH HOH . 
H 5 HOH A 4 404 29 HOH HOH . 
H 5 HOH A 5 405 10 HOH HOH . 
H 5 HOH A 6 406 25 HOH HOH . 
H 5 HOH A 7 407 55 HOH HOH . 
H 5 HOH A 8 408 21 HOH HOH . 
H 5 HOH A 9 409 1 HOH HOH . 
H 5 HOH A 10 410 12 HOH HOH . 
H 5 HOH A 11 411 64 HOH HOH . 
H 5 HOH A 12 412 19 HOH HOH . 
H 5 HOH A 13 413 53 HOH HOH . 
H 5 HOH A 14 414 52 HOH HOH . 
H 5 HOH A 15 415 44 HOH HOH . 
H 5 HOH A 16 416 77 HOH HOH . 
H 5 HOH A 17 417 27 HOH HOH . 
H 5 HOH A 18 418 17 HOH HOH . 
H 5 HOH A 19 419 61 HOH HOH . 
H 5 HOH A 20 420 54 HOH HOH . 
H 5 HOH A 21 421 47 HOH HOH . 
H 5 HOH A 22 422 42 HOH HOH . 
H 5 HOH A 23 423 58 HOH HOH . 
H 5 HOH A 24 424 67 HOH HOH . 
H 5 HOH A 25 425 11 HOH HOH . 
H 5 HOH A 26 426 34 HOH HOH . 
H 5 HOH A 27 427 57 HOH HOH . 
H 5 HOH A 28 428 62 HOH HOH . 
H 5 HOH A 29 429 37 HOH HOH . 
H 5 HOH A 30 430 20 HOH HOH . 
H 5 HOH A 31 431 3 HOH HOH . 
H 5 HOH A 32 432 4 HOH HOH . 
H 5 HOH A 33 433 60 HOH HOH . 
H 5 HOH A 34 434 43 HOH HOH . 
H 5 HOH A 35 435 65 HOH HOH . 
H 5 HOH A 36 436 28 HOH HOH . 
H 5 HOH A 37 437 51 HOH HOH . 
H 5 HOH A 38 438 38 HOH HOH . 
H 5 HOH A 39 439 69 HOH HOH . 
H 5 HOH A 40 440 66 HOH HOH . 
I 5 HOH B 1 401 6 HOH HOH . 
I 5 HOH B 2 402 26 HOH HOH . 
I 5 HOH B 3 403 49 HOH HOH . 
I 5 HOH B 4 404 8 HOH HOH . 
I 5 HOH B 5 405 40 HOH HOH . 
I 5 HOH B 6 406 23 HOH HOH . 
I 5 HOH B 7 407 76 HOH HOH . 
I 5 HOH B 8 408 68 HOH HOH . 
I 5 HOH B 9 409 24 HOH HOH . 
I 5 HOH B 10 410 35 HOH HOH . 
I 5 HOH B 11 411 7 HOH HOH . 
I 5 HOH B 12 412 63 HOH HOH . 
I 5 HOH B 13 413 15 HOH HOH . 
I 5 HOH B 14 414 5 HOH HOH . 
I 5 HOH B 15 415 36 HOH HOH . 
I 5 HOH B 16 416 71 HOH HOH . 
I 5 HOH B 17 417 18 HOH HOH . 
I 5 HOH B 18 418 50 HOH HOH . 
I 5 HOH B 19 419 73 HOH HOH . 
I 5 HOH B 20 420 45 HOH HOH . 
I 5 HOH B 21 421 56 HOH HOH . 
I 5 HOH B 22 422 16 HOH HOH . 
I 5 HOH B 23 423 74 HOH HOH . 
I 5 HOH B 24 424 9 HOH HOH . 
I 5 HOH B 25 425 70 HOH HOH . 
I 5 HOH B 26 426 75 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 OWU . . . F 2 -10.978 5.63 22.611 1 52.51 ? N1 OWU 301 B 1 
HETATM 2 C C7 OWU . . . F 2 -16.641 11.654 24.487 1 59.16 ? C7 OWU 301 B 1 
HETATM 3 C C8 OWU . . . F 2 -16.165 12.46 26.752 1 61.93 ? C8 OWU 301 B 1 
HETATM 4 N N2 OWU . . . F 2 -11.423 7.884 23.333 1 60.23 ? N2 OWU 301 B 1 
HETATM 5 C C9 OWU . . . F 2 -14.716 12.34 26.992 1 59.98 ? C9 OWU 301 B 1 
HETATM 6 O O1 OWU . . . F 2 -12.126 9.53 27.616 1 67.81 ? O1 OWU 301 B 1 
HETATM 7 C C1 OWU . . . F 2 -10.664 6.797 23.178 1 56.15 ? C1 OWU 301 B 1 
HETATM 8 O O5 OWU . . . F 2 -12.087 8.436 30.508 1 67.88 ? O5 OWU 301 B 1 
HETATM 9 C C5 OWU . . . F 2 -13.676 9.949 23.297 1 57.83 ? C5 OWU 301 B 1 
HETATM 10 C C6 OWU . . . F 2 -15.221 11.519 23.971 1 55.84 ? C6 OWU 301 B 1 
HETATM 11 N N3 OWU . . . F 2 -14.436 6.708 21.821 1 57.07 ? N3 OWU 301 B 1 
HETATM 12 C C4 OWU . . . F 2 -14.73 7.925 22.208 1 56.12 ? C4 OWU 301 B 1 
HETATM 13 O O4 OWU . . . F 2 -19.56 9.342 25.534 1 64.82 ? O4 OWU 301 B 1 
HETATM 14 C C3 OWU . . . F 2 -13.118 6.547 22.209 1 57.23 ? C3 OWU 301 B 1 
HETATM 15 O O3 OWU . . . F 2 -15.829 6.483 28.173 1 72.95 ? O3 OWU 301 B 1 
HETATM 16 C C2 OWU . . . F 2 -12.644 7.692 22.83 1 59 ? C2 OWU 301 B 1 
HETATM 17 N N4 OWU . . . F 2 -13.694 8.576 22.821 1 53.78 ? N4 OWU 301 B 1 
HETATM 18 N N OWU . . . F 2 -12.521 4.305 21.52 1 52.76 ? N OWU 301 B 1 
HETATM 19 C C OWU . . . F 2 -12.218 5.468 22.103 1 53.28 ? C OWU 301 B 1 
HETATM 20 O O OWU . . . F 2 -14.796 10.154 24.135 1 62.62 ? O OWU 301 B 1 
HETATM 21 C C10 OWU . . . F 2 -13.53 12.306 27.119 1 56.34 ? C10 OWU 301 B 1 
HETATM 22 C C11 OWU . . . F 2 -12.129 12.548 27.074 1 58.17 ? C11 OWU 301 B 1 
HETATM 23 C C12 OWU . . . F 2 -10.197 13.335 26.625 1 56 ? C12 OWU 301 B 1 
HETATM 24 C C13 OWU . . . F 2 -9.058 14.003 26.133 1 52.59 ? C13 OWU 301 B 1 
HETATM 25 C C14 OWU . . . F 2 -7.791 12.366 27.166 1 54.08 ? C14 OWU 301 B 1 
HETATM 26 C C15 OWU . . . F 2 -9.979 12.195 27.382 1 57.9 ? C15 OWU 301 B 1 
HETATM 27 C C16 OWU . . . F 2 -11.537 10.506 28.458 1 66.25 ? C16 OWU 301 B 1 
HETATM 28 C C17 OWU . . . F 2 -13.114 8.778 28.36 1 69.23 ? C17 OWU 301 B 1 
HETATM 29 C C18 OWU . . . F 2 -14.474 8.936 27.708 1 66.21 ? C18 OWU 301 B 1 
HETATM 30 C C19 OWU . . . F 2 -16.712 6.409 25.723 1 69.41 ? C19 OWU 301 B 1 
HETATM 31 C C20 OWU . . . F 2 -17.091 7.757 25.131 1 63.73 ? C20 OWU 301 B 1 
HETATM 32 C C21 OWU . . . F 2 -18.451 9.595 25.996 1 63.29 ? C21 OWU 301 B 1 
HETATM 33 C C22 OWU . . . F 2 -18.066 11.008 26.396 1 61.25 ? C22 OWU 301 B 1 
HETATM 34 C C23 OWU . . . F 2 -13.004 9.266 29.803 1 68.79 ? C23 OWU 301 B 1 
HETATM 35 C C24 OWU . . . F 2 -12.513 10.703 29.616 1 64.25 ? C24 OWU 301 B 1 
HETATM 36 C C25 OWU . . . F 2 -15.004 11.8 22.487 1 52.36 ? C25 OWU 301 B 1 
HETATM 37 C C26 OWU . . . F 2 -13.757 10.964 22.15 1 54.27 ? C26 OWU 301 B 1 
HETATM 38 N N10 OWU . . . F 2 -11.234 11.694 27.674 1 62.82 ? N10 OWU 301 B 1 
HETATM 39 N N11 OWU . . . F 2 -14.641 7.984 26.604 1 73.8 ? N11 OWU 301 B 1 
HETATM 40 N N12 OWU . . . F 2 -17.507 8.676 26.179 1 61.07 ? N12 OWU 301 B 1 
HETATM 41 N N5 OWU . . . F 2 -16.736 11.395 25.931 1 63.53 ? N5 OWU 301 B 1 
HETATM 42 N N6 OWU . . . F 2 -11.558 13.56 26.439 1 56.54 ? N6 OWU 301 B 1 
HETATM 43 N N7 OWU . . . F 2 -9.105 15.135 25.424 1 53.15 ? N7 OWU 301 B 1 
HETATM 44 N N8 OWU . . . F 2 -7.848 13.472 26.418 1 51.91 ? N8 OWU 301 B 1 
HETATM 45 N N9 OWU . . . F 2 -8.793 11.662 27.699 1 54.27 ? N9 OWU 301 B 1 
HETATM 46 O O2 OWU . . . F 2 -14.364 5.534 26.422 1 68.97 ? O2 OWU 301 B 1 
HETATM 47 O O6 OWU . . . F 2 -11.863 11.25 30.757 1 64.76 ? O6 OWU 301 B 1 
HETATM 48 O O7 OWU . . . F 2 -14.749 13.174 22.221 1 48.66 ? O7 OWU 301 B 1 
HETATM 49 O O8 OWU . . . F 2 -12.54 11.7 22.1 1 53.93 ? O8 OWU 301 B 1 
HETATM 50 S S OWU . . . F 2 -15.33 6.508 26.831 1 80.71 ? S OWU 301 B 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           365 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           50 
#