data_8B47 # _model_server_result.job_id L-LLpjkPwEv9HKdtG0STIA _model_server_result.datetime_utc '2025-01-10 15:00:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8b47 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 8B47 # _exptl.entry_id 8B47 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.278 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PENTAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8B47 _cell.length_a 63.406 _cell.length_b 145.885 _cell.length_c 54.904 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8B47 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H22 O6' _chem_comp.formula_weight 238.278 _chem_comp.id 1PE _chem_comp.mon_nstd_flag . _chem_comp.name 'PENTAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PEG400 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OH2 C12 1PE sing 1 n n OH2 HO2 1PE sing 2 n n C12 C22 1PE sing 3 n n C12 H121 1PE sing 4 n n C12 H122 1PE sing 5 n n C22 OH3 1PE sing 6 n n C22 H221 1PE sing 7 n n C22 H222 1PE sing 8 n n OH3 C23 1PE sing 9 n n C13 C23 1PE sing 10 n n C13 OH4 1PE sing 11 n n C13 H131 1PE sing 12 n n C13 H132 1PE sing 13 n n C23 H231 1PE sing 14 n n C23 H232 1PE sing 15 n n OH4 C24 1PE sing 16 n n C14 C24 1PE sing 17 n n C14 OH5 1PE sing 18 n n C14 H141 1PE sing 19 n n C14 H142 1PE sing 20 n n C24 H241 1PE sing 21 n n C24 H242 1PE sing 22 n n OH5 C25 1PE sing 23 n n C15 C25 1PE sing 24 n n C15 OH6 1PE sing 25 n n C15 H151 1PE sing 26 n n C15 H152 1PE sing 27 n n C25 H251 1PE sing 28 n n C25 H252 1PE sing 29 n n OH6 C26 1PE sing 30 n n C16 C26 1PE sing 31 n n C16 OH7 1PE sing 32 n n C16 H161 1PE sing 33 n n C16 H162 1PE sing 34 n n C26 H261 1PE sing 35 n n C26 H262 1PE sing 36 n n OH7 HO7 1PE sing 37 n n # _atom_sites.entry_id 8B47 _atom_sites.fract_transf_matrix[1][1] 0.015771 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006855 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018214 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 OWU A 1 301 267 OWU XXX . D 3 1PE A 1 302 268 1PE 1PE . E 4 PO4 A 1 303 2 PO4 PO4 . F 2 OWU B 1 301 267 OWU XXX . G 4 PO4 B 1 302 1 PO4 PO4 . H 5 HOH A 1 401 46 HOH HOH . H 5 HOH A 2 402 48 HOH HOH . H 5 HOH A 3 403 39 HOH HOH . H 5 HOH A 4 404 29 HOH HOH . H 5 HOH A 5 405 10 HOH HOH . H 5 HOH A 6 406 25 HOH HOH . H 5 HOH A 7 407 55 HOH HOH . H 5 HOH A 8 408 21 HOH HOH . H 5 HOH A 9 409 1 HOH HOH . H 5 HOH A 10 410 12 HOH HOH . H 5 HOH A 11 411 64 HOH HOH . H 5 HOH A 12 412 19 HOH HOH . H 5 HOH A 13 413 53 HOH HOH . H 5 HOH A 14 414 52 HOH HOH . H 5 HOH A 15 415 44 HOH HOH . H 5 HOH A 16 416 77 HOH HOH . H 5 HOH A 17 417 27 HOH HOH . H 5 HOH A 18 418 17 HOH HOH . H 5 HOH A 19 419 61 HOH HOH . H 5 HOH A 20 420 54 HOH HOH . H 5 HOH A 21 421 47 HOH HOH . H 5 HOH A 22 422 42 HOH HOH . H 5 HOH A 23 423 58 HOH HOH . H 5 HOH A 24 424 67 HOH HOH . H 5 HOH A 25 425 11 HOH HOH . H 5 HOH A 26 426 34 HOH HOH . H 5 HOH A 27 427 57 HOH HOH . H 5 HOH A 28 428 62 HOH HOH . H 5 HOH A 29 429 37 HOH HOH . H 5 HOH A 30 430 20 HOH HOH . H 5 HOH A 31 431 3 HOH HOH . H 5 HOH A 32 432 4 HOH HOH . H 5 HOH A 33 433 60 HOH HOH . H 5 HOH A 34 434 43 HOH HOH . H 5 HOH A 35 435 65 HOH HOH . H 5 HOH A 36 436 28 HOH HOH . H 5 HOH A 37 437 51 HOH HOH . H 5 HOH A 38 438 38 HOH HOH . H 5 HOH A 39 439 69 HOH HOH . H 5 HOH A 40 440 66 HOH HOH . I 5 HOH B 1 401 6 HOH HOH . I 5 HOH B 2 402 26 HOH HOH . I 5 HOH B 3 403 49 HOH HOH . I 5 HOH B 4 404 8 HOH HOH . I 5 HOH B 5 405 40 HOH HOH . I 5 HOH B 6 406 23 HOH HOH . I 5 HOH B 7 407 76 HOH HOH . I 5 HOH B 8 408 68 HOH HOH . I 5 HOH B 9 409 24 HOH HOH . I 5 HOH B 10 410 35 HOH HOH . I 5 HOH B 11 411 7 HOH HOH . I 5 HOH B 12 412 63 HOH HOH . I 5 HOH B 13 413 15 HOH HOH . I 5 HOH B 14 414 5 HOH HOH . I 5 HOH B 15 415 36 HOH HOH . I 5 HOH B 16 416 71 HOH HOH . I 5 HOH B 17 417 18 HOH HOH . I 5 HOH B 18 418 50 HOH HOH . I 5 HOH B 19 419 73 HOH HOH . I 5 HOH B 20 420 45 HOH HOH . I 5 HOH B 21 421 56 HOH HOH . I 5 HOH B 22 422 16 HOH HOH . I 5 HOH B 23 423 74 HOH HOH . I 5 HOH B 24 424 9 HOH HOH . I 5 HOH B 25 425 70 HOH HOH . I 5 HOH B 26 426 75 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OH2 1PE . . . D 3 15.14 37.186 1.658 1 89.63 ? OH2 1PE 302 A 1 HETATM 2 C C12 1PE . . . D 3 16.406 36.778 2.155 1 86.57 ? C12 1PE 302 A 1 HETATM 3 C C22 1PE . . . D 3 16.459 35.263 2.164 1 77.64 ? C22 1PE 302 A 1 HETATM 4 O OH3 1PE . . . D 3 17.283 34.709 3.191 1 80.67 ? OH3 1PE 302 A 1 HETATM 5 C C13 1PE . . . D 3 17.783 32.671 1.899 1 70.88 ? C13 1PE 302 A 1 HETATM 6 C C23 1PE . . . D 3 18.302 33.836 2.688 1 76 ? C23 1PE 302 A 1 HETATM 7 O OH4 1PE . . . D 3 18.817 32.169 1.067 1 70.72 ? OH4 1PE 302 A 1 HETATM 8 C C14 1PE . . . D 3 20.248 33.09 -0.453 1 68.54 ? C14 1PE 302 A 1 HETATM 9 C C24 1PE . . . D 3 18.831 32.755 -0.219 1 68.82 ? C24 1PE 302 A 1 HETATM 10 O OH5 1PE . . . D 3 20.448 33.229 -1.844 1 73.72 ? OH5 1PE 302 A 1 HETATM 11 C C15 1PE . . . D 3 19.23 34.517 -3.364 1 71.44 ? C15 1PE 302 A 1 HETATM 12 C C25 1PE . . . D 3 20.137 34.555 -2.185 1 78.55 ? C25 1PE 302 A 1 HETATM 13 O OH6 1PE . . . D 3 18.102 35.326 -3.096 1 71.95 ? OH6 1PE 302 A 1 HETATM 14 C C16 1PE . . . D 3 17.225 37.538 -3.296 1 80.22 ? C16 1PE 302 A 1 HETATM 15 C C26 1PE . . . D 3 18.425 36.674 -3.38 1 79.08 ? C26 1PE 302 A 1 HETATM 16 O OH7 1PE . . . D 3 16.018 36.776 -3.473 1 78.32 ? OH7 1PE 302 A 1 HETATM 17 H HO2 1PE . . . D 3 14.505 36.439 1.813 1 107.69 ? HO2 1PE 302 A 1 HETATM 18 H H121 1PE . . . D 3 16.51 37.23 3.141 1 104.02 ? H121 1PE 302 A 1 HETATM 19 H H122 1PE . . . D 3 17.154 37.243 1.515 1 104.02 ? H122 1PE 302 A 1 HETATM 20 H H221 1PE . . . D 3 15.447 34.877 2.268 1 93.3 ? H221 1PE 302 A 1 HETATM 21 H H222 1PE . . . D 3 16.815 34.92 1.194 1 93.3 ? H222 1PE 302 A 1 HETATM 22 H H131 1PE . . . D 3 17.417 31.9 2.576 1 85.19 ? H131 1PE 302 A 1 HETATM 23 H H132 1PE . . . D 3 16.92 32.978 1.31 1 85.19 ? H132 1PE 302 A 1 HETATM 24 H H231 1PE . . . D 3 18.9 33.459 3.516 1 91.34 ? H231 1PE 302 A 1 HETATM 25 H H232 1PE . . . D 3 18.991 34.402 2.062 1 91.34 ? H232 1PE 302 A 1 HETATM 26 H H141 1PE . . . D 3 20.876 32.308 -0.027 1 82.39 ? H141 1PE 302 A 1 HETATM 27 H H142 1PE . . . D 3 20.494 34.004 0.086 1 82.39 ? H142 1PE 302 A 1 HETATM 28 H H241 1PE . . . D 3 18.453 32.072 -0.978 1 82.72 ? H241 1PE 302 A 1 HETATM 29 H H242 1PE . . . D 3 18.2 33.642 -0.264 1 82.72 ? H242 1PE 302 A 1 HETATM 30 H H151 1PE . . . D 3 18.907 33.501 -3.589 1 85.87 ? H151 1PE 302 A 1 HETATM 31 H H152 1PE . . . D 3 19.729 34.87 -4.265 1 85.87 ? H152 1PE 302 A 1 HETATM 32 H H251 1PE . . . D 3 21.09 35.054 -2.351 1 94.39 ? H251 1PE 302 A 1 HETATM 33 H H252 1PE . . . D 3 19.713 35.005 -1.289 1 94.39 ? H252 1PE 302 A 1 HETATM 34 H H161 1PE . . . D 3 17.281 38.322 -4.05 1 96.4 ? H161 1PE 302 A 1 HETATM 35 H H162 1PE . . . D 3 17.203 38.047 -2.333 1 96.4 ? H162 1PE 302 A 1 HETATM 36 H H261 1PE . . . D 3 19.186 37.038 -2.691 1 95.04 ? H261 1PE 302 A 1 HETATM 37 H H262 1PE . . . D 3 18.867 36.76 -4.372 1 95.04 ? H262 1PE 302 A 1 HETATM 38 H HO7 1PE . . . D 3 15.323 37.172 -2.884 1 94.13 ? HO7 1PE 302 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 38 #