data_8B4A
#
_model_server_result.job_id            '_sl0-xVDs_KQzUgA0RjiJg' 
_model_server_result.datetime_utc      '2024-10-20 20:03:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8b4a 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":301}' 
#
_entry.id    8B4A 
#
_exptl.entry_id    8B4A 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              171.194 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-[(3S)-2-oxotetrahydrofuran-3-yl]butanamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8B4A 
_cell.length_a            159.875 
_cell.length_b            159.875 
_cell.length_c            285.731 
_cell.Z_PDB               32 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8B4A 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        97 
_symmetry.space_group_name_Hall    'I 4 2' 
_symmetry.space_group_name_H-M     'I 4 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 I N N 
? 4 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 86 A HIS 69 1_555 F FE FE . A FE 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? 
metalc ? metalc2 A ND1 HIS 88 A HIS 71 1_555 F FE FE . A FE 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? 
metalc ? metalc3 A OD2 ASP 90 A ASP 73 1_555 E FE FE . A FE 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? 
metalc ? metalc4 A NE2 HIS 91 A HIS 74 1_555 E FE FE . A FE 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? 
metalc ? metalc5 A NE2 HIS 176 A HIS 159 1_555 F FE FE . A FE 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? 
metalc ? metalc6 A OD2 ASP 195 A ASP 178 1_555 E FE FE . A FE 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? 
metalc ? metalc7 A OD2 ASP 195 A ASP 178 1_555 F FE FE . A FE 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? 
metalc ? metalc8 A NE2 HIS 238 A HIS 221 1_555 E FE FE . A FE 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? 
metalc ? metalc9 E FE FE . A FE 601 1_555 K O HOH . A HOH 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? 
metalc ? metalc10 F FE FE . A FE 602 1_555 K O HOH . A HOH 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? 
metalc ? metalc11 B NE2 HIS 86 B HIS 69 1_555 H FE FE . B FE 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? 
metalc ? metalc12 B ND1 HIS 88 B HIS 71 1_555 H FE FE . B FE 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? 
metalc ? metalc13 B OD2 ASP 90 B ASP 73 1_555 G FE FE . B FE 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? 
metalc ? metalc14 B NE2 HIS 91 B HIS 74 1_555 G FE FE . B FE 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? 
metalc ? metalc15 B NE2 HIS 176 B HIS 159 1_555 H FE FE . B FE 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? 
metalc ? metalc16 B OD2 ASP 195 B ASP 178 1_555 G FE FE . B FE 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? 
metalc ? metalc17 B OD2 ASP 195 B ASP 178 1_555 H FE FE . B FE 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? 
metalc ? metalc18 B NE2 HIS 238 B HIS 221 1_555 G FE FE . B FE 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? 
metalc ? metalc19 G FE FE . B FE 601 1_555 L O HOH . B HOH 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? 
metalc ? metalc20 H FE FE . B FE 602 1_555 L O HOH . B HOH 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.981 ? 
#
_chem_comp.formula           'C8 H13 N O3' 
_chem_comp.formula_weight    171.194 
_chem_comp.id                HL4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-[(3S)-2-oxotetrahydrofuran-3-yl]butanamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'N-butyryl-L-homoserine lactone' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 HL4 sing 150 n n 
C1 C5 HL4 sing 151 n n 
C1 N7 HL4 sing 152 n n 
C2 O6 HL4 doub 153 n n 
C2 OAP HL4 sing 154 n n 
C4 C5 HL4 sing 155 n n 
C4 OAP HL4 sing 156 n n 
N7 C8 HL4 sing 157 n n 
C8 O9 HL4 doub 158 n n 
C8 C10 HL4 sing 159 n n 
C10 C11 HL4 sing 160 n n 
C11 C13 HL4 sing 161 n n 
C1 H1 HL4 sing 162 n n 
C4 H4 HL4 sing 163 n n 
C4 H4A HL4 sing 164 n n 
C5 H5 HL4 sing 165 n n 
C5 H5A HL4 sing 166 n n 
N7 HN7 HL4 sing 167 n n 
C10 H10 HL4 sing 168 n n 
C10 H10A HL4 sing 169 n n 
C11 H11 HL4 sing 170 n n 
C11 H11A HL4 sing 171 n n 
C13 H13 HL4 sing 172 n n 
C13 H13A HL4 sing 173 n n 
C13 H13B HL4 sing 174 n n 
#
_atom_sites.entry_id                     8B4A 
_atom_sites.fract_transf_matrix[1][1]    0.006255 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006255 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.0035 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 FE A 1 601 601 FE FE . 
F 3 FE A 1 602 602 FE FE . 
G 3 FE B 1 601 601 FE FE . 
H 3 FE B 1 602 602 FE FE . 
I 4 HL4 C 1 301 301 HL4 HL4 . 
J 4 HL4 D 1 301 301 HL4 HL4 . 
K 5 HOH A 1 701 603 HOH HOH . 
K 5 HOH A 2 702 4 HOH HOH . 
K 5 HOH A 3 703 7 HOH HOH . 
K 5 HOH A 4 704 6 HOH HOH . 
K 5 HOH A 5 705 2 HOH HOH . 
K 5 HOH A 6 706 9 HOH HOH . 
K 5 HOH A 7 707 3 HOH HOH . 
K 5 HOH A 8 708 5 HOH HOH . 
L 5 HOH B 1 701 603 HOH HOH . 
L 5 HOH B 2 702 8 HOH HOH . 
L 5 HOH B 3 703 10 HOH HOH . 
L 5 HOH B 4 704 1 HOH HOH . 
M 5 HOH C 1 401 11 HOH HOH . 
N 5 HOH D 1 401 12 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 HL4 . . . J 4 -52.537 -26.671 -40.095 1 107.42 ? C1 HL4 301 D 1 
HETATM 2 C C2 HL4 . . . J 4 -54.021 -26.365 -40.322 1 109.51 ? C2 HL4 301 D 1 
HETATM 3 C C4 HL4 . . . J 4 -53.48 -25.491 -38.28 1 112.03 ? C4 HL4 301 D 1 
HETATM 4 C C5 HL4 . . . J 4 -52.198 -25.564 -39.109 1 105.72 ? C5 HL4 301 D 1 
HETATM 5 O O6 HL4 . . . J 4 -54.686 -26.549 -41.303 1 110.93 ? O6 HL4 301 D 1 
HETATM 6 N N7 HL4 . . . J 4 -51.815 -26.603 -41.338 1 106.82 ? N7 HL4 301 D 1 
HETATM 7 C C8 HL4 . . . J 4 -51.588 -27.703 -42.094 1 104.14 ? C8 HL4 301 D 1 
HETATM 8 O O9 HL4 . . . J 4 -51.983 -28.809 -41.763 1 103.86 ? O9 HL4 301 D 1 
HETATM 9 C C10 HL4 . . . J 4 -50.811 -27.46 -43.369 1 103.54 ? C10 HL4 301 D 1 
HETATM 10 C C11 HL4 . . . J 4 -50.63 -28.728 -44.189 1 105.15 ? C11 HL4 301 D 1 
HETATM 11 C C13 HL4 . . . J 4 -50.245 -28.423 -45.629 1 102.78 ? C13 HL4 301 D 1 
HETATM 12 O OAP HL4 . . . J 4 -54.524 -25.839 -39.207 1 112.77 ? OAP HL4 301 D 1 
HETATM 13 H H1 HL4 . . . J 4 -52.41 -27.567 -39.745 1 128.9 ? H1 HL4 301 D 1 
HETATM 14 H H4 HL4 . . . J 4 -53.502 -26.125 -37.546 1 134.43 ? H4 HL4 301 D 1 
HETATM 15 H H4A HL4 . . . J 4 -53.665 -24.605 -37.931 1 134.43 ? H4A HL4 301 D 1 
HETATM 16 H H5 HL4 . . . J 4 -51.425 -25.796 -38.572 1 126.86 ? H5 HL4 301 D 1 
HETATM 17 H H5A HL4 . . . J 4 -52.008 -24.73 -39.567 1 126.86 ? H5A HL4 301 D 1 
HETATM 18 H HN7 HL4 . . . J 4 -51.519 -25.842 -41.607 1 128.19 ? HN7 HL4 301 D 1 
HETATM 19 H H10 HL4 . . . J 4 -51.267 -26.782 -43.891 1 124.25 ? H10 HL4 301 D 1 
HETATM 20 H H10A HL4 . . . J 4 -49.948 -27.078 -43.143 1 124.25 ? H10A HL4 301 D 1 
HETATM 21 H H11 HL4 . . . J 4 -49.948 -29.285 -43.783 1 126.18 ? H11 HL4 301 D 1 
HETATM 22 H H11A HL4 . . . J 4 -51.451 -29.245 -44.176 1 126.18 ? H11A HL4 301 D 1 
HETATM 23 H H13 HL4 . . . J 4 -50.776 -27.697 -45.991 1 123.33 ? H13 HL4 301 D 1 
HETATM 24 H H13A HL4 . . . J 4 -50.378 -29.195 -46.202 1 123.33 ? H13A HL4 301 D 1 
HETATM 25 H H13B HL4 . . . J 4 -49.313 -28.165 -45.699 1 123.33 ? H13B HL4 301 D 1 
#
_model_server_stats.io_time_ms              44 
_model_server_stats.parse_time_ms           24 
_model_server_stats.create_model_time_ms    44 
_model_server_stats.query_time_ms           263 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           25 
#