data_8B4U
#
_model_server_result.job_id            beqGOGSQYHbT-flJPscFtA 
_model_server_result.datetime_utc      '2024-10-19 11:44:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8b4u 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"U","auth_seq_id":320}' 
#
_entry.id    8B4U 
#
_exptl.entry_id    8B4U 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    20 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8B4U 
_cell.length_a            79.292 
_cell.length_b            79.292 
_cell.length_c            171.546 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8B4U 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    'P 61 2 (x,y,z+5/12)' 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
? 2 O N N 
? 2 P N N 
? 2 Q N N 
? 2 R N N 
? 2 S N N 
? 2 T N N 
? 2 U N N 
#
_struct_conn.conn_type_id                   disulf 
_struct_conn.details                        ? 
_struct_conn.id                             disulf1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            SG 
_struct_conn.ptnr1_label_comp_id            CYS 
_struct_conn.ptnr1_label_seq_id             89 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             CYS 
_struct_conn.ptnr1_auth_seq_id              89 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            A 
_struct_conn.ptnr2_label_atom_id            SG 
_struct_conn.ptnr2_label_comp_id            CYS 
_struct_conn.ptnr2_label_seq_id             89 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             CYS 
_struct_conn.ptnr2_auth_seq_id              89 
_struct_conn.ptnr2_symmetry                 12_575 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                2.13 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     8B4U 
_atom_sites.fract_transf_matrix[1][1]    0.012612 
_atom_sites.fract_transf_matrix[1][2]    0.007281 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014563 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005829 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 EDO A 1 301 301 EDO EDO . 
C 2 EDO A 1 302 401 EDO EDO . 
D 2 EDO A 1 303 501 EDO EDO . 
E 2 EDO A 1 304 601 EDO EDO . 
F 2 EDO A 1 305 801 EDO EDO . 
G 2 EDO A 1 306 901 EDO EDO . 
H 2 EDO A 1 307 1201 EDO EDO . 
I 2 EDO A 1 308 1401 EDO EDO . 
J 2 EDO A 1 309 1501 EDO EDO . 
K 2 EDO A 1 310 1601 EDO EDO . 
L 2 EDO A 1 311 1701 EDO EDO . 
M 2 EDO A 1 312 1801 EDO EDO . 
N 2 EDO A 1 313 1901 EDO EDO . 
O 2 EDO A 1 314 2001 EDO EDO . 
P 2 EDO A 1 315 2101 EDO EDO . 
Q 2 EDO A 1 316 2201 EDO EDO . 
R 2 EDO A 1 317 2401 EDO EDO . 
S 2 EDO A 1 318 2501 EDO EDO . 
T 2 EDO A 1 319 2601 EDO EDO . 
U 2 EDO A 1 320 2701 EDO EDO . 
V 3 PO4 A 1 321 2 PO4 PO4 . 
W 3 PO4 A 1 322 3 PO4 PO4 . 
X 3 PO4 A 1 323 4 PO4 PO4 . 
Y 3 PO4 A 1 324 5 PO4 PO4 . 
Z 4 CL A 1 325 1 CL CL . 
AA 5 HOH A 1 401 38 HOH HOH . 
AA 5 HOH A 2 402 206 HOH HOH . 
AA 5 HOH A 3 403 122 HOH HOH . 
AA 5 HOH A 4 404 39 HOH HOH . 
AA 5 HOH A 5 405 26 HOH HOH . 
AA 5 HOH A 6 406 219 HOH HOH . 
AA 5 HOH A 7 407 222 HOH HOH . 
AA 5 HOH A 8 408 169 HOH HOH . 
AA 5 HOH A 9 409 29 HOH HOH . 
AA 5 HOH A 10 410 217 HOH HOH . 
AA 5 HOH A 11 411 12 HOH HOH . 
AA 5 HOH A 12 412 207 HOH HOH . 
AA 5 HOH A 13 413 23 HOH HOH . 
AA 5 HOH A 14 414 196 HOH HOH . 
AA 5 HOH A 15 415 6 HOH HOH . 
AA 5 HOH A 16 416 138 HOH HOH . 
AA 5 HOH A 17 417 195 HOH HOH . 
AA 5 HOH A 18 418 173 HOH HOH . 
AA 5 HOH A 19 419 224 HOH HOH . 
AA 5 HOH A 20 420 202 HOH HOH . 
AA 5 HOH A 21 421 20 HOH HOH . 
AA 5 HOH A 22 422 8 HOH HOH . 
AA 5 HOH A 23 423 4 HOH HOH . 
AA 5 HOH A 24 424 134 HOH HOH . 
AA 5 HOH A 25 425 105 HOH HOH . 
AA 5 HOH A 26 426 110 HOH HOH . 
AA 5 HOH A 27 427 60 HOH HOH . 
AA 5 HOH A 28 428 72 HOH HOH . 
AA 5 HOH A 29 429 32 HOH HOH . 
AA 5 HOH A 30 430 80 HOH HOH . 
AA 5 HOH A 31 431 40 HOH HOH . 
AA 5 HOH A 32 432 151 HOH HOH . 
AA 5 HOH A 33 433 5 HOH HOH . 
AA 5 HOH A 34 434 59 HOH HOH . 
AA 5 HOH A 35 435 73 HOH HOH . 
AA 5 HOH A 36 436 2 HOH HOH . 
AA 5 HOH A 37 437 112 HOH HOH . 
AA 5 HOH A 38 438 9 HOH HOH . 
AA 5 HOH A 39 439 100 HOH HOH . 
AA 5 HOH A 40 440 1 HOH HOH . 
AA 5 HOH A 41 441 87 HOH HOH . 
AA 5 HOH A 42 442 103 HOH HOH . 
AA 5 HOH A 43 443 65 HOH HOH . 
AA 5 HOH A 44 444 36 HOH HOH . 
AA 5 HOH A 45 445 11 HOH HOH . 
AA 5 HOH A 46 446 16 HOH HOH . 
AA 5 HOH A 47 447 98 HOH HOH . 
AA 5 HOH A 48 448 106 HOH HOH . 
AA 5 HOH A 49 449 94 HOH HOH . 
AA 5 HOH A 50 450 47 HOH HOH . 
AA 5 HOH A 51 451 58 HOH HOH . 
AA 5 HOH A 52 452 91 HOH HOH . 
AA 5 HOH A 53 453 185 HOH HOH . 
AA 5 HOH A 54 454 96 HOH HOH . 
AA 5 HOH A 55 455 19 HOH HOH . 
AA 5 HOH A 56 456 64 HOH HOH . 
AA 5 HOH A 57 457 17 HOH HOH . 
AA 5 HOH A 58 458 3 HOH HOH . 
AA 5 HOH A 59 459 81 HOH HOH . 
AA 5 HOH A 60 460 46 HOH HOH . 
AA 5 HOH A 61 461 22 HOH HOH . 
AA 5 HOH A 62 462 124 HOH HOH . 
AA 5 HOH A 63 463 153 HOH HOH . 
AA 5 HOH A 64 464 55 HOH HOH . 
AA 5 HOH A 65 465 161 HOH HOH . 
AA 5 HOH A 66 466 24 HOH HOH . 
AA 5 HOH A 67 467 7 HOH HOH . 
AA 5 HOH A 68 468 30 HOH HOH . 
AA 5 HOH A 69 469 194 HOH HOH . 
AA 5 HOH A 70 470 137 HOH HOH . 
AA 5 HOH A 71 471 37 HOH HOH . 
AA 5 HOH A 72 472 66 HOH HOH . 
AA 5 HOH A 73 473 10 HOH HOH . 
AA 5 HOH A 74 474 127 HOH HOH . 
AA 5 HOH A 75 475 21 HOH HOH . 
AA 5 HOH A 76 476 210 HOH HOH . 
AA 5 HOH A 77 477 15 HOH HOH . 
AA 5 HOH A 78 478 34 HOH HOH . 
AA 5 HOH A 79 479 221 HOH HOH . 
AA 5 HOH A 80 480 133 HOH HOH . 
AA 5 HOH A 81 481 67 HOH HOH . 
AA 5 HOH A 82 482 101 HOH HOH . 
AA 5 HOH A 83 483 68 HOH HOH . 
AA 5 HOH A 84 484 227 HOH HOH . 
AA 5 HOH A 85 485 75 HOH HOH . 
AA 5 HOH A 86 486 135 HOH HOH . 
AA 5 HOH A 87 487 132 HOH HOH . 
AA 5 HOH A 88 488 172 HOH HOH . 
AA 5 HOH A 89 489 13 HOH HOH . 
AA 5 HOH A 90 490 97 HOH HOH . 
AA 5 HOH A 91 491 62 HOH HOH . 
AA 5 HOH A 92 492 31 HOH HOH . 
AA 5 HOH A 93 493 92 HOH HOH . 
AA 5 HOH A 94 494 113 HOH HOH . 
AA 5 HOH A 95 495 71 HOH HOH . 
AA 5 HOH A 96 496 107 HOH HOH . 
AA 5 HOH A 97 497 187 HOH HOH . 
AA 5 HOH A 98 498 102 HOH HOH . 
AA 5 HOH A 99 499 41 HOH HOH . 
AA 5 HOH A 100 500 28 HOH HOH . 
AA 5 HOH A 101 501 49 HOH HOH . 
AA 5 HOH A 102 502 90 HOH HOH . 
AA 5 HOH A 103 503 235 HOH HOH . 
AA 5 HOH A 104 504 88 HOH HOH . 
AA 5 HOH A 105 505 79 HOH HOH . 
AA 5 HOH A 106 506 179 HOH HOH . 
AA 5 HOH A 107 507 123 HOH HOH . 
AA 5 HOH A 108 508 51 HOH HOH . 
AA 5 HOH A 109 509 171 HOH HOH . 
AA 5 HOH A 110 510 25 HOH HOH . 
AA 5 HOH A 111 511 57 HOH HOH . 
AA 5 HOH A 112 512 146 HOH HOH . 
AA 5 HOH A 113 513 147 HOH HOH . 
AA 5 HOH A 114 514 117 HOH HOH . 
AA 5 HOH A 115 515 109 HOH HOH . 
AA 5 HOH A 116 516 48 HOH HOH . 
AA 5 HOH A 117 517 42 HOH HOH . 
AA 5 HOH A 118 518 111 HOH HOH . 
AA 5 HOH A 119 519 33 HOH HOH . 
AA 5 HOH A 120 520 199 HOH HOH . 
AA 5 HOH A 121 521 231 HOH HOH . 
AA 5 HOH A 122 522 125 HOH HOH . 
AA 5 HOH A 123 523 56 HOH HOH . 
AA 5 HOH A 124 524 70 HOH HOH . 
AA 5 HOH A 125 525 128 HOH HOH . 
AA 5 HOH A 126 526 139 HOH HOH . 
AA 5 HOH A 127 527 52 HOH HOH . 
AA 5 HOH A 128 528 44 HOH HOH . 
AA 5 HOH A 129 529 50 HOH HOH . 
AA 5 HOH A 130 530 83 HOH HOH . 
AA 5 HOH A 131 531 218 HOH HOH . 
AA 5 HOH A 132 532 211 HOH HOH . 
AA 5 HOH A 133 533 126 HOH HOH . 
AA 5 HOH A 134 534 53 HOH HOH . 
AA 5 HOH A 135 535 78 HOH HOH . 
AA 5 HOH A 136 536 149 HOH HOH . 
AA 5 HOH A 137 537 150 HOH HOH . 
AA 5 HOH A 138 538 170 HOH HOH . 
AA 5 HOH A 139 539 104 HOH HOH . 
AA 5 HOH A 140 540 181 HOH HOH . 
AA 5 HOH A 141 541 136 HOH HOH . 
AA 5 HOH A 142 542 167 HOH HOH . 
AA 5 HOH A 143 543 74 HOH HOH . 
AA 5 HOH A 144 544 180 HOH HOH . 
AA 5 HOH A 145 545 201 HOH HOH . 
AA 5 HOH A 146 546 177 HOH HOH . 
AA 5 HOH A 147 547 205 HOH HOH . 
AA 5 HOH A 148 548 182 HOH HOH . 
AA 5 HOH A 149 549 200 HOH HOH . 
AA 5 HOH A 150 550 119 HOH HOH . 
AA 5 HOH A 151 551 144 HOH HOH . 
AA 5 HOH A 152 552 192 HOH HOH . 
AA 5 HOH A 153 553 215 HOH HOH . 
AA 5 HOH A 154 554 163 HOH HOH . 
AA 5 HOH A 155 555 188 HOH HOH . 
AA 5 HOH A 156 556 223 HOH HOH . 
AA 5 HOH A 157 557 99 HOH HOH . 
AA 5 HOH A 158 558 148 HOH HOH . 
AA 5 HOH A 159 559 157 HOH HOH . 
AA 5 HOH A 160 560 198 HOH HOH . 
AA 5 HOH A 161 561 212 HOH HOH . 
AA 5 HOH A 162 562 209 HOH HOH . 
AA 5 HOH A 163 563 203 HOH HOH . 
AA 5 HOH A 164 564 89 HOH HOH . 
AA 5 HOH A 165 565 77 HOH HOH . 
AA 5 HOH A 166 566 184 HOH HOH . 
AA 5 HOH A 167 567 162 HOH HOH . 
AA 5 HOH A 168 568 204 HOH HOH . 
AA 5 HOH A 169 569 165 HOH HOH . 
AA 5 HOH A 170 570 233 HOH HOH . 
AA 5 HOH A 171 571 86 HOH HOH . 
AA 5 HOH A 172 572 108 HOH HOH . 
AA 5 HOH A 173 573 193 HOH HOH . 
AA 5 HOH A 174 574 115 HOH HOH . 
AA 5 HOH A 175 575 114 HOH HOH . 
AA 5 HOH A 176 576 141 HOH HOH . 
AA 5 HOH A 177 577 214 HOH HOH . 
AA 5 HOH A 178 578 158 HOH HOH . 
AA 5 HOH A 179 579 229 HOH HOH . 
AA 5 HOH A 180 580 120 HOH HOH . 
AA 5 HOH A 181 581 197 HOH HOH . 
AA 5 HOH A 182 582 176 HOH HOH . 
AA 5 HOH A 183 583 61 HOH HOH . 
AA 5 HOH A 184 584 116 HOH HOH . 
AA 5 HOH A 185 585 213 HOH HOH . 
AA 5 HOH A 186 586 85 HOH HOH . 
AA 5 HOH A 187 587 143 HOH HOH . 
AA 5 HOH A 188 588 166 HOH HOH . 
AA 5 HOH A 189 589 230 HOH HOH . 
AA 5 HOH A 190 590 216 HOH HOH . 
AA 5 HOH A 191 591 93 HOH HOH . 
AA 5 HOH A 192 592 189 HOH HOH . 
AA 5 HOH A 193 593 152 HOH HOH . 
AA 5 HOH A 194 594 190 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . U 2 -1.288 53.526 8.689 1 85.01 ? C1 EDO 320 A 1 
HETATM 2 O O1 EDO . . . U 2 -2.68 53.538 8.597 1 81.29 ? O1 EDO 320 A 1 
HETATM 3 C C2 EDO . . . U 2 -0.583 53.37 7.416 1 78.17 ? C2 EDO 320 A 1 
HETATM 4 O O2 EDO . . . U 2 -1.395 53.628 6.308 1 90.6 ? O2 EDO 320 A 1 
HETATM 5 H H11 EDO . . . U 2 -1.022 52.793 9.282 1 102.03 ? H11 EDO 320 A 1 
HETATM 6 H H12 EDO . . . U 2 -0.996 54.365 9.103 1 102.03 ? H12 EDO 320 A 1 
HETATM 7 H HO1 EDO . . . U 2 -2.975 52.751 8.693 1 97.57 ? HO1 EDO 320 A 1 
HETATM 8 H H21 EDO . . . U 2 -0.241 52.454 7.354 1 93.83 ? H21 EDO 320 A 1 
HETATM 9 H H22 EDO . . . U 2 0.182 53.982 7.4 1 93.83 ? H22 EDO 320 A 1 
HETATM 10 H HO2 EDO . . . U 2 -2.194 53.729 6.564 1 108.74 ? HO2 EDO 320 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           280 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           10 
#