data_8B51 # _model_server_result.job_id YuAuZUgVY0avw2eTPsZ4RQ _model_server_result.datetime_utc '2025-09-13 15:02:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8b51 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 8B51 # _exptl.entry_id 8B51 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 381.387 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description SINEFUNGIN _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8B51 _cell.length_a 52.911 _cell.length_b 95.546 _cell.length_c 110.431 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8B51 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C15 H23 N7 O5' _chem_comp.formula_weight 381.387 _chem_comp.id SFG _chem_comp.mon_nstd_flag . _chem_comp.name SINEFUNGIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ADENOSYL-ORNITHINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SFG sing 303 n n N HN1 SFG sing 304 n n N HN2 SFG sing 305 n n CA C SFG sing 306 n n CA CB SFG sing 307 n n CA HA SFG sing 308 n n C O SFG doub 309 n n C OXT SFG sing 310 n n OXT HXT SFG sing 311 n n CB CG SFG sing 312 n n CB HB1 SFG sing 313 n n CB HB2 SFG sing 314 n n CG CD SFG sing 315 n n CG HG1 SFG sing 316 n n CG HG2 SFG sing 317 n n CD NE SFG sing 318 n n CD C5' SFG sing 319 n n CD HD SFG sing 320 n n NE HNE1 SFG sing 321 n n NE HNE2 SFG sing 322 n n C5' C4' SFG sing 323 n n C5' "H5'1" SFG sing 324 n n C5' "H5'2" SFG sing 325 n n C4' O4' SFG sing 326 n n C4' C3' SFG sing 327 n n C4' H4' SFG sing 328 n n O4' C1' SFG sing 329 n n C3' O3' SFG sing 330 n n C3' C2' SFG sing 331 n n C3' H3' SFG sing 332 n n O3' HO3' SFG sing 333 n n C2' O2' SFG sing 334 n n C2' C1' SFG sing 335 n n C2' H2' SFG sing 336 n n O2' HO2' SFG sing 337 n n C1' N9 SFG sing 338 n n C1' H1' SFG sing 339 n n N9 C8 SFG sing 340 n y N9 C4 SFG sing 341 n y C8 N7 SFG doub 342 n y C8 H8 SFG sing 343 n n N7 C5 SFG sing 344 n y C5 C6 SFG sing 345 n y C5 C4 SFG doub 346 n y C6 N6 SFG sing 347 n n C6 N1 SFG doub 348 n y N6 HN61 SFG sing 349 n n N6 HN62 SFG sing 350 n n N1 C2 SFG sing 351 n y C2 N3 SFG doub 352 n y C2 H2 SFG sing 353 n n N3 C4 SFG sing 354 n y # _atom_sites.entry_id 8B51 _atom_sites.fract_transf_matrix[1][1] 0.0189 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010466 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009055 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SFG A 1 301 302 SFG SFG . D 3 GOL A 1 302 303 GOL GOL . E 2 SFG B 1 301 302 SFG SFG . F 4 GLY B 1 302 303 GLY GLY . G 5 HOH A 1 401 201 HOH HOH . G 5 HOH A 2 402 213 HOH HOH . G 5 HOH A 3 403 147 HOH HOH . G 5 HOH A 4 404 41 HOH HOH . G 5 HOH A 5 405 163 HOH HOH . G 5 HOH A 6 406 164 HOH HOH . G 5 HOH A 7 407 146 HOH HOH . G 5 HOH A 8 408 65 HOH HOH . G 5 HOH A 9 409 11 HOH HOH . G 5 HOH A 10 410 12 HOH HOH . G 5 HOH A 11 411 208 HOH HOH . G 5 HOH A 12 412 71 HOH HOH . G 5 HOH A 13 413 135 HOH HOH . G 5 HOH A 14 414 76 HOH HOH . G 5 HOH A 15 415 67 HOH HOH . G 5 HOH A 16 416 66 HOH HOH . G 5 HOH A 17 417 24 HOH HOH . G 5 HOH A 18 418 49 HOH HOH . G 5 HOH A 19 419 25 HOH HOH . G 5 HOH A 20 420 70 HOH HOH . G 5 HOH A 21 421 30 HOH HOH . G 5 HOH A 22 422 168 HOH HOH . G 5 HOH A 23 423 43 HOH HOH . G 5 HOH A 24 424 35 HOH HOH . G 5 HOH A 25 425 50 HOH HOH . G 5 HOH A 26 426 36 HOH HOH . G 5 HOH A 27 427 26 HOH HOH . G 5 HOH A 28 428 77 HOH HOH . G 5 HOH A 29 429 32 HOH HOH . G 5 HOH A 30 430 4 HOH HOH . G 5 HOH A 31 431 78 HOH HOH . G 5 HOH A 32 432 27 HOH HOH . G 5 HOH A 33 433 20 HOH HOH . G 5 HOH A 34 434 167 HOH HOH . G 5 HOH A 35 435 2 HOH HOH . G 5 HOH A 36 436 6 HOH HOH . G 5 HOH A 37 437 7 HOH HOH . G 5 HOH A 38 438 42 HOH HOH . G 5 HOH A 39 439 5 HOH HOH . G 5 HOH A 40 440 14 HOH HOH . G 5 HOH A 41 441 79 HOH HOH . G 5 HOH A 42 442 178 HOH HOH . G 5 HOH A 43 443 161 HOH HOH . G 5 HOH A 44 444 16 HOH HOH . G 5 HOH A 45 445 214 HOH HOH . G 5 HOH A 46 446 75 HOH HOH . G 5 HOH A 47 447 56 HOH HOH . G 5 HOH A 48 448 39 HOH HOH . G 5 HOH A 49 449 13 HOH HOH . G 5 HOH A 50 450 15 HOH HOH . G 5 HOH A 51 451 59 HOH HOH . G 5 HOH A 52 452 194 HOH HOH . G 5 HOH A 53 453 63 HOH HOH . G 5 HOH A 54 454 86 HOH HOH . G 5 HOH A 55 455 83 HOH HOH . G 5 HOH A 56 456 64 HOH HOH . G 5 HOH A 57 457 48 HOH HOH . G 5 HOH A 58 458 68 HOH HOH . G 5 HOH A 59 459 28 HOH HOH . G 5 HOH A 60 460 219 HOH HOH . G 5 HOH A 61 461 45 HOH HOH . G 5 HOH A 62 462 81 HOH HOH . G 5 HOH A 63 463 62 HOH HOH . G 5 HOH A 64 464 54 HOH HOH . G 5 HOH A 65 465 173 HOH HOH . G 5 HOH A 66 466 155 HOH HOH . G 5 HOH A 67 467 17 HOH HOH . G 5 HOH A 68 468 72 HOH HOH . G 5 HOH A 69 469 10 HOH HOH . G 5 HOH A 70 470 110 HOH HOH . G 5 HOH A 71 471 138 HOH HOH . G 5 HOH A 72 472 149 HOH HOH . G 5 HOH A 73 473 3 HOH HOH . G 5 HOH A 74 474 222 HOH HOH . G 5 HOH A 75 475 187 HOH HOH . G 5 HOH A 76 476 37 HOH HOH . G 5 HOH A 77 477 197 HOH HOH . G 5 HOH A 78 478 47 HOH HOH . G 5 HOH A 79 479 82 HOH HOH . G 5 HOH A 80 480 145 HOH HOH . G 5 HOH A 81 481 84 HOH HOH . G 5 HOH A 82 482 74 HOH HOH . G 5 HOH A 83 483 23 HOH HOH . G 5 HOH A 84 484 80 HOH HOH . G 5 HOH A 85 485 40 HOH HOH . G 5 HOH A 86 486 31 HOH HOH . G 5 HOH A 87 487 51 HOH HOH . G 5 HOH A 88 488 55 HOH HOH . G 5 HOH A 89 489 69 HOH HOH . G 5 HOH A 90 490 170 HOH HOH . G 5 HOH A 91 491 122 HOH HOH . G 5 HOH A 92 492 182 HOH HOH . G 5 HOH A 93 493 18 HOH HOH . G 5 HOH A 94 494 186 HOH HOH . G 5 HOH A 95 495 61 HOH HOH . G 5 HOH A 96 496 181 HOH HOH . G 5 HOH A 97 497 179 HOH HOH . G 5 HOH A 98 498 8 HOH HOH . G 5 HOH A 99 499 91 HOH HOH . G 5 HOH A 100 500 87 HOH HOH . G 5 HOH A 101 501 220 HOH HOH . G 5 HOH A 102 502 218 HOH HOH . G 5 HOH A 103 503 174 HOH HOH . G 5 HOH A 104 504 200 HOH HOH . G 5 HOH A 105 505 118 HOH HOH . G 5 HOH A 106 506 57 HOH HOH . G 5 HOH A 107 507 160 HOH HOH . G 5 HOH A 108 508 85 HOH HOH . G 5 HOH A 109 509 156 HOH HOH . G 5 HOH A 110 510 169 HOH HOH . G 5 HOH A 111 511 215 HOH HOH . G 5 HOH A 112 512 34 HOH HOH . G 5 HOH A 113 513 172 HOH HOH . G 5 HOH A 114 514 52 HOH HOH . G 5 HOH A 115 515 216 HOH HOH . G 5 HOH A 116 516 136 HOH HOH . G 5 HOH A 117 517 29 HOH HOH . G 5 HOH A 118 518 44 HOH HOH . G 5 HOH A 119 519 33 HOH HOH . G 5 HOH A 120 520 73 HOH HOH . G 5 HOH A 121 521 162 HOH HOH . G 5 HOH A 122 522 166 HOH HOH . G 5 HOH A 123 523 38 HOH HOH . G 5 HOH A 124 524 1 HOH HOH . G 5 HOH A 125 525 46 HOH HOH . G 5 HOH A 126 526 198 HOH HOH . G 5 HOH A 127 527 53 HOH HOH . G 5 HOH A 128 528 180 HOH HOH . G 5 HOH A 129 529 19 HOH HOH . G 5 HOH A 130 530 22 HOH HOH . G 5 HOH A 131 531 60 HOH HOH . G 5 HOH A 132 532 9 HOH HOH . G 5 HOH A 133 533 58 HOH HOH . G 5 HOH A 134 534 207 HOH HOH . G 5 HOH A 135 535 171 HOH HOH . G 5 HOH A 136 536 124 HOH HOH . G 5 HOH A 137 537 21 HOH HOH . H 5 HOH B 1 401 151 HOH HOH . H 5 HOH B 2 402 202 HOH HOH . H 5 HOH B 3 403 121 HOH HOH . H 5 HOH B 4 404 196 HOH HOH . H 5 HOH B 5 405 126 HOH HOH . H 5 HOH B 6 406 115 HOH HOH . H 5 HOH B 7 407 206 HOH HOH . H 5 HOH B 8 408 148 HOH HOH . H 5 HOH B 9 409 203 HOH HOH . H 5 HOH B 10 410 158 HOH HOH . H 5 HOH B 11 411 221 HOH HOH . H 5 HOH B 12 412 97 HOH HOH . H 5 HOH B 13 413 103 HOH HOH . H 5 HOH B 14 414 105 HOH HOH . H 5 HOH B 15 415 106 HOH HOH . H 5 HOH B 16 416 99 HOH HOH . H 5 HOH B 17 417 100 HOH HOH . H 5 HOH B 18 418 137 HOH HOH . H 5 HOH B 19 419 120 HOH HOH . H 5 HOH B 20 420 117 HOH HOH . H 5 HOH B 21 421 88 HOH HOH . H 5 HOH B 22 422 195 HOH HOH . H 5 HOH B 23 423 153 HOH HOH . H 5 HOH B 24 424 107 HOH HOH . H 5 HOH B 25 425 101 HOH HOH . H 5 HOH B 26 426 93 HOH HOH . H 5 HOH B 27 427 111 HOH HOH . H 5 HOH B 28 428 190 HOH HOH . H 5 HOH B 29 429 89 HOH HOH . H 5 HOH B 30 430 157 HOH HOH . H 5 HOH B 31 431 92 HOH HOH . H 5 HOH B 32 432 133 HOH HOH . H 5 HOH B 33 433 129 HOH HOH . H 5 HOH B 34 434 90 HOH HOH . H 5 HOH B 35 435 116 HOH HOH . H 5 HOH B 36 436 114 HOH HOH . H 5 HOH B 37 437 134 HOH HOH . H 5 HOH B 38 438 139 HOH HOH . H 5 HOH B 39 439 125 HOH HOH . H 5 HOH B 40 440 123 HOH HOH . H 5 HOH B 41 441 96 HOH HOH . H 5 HOH B 42 442 191 HOH HOH . H 5 HOH B 43 443 128 HOH HOH . H 5 HOH B 44 444 119 HOH HOH . H 5 HOH B 45 445 104 HOH HOH . H 5 HOH B 46 446 193 HOH HOH . H 5 HOH B 47 447 95 HOH HOH . H 5 HOH B 48 448 98 HOH HOH . H 5 HOH B 49 449 159 HOH HOH . H 5 HOH B 50 450 102 HOH HOH . H 5 HOH B 51 451 188 HOH HOH . H 5 HOH B 52 452 199 HOH HOH . H 5 HOH B 53 453 184 HOH HOH . H 5 HOH B 54 454 94 HOH HOH . H 5 HOH B 55 455 211 HOH HOH . H 5 HOH B 56 456 175 HOH HOH . H 5 HOH B 57 457 130 HOH HOH . H 5 HOH B 58 458 185 HOH HOH . H 5 HOH B 59 459 108 HOH HOH . H 5 HOH B 60 460 209 HOH HOH . H 5 HOH B 61 461 140 HOH HOH . H 5 HOH B 62 462 144 HOH HOH . H 5 HOH B 63 463 109 HOH HOH . H 5 HOH B 64 464 205 HOH HOH . H 5 HOH B 65 465 183 HOH HOH . H 5 HOH B 66 466 112 HOH HOH . H 5 HOH B 67 467 142 HOH HOH . H 5 HOH B 68 468 176 HOH HOH . H 5 HOH B 69 469 132 HOH HOH . H 5 HOH B 70 470 154 HOH HOH . H 5 HOH B 71 471 150 HOH HOH . H 5 HOH B 72 472 131 HOH HOH . H 5 HOH B 73 473 113 HOH HOH . H 5 HOH B 74 474 127 HOH HOH . H 5 HOH B 75 475 143 HOH HOH . H 5 HOH B 76 476 189 HOH HOH . H 5 HOH B 77 477 141 HOH HOH . H 5 HOH B 78 478 217 HOH HOH . H 5 HOH B 79 479 177 HOH HOH . H 5 HOH B 80 480 210 HOH HOH . H 5 HOH B 81 481 212 HOH HOH . H 5 HOH B 82 482 204 HOH HOH . H 5 HOH B 83 483 152 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SFG . . . E 2 15.136 2.419 -32.859 1 18.03 ? N SFG 301 B 1 HETATM 2 C CA SFG . . . E 2 15.36 2.3 -31.412 1 18.94 ? CA SFG 301 B 1 HETATM 3 C C SFG . . . E 2 14.522 1.121 -30.9 1 21.04 ? C SFG 301 B 1 HETATM 4 O O SFG . . . E 2 13.776 0.439 -31.655 1 22.41 ? O SFG 301 B 1 HETATM 5 O OXT SFG . . . E 2 14.566 0.821 -29.684 1 20.11 ? OXT SFG 301 B 1 HETATM 6 C CB SFG . . . E 2 14.986 3.57 -30.671 1 18.89 ? CB SFG 301 B 1 HETATM 7 C CG SFG . . . E 2 16.012 4.638 -31.07 1 23.28 ? CG SFG 301 B 1 HETATM 8 C CD SFG . . . E 2 15.615 6.013 -30.499 1 17.71 ? CD SFG 301 B 1 HETATM 9 N NE SFG . . . E 2 14.313 6.404 -31.075 1 21.42 ? NE SFG 301 B 1 HETATM 10 C C5' SFG . . . E 2 16.722 7.028 -30.806 1 19.88 ? C5' SFG 301 B 1 HETATM 11 C C4' SFG . . . E 2 18.048 6.767 -30.04 1 19.03 ? C4' SFG 301 B 1 HETATM 12 O O4' SFG . . . E 2 19.02 7.483 -30.555 1 18.14 ? O4' SFG 301 B 1 HETATM 13 C C3' SFG . . . E 2 17.899 7.26 -28.593 1 18.3 ? C3' SFG 301 B 1 HETATM 14 O O3' SFG . . . E 2 18.09 6.235 -27.71 1 19.29 ? O3' SFG 301 B 1 HETATM 15 C C2' SFG . . . E 2 19.067 8.302 -28.49 1 19.7 ? C2' SFG 301 B 1 HETATM 16 O O2' SFG . . . E 2 19.619 8.171 -27.102 1 18.07 ? O2' SFG 301 B 1 HETATM 17 C C1' SFG . . . E 2 19.961 7.975 -29.384 1 17.03 ? C1' SFG 301 B 1 HETATM 18 N N9 SFG . . . E 2 20.684 9.161 -29.791 1 17.79 ? N9 SFG 301 B 1 HETATM 19 C C8 SFG . . . E 2 20.353 10.446 -29.75 1 19.09 ? C8 SFG 301 B 1 HETATM 20 N N7 SFG . . . E 2 21.379 11.175 -30.212 1 20.54 ? N7 SFG 301 B 1 HETATM 21 C C5 SFG . . . E 2 22.336 10.338 -30.54 1 18.77 ? C5 SFG 301 B 1 HETATM 22 C C6 SFG . . . E 2 23.581 10.56 -31.056 1 19.99 ? C6 SFG 301 B 1 HETATM 23 N N6 SFG . . . E 2 24.223 11.81 -31.386 1 24.41 ? N6 SFG 301 B 1 HETATM 24 N N1 SFG . . . E 2 24.401 9.555 -31.307 1 18.27 ? N1 SFG 301 B 1 HETATM 25 C C2 SFG . . . E 2 23.955 8.314 -31.011 1 20.72 ? C2 SFG 301 B 1 HETATM 26 N N3 SFG . . . E 2 22.733 8.091 -30.491 1 18.14 ? N3 SFG 301 B 1 HETATM 27 C C4 SFG . . . E 2 21.916 9.101 -30.258 1 17.95 ? C4 SFG 301 B 1 # _model_server_stats.io_time_ms 31 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 393 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 27 #