data_8B52 # _model_server_result.job_id yjUcpDHo64uf7TsRAnDCXg _model_server_result.datetime_utc '2024-10-19 10:16:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8b52 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 8B52 # _exptl.entry_id 8B52 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8B52 _cell.length_a 53.294 _cell.length_b 95.643 _cell.length_c 110.424 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8B52 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,H 1 1 B,F,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 290 n n N HN1 SAH sing 291 n n N HN2 SAH sing 292 n n CA CB SAH sing 293 n n CA C SAH sing 294 n n CA HA SAH sing 295 n n CB CG SAH sing 296 n n CB HB1 SAH sing 297 n n CB HB2 SAH sing 298 n n CG SD SAH sing 299 n n CG HG1 SAH sing 300 n n CG HG2 SAH sing 301 n n SD C5' SAH sing 302 n n C O SAH doub 303 n n C OXT SAH sing 304 n n OXT HXT SAH sing 305 n n C5' C4' SAH sing 306 n n C5' "H5'1" SAH sing 307 n n C5' "H5'2" SAH sing 308 n n C4' O4' SAH sing 309 n n C4' C3' SAH sing 310 n n C4' H4' SAH sing 311 n n O4' C1' SAH sing 312 n n C3' O3' SAH sing 313 n n C3' C2' SAH sing 314 n n C3' H3' SAH sing 315 n n O3' HO3' SAH sing 316 n n C2' O2' SAH sing 317 n n C2' C1' SAH sing 318 n n C2' H2' SAH sing 319 n n O2' HO2' SAH sing 320 n n C1' N9 SAH sing 321 n n C1' H1' SAH sing 322 n n N9 C8 SAH sing 323 n y N9 C4 SAH sing 324 n y C8 N7 SAH doub 325 n y C8 H8 SAH sing 326 n n N7 C5 SAH sing 327 n y C5 C6 SAH sing 328 n y C5 C4 SAH doub 329 n y C6 N6 SAH sing 330 n n C6 N1 SAH doub 331 n y N6 HN61 SAH sing 332 n n N6 HN62 SAH sing 333 n n N1 C2 SAH sing 334 n y C2 N3 SAH doub 335 n y C2 H2 SAH sing 336 n n N3 C4 SAH sing 337 n y # _atom_sites.entry_id 8B52 _atom_sites.fract_transf_matrix[1][1] 0.018764 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010456 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009056 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 301 2 SO4 SO4 . D 3 SAH A 1 302 3 SAH SAH . E 4 GOL A 1 303 5 GOL GOL . F 2 SO4 B 1 301 1 SO4 SO4 . G 5 SAM B 1 302 4 SAM SAM . H 6 HOH A 1 401 35 HOH HOH . H 6 HOH A 2 402 82 HOH HOH . H 6 HOH A 3 403 20 HOH HOH . H 6 HOH A 4 404 42 HOH HOH . H 6 HOH A 5 405 100 HOH HOH . H 6 HOH A 6 406 56 HOH HOH . H 6 HOH A 7 407 65 HOH HOH . H 6 HOH A 8 408 18 HOH HOH . H 6 HOH A 9 409 1 HOH HOH . H 6 HOH A 10 410 45 HOH HOH . H 6 HOH A 11 411 28 HOH HOH . H 6 HOH A 12 412 37 HOH HOH . H 6 HOH A 13 413 22 HOH HOH . H 6 HOH A 14 414 107 HOH HOH . H 6 HOH A 15 415 46 HOH HOH . H 6 HOH A 16 416 131 HOH HOH . H 6 HOH A 17 417 115 HOH HOH . H 6 HOH A 18 418 21 HOH HOH . H 6 HOH A 19 419 8 HOH HOH . H 6 HOH A 20 420 11 HOH HOH . H 6 HOH A 21 421 9 HOH HOH . H 6 HOH A 22 422 47 HOH HOH . H 6 HOH A 23 423 10 HOH HOH . H 6 HOH A 24 424 7 HOH HOH . H 6 HOH A 25 425 57 HOH HOH . H 6 HOH A 26 426 13 HOH HOH . H 6 HOH A 27 427 33 HOH HOH . H 6 HOH A 28 428 53 HOH HOH . H 6 HOH A 29 429 26 HOH HOH . H 6 HOH A 30 430 2 HOH HOH . H 6 HOH A 31 431 38 HOH HOH . H 6 HOH A 32 432 50 HOH HOH . H 6 HOH A 33 433 59 HOH HOH . H 6 HOH A 34 434 32 HOH HOH . H 6 HOH A 35 435 44 HOH HOH . H 6 HOH A 36 436 25 HOH HOH . H 6 HOH A 37 437 17 HOH HOH . H 6 HOH A 38 438 24 HOH HOH . H 6 HOH A 39 439 6 HOH HOH . H 6 HOH A 40 440 64 HOH HOH . H 6 HOH A 41 441 127 HOH HOH . H 6 HOH A 42 442 62 HOH HOH . H 6 HOH A 43 443 60 HOH HOH . H 6 HOH A 44 444 61 HOH HOH . H 6 HOH A 45 445 31 HOH HOH . H 6 HOH A 46 446 29 HOH HOH . H 6 HOH A 47 447 43 HOH HOH . H 6 HOH A 48 448 137 HOH HOH . H 6 HOH A 49 449 14 HOH HOH . H 6 HOH A 50 450 58 HOH HOH . H 6 HOH A 51 451 30 HOH HOH . H 6 HOH A 52 452 136 HOH HOH . H 6 HOH A 53 453 39 HOH HOH . H 6 HOH A 54 454 63 HOH HOH . H 6 HOH A 55 455 23 HOH HOH . H 6 HOH A 56 456 48 HOH HOH . H 6 HOH A 57 457 12 HOH HOH . H 6 HOH A 58 458 52 HOH HOH . H 6 HOH A 59 459 55 HOH HOH . H 6 HOH A 60 460 19 HOH HOH . H 6 HOH A 61 461 34 HOH HOH . H 6 HOH A 62 462 15 HOH HOH . H 6 HOH A 63 463 36 HOH HOH . H 6 HOH A 64 464 133 HOH HOH . H 6 HOH A 65 465 69 HOH HOH . H 6 HOH A 66 466 40 HOH HOH . H 6 HOH A 67 467 54 HOH HOH . H 6 HOH A 68 468 95 HOH HOH . H 6 HOH A 69 469 16 HOH HOH . H 6 HOH A 70 470 41 HOH HOH . H 6 HOH A 71 471 110 HOH HOH . H 6 HOH A 72 472 5 HOH HOH . H 6 HOH A 73 473 111 HOH HOH . H 6 HOH A 74 474 66 HOH HOH . H 6 HOH A 75 475 128 HOH HOH . H 6 HOH A 76 476 132 HOH HOH . H 6 HOH A 77 477 92 HOH HOH . I 6 HOH B 1 401 119 HOH HOH . I 6 HOH B 2 402 112 HOH HOH . I 6 HOH B 3 403 99 HOH HOH . I 6 HOH B 4 404 73 HOH HOH . I 6 HOH B 5 405 139 HOH HOH . I 6 HOH B 6 406 129 HOH HOH . I 6 HOH B 7 407 78 HOH HOH . I 6 HOH B 8 408 106 HOH HOH . I 6 HOH B 9 409 138 HOH HOH . I 6 HOH B 10 410 68 HOH HOH . I 6 HOH B 11 411 94 HOH HOH . I 6 HOH B 12 412 70 HOH HOH . I 6 HOH B 13 413 117 HOH HOH . I 6 HOH B 14 414 121 HOH HOH . I 6 HOH B 15 415 101 HOH HOH . I 6 HOH B 16 416 90 HOH HOH . I 6 HOH B 17 417 124 HOH HOH . I 6 HOH B 18 418 89 HOH HOH . I 6 HOH B 19 419 98 HOH HOH . I 6 HOH B 20 420 84 HOH HOH . I 6 HOH B 21 421 79 HOH HOH . I 6 HOH B 22 422 114 HOH HOH . I 6 HOH B 23 423 125 HOH HOH . I 6 HOH B 24 424 4 HOH HOH . I 6 HOH B 25 425 97 HOH HOH . I 6 HOH B 26 426 75 HOH HOH . I 6 HOH B 27 427 113 HOH HOH . I 6 HOH B 28 428 102 HOH HOH . I 6 HOH B 29 429 77 HOH HOH . I 6 HOH B 30 430 93 HOH HOH . I 6 HOH B 31 431 67 HOH HOH . I 6 HOH B 32 432 85 HOH HOH . I 6 HOH B 33 433 96 HOH HOH . I 6 HOH B 34 434 122 HOH HOH . I 6 HOH B 35 435 104 HOH HOH . I 6 HOH B 36 436 80 HOH HOH . I 6 HOH B 37 437 51 HOH HOH . I 6 HOH B 38 438 71 HOH HOH . I 6 HOH B 39 439 108 HOH HOH . I 6 HOH B 40 440 72 HOH HOH . I 6 HOH B 41 441 120 HOH HOH . I 6 HOH B 42 442 135 HOH HOH . I 6 HOH B 43 443 81 HOH HOH . I 6 HOH B 44 444 88 HOH HOH . I 6 HOH B 45 445 76 HOH HOH . I 6 HOH B 46 446 103 HOH HOH . I 6 HOH B 47 447 105 HOH HOH . I 6 HOH B 48 448 83 HOH HOH . I 6 HOH B 49 449 87 HOH HOH . I 6 HOH B 50 450 91 HOH HOH . I 6 HOH B 51 451 134 HOH HOH . I 6 HOH B 52 452 116 HOH HOH . I 6 HOH B 53 453 3 HOH HOH . I 6 HOH B 54 454 109 HOH HOH . I 6 HOH B 55 455 86 HOH HOH . I 6 HOH B 56 456 126 HOH HOH . I 6 HOH B 57 457 74 HOH HOH . I 6 HOH B 58 458 130 HOH HOH . I 6 HOH B 59 459 49 HOH HOH . I 6 HOH B 60 460 118 HOH HOH . I 6 HOH B 61 461 27 HOH HOH . I 6 HOH B 62 462 123 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . D 3 11.377 -1.875 22.179 1 20 ? N SAH 302 A 1 HETATM 2 C CA SAH . . . D 3 11.384 -1.897 23.607 1 20 ? CA SAH 302 A 1 HETATM 3 C CB SAH . . . D 3 12.128 -3.115 24.163 1 20 ? CB SAH 302 A 1 HETATM 4 C CG SAH . . . D 3 11.34 -4.421 23.746 1 20 ? CG SAH 302 A 1 HETATM 5 S SD SAH . . . D 3 10.784 -5.329 25.239 1 20 ? SD SAH 302 A 1 HETATM 6 C C SAH . . . D 3 12.07 -0.66 24.159 1 20 ? C SAH 302 A 1 HETATM 7 O O SAH . . . D 3 11.912 -0.322 25.355 1 20 ? O SAH 302 A 1 HETATM 8 O OXT SAH . . . D 3 12.795 0.039 23.369 1 20 ? OXT SAH 302 A 1 HETATM 9 C C5' SAH . . . D 3 9.77 -6.681 24.588 1 20 ? C5' SAH 302 A 1 HETATM 10 C C4' SAH . . . D 3 8.347 -6.617 25.24 1 20 ? C4' SAH 302 A 1 HETATM 11 O O4' SAH . . . D 3 7.558 -7.414 24.605 1 20 ? O4' SAH 302 A 1 HETATM 12 C C3' SAH . . . D 3 8.432 -7.166 26.677 1 20 ? C3' SAH 302 A 1 HETATM 13 O O3' SAH . . . D 3 8.306 -6.182 27.568 1 20 ? O3' SAH 302 A 1 HETATM 14 C C2' SAH . . . D 3 7.253 -8.154 26.758 1 20 ? C2' SAH 302 A 1 HETATM 15 O O2' SAH . . . D 3 6.516 -7.922 28.037 1 20 ? O2' SAH 302 A 1 HETATM 16 C C1' SAH . . . D 3 6.516 -7.9 25.719 1 20 ? C1' SAH 302 A 1 HETATM 17 N N9 SAH . . . D 3 5.89 -9.144 25.285 1 20 ? N9 SAH 302 A 1 HETATM 18 C C8 SAH . . . D 3 6.301 -10.412 25.28 1 20 ? C8 SAH 302 A 1 HETATM 19 N N7 SAH . . . D 3 5.318 -11.169 24.79 1 20 ? N7 SAH 302 A 1 HETATM 20 C C5 SAH . . . D 3 4.3 -10.368 24.497 1 20 ? C5 SAH 302 A 1 HETATM 21 C C6 SAH . . . D 3 3.066 -10.65 23.972 1 20 ? C6 SAH 302 A 1 HETATM 22 N N6 SAH . . . D 3 2.437 -11.86 23.565 1 20 ? N6 SAH 302 A 1 HETATM 23 N N1 SAH . . . D 3 2.2 -9.684 23.765 1 20 ? N1 SAH 302 A 1 HETATM 24 C C2 SAH . . . D 3 2.549 -8.397 24.073 1 20 ? C2 SAH 302 A 1 HETATM 25 N N3 SAH . . . D 3 3.761 -8.116 24.586 1 20 ? N3 SAH 302 A 1 HETATM 26 C C4 SAH . . . D 3 4.64 -9.108 24.797 1 20 ? C4 SAH 302 A 1 # _model_server_stats.io_time_ms 75 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 26 #