data_8B52 # _model_server_result.job_id xwxHe5UqgQOa316bopT4fw _model_server_result.datetime_utc '2024-10-19 10:27:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8b52 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":302}' # _entry.id 8B52 # _exptl.entry_id 8B52 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.437 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYLMETHIONINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8B52 _cell.length_a 53.294 _cell.length_b 95.643 _cell.length_c 110.424 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8B52 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,H 1 1 B,F,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H22 N6 O5 S' _chem_comp.formula_weight 398.437 _chem_comp.id SAM _chem_comp.mon_nstd_flag . _chem_comp.name S-ADENOSYLMETHIONINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAM sing 338 n n N HN1 SAM sing 339 n n N HN2 SAM sing 340 n n CA C SAM sing 341 n n CA CB SAM sing 342 n n CA HA SAM sing 343 n n C O SAM doub 344 n n C OXT SAM sing 345 n n CB CG SAM sing 346 n n CB HB1 SAM sing 347 n n CB HB2 SAM sing 348 n n CG SD SAM sing 349 n n CG HG1 SAM sing 350 n n CG HG2 SAM sing 351 n n SD CE SAM sing 352 n n SD C5' SAM sing 353 n n CE HE1 SAM sing 354 n n CE HE2 SAM sing 355 n n CE HE3 SAM sing 356 n n C5' C4' SAM sing 357 n n C5' "H5'1" SAM sing 358 n n C5' "H5'2" SAM sing 359 n n C4' O4' SAM sing 360 n n C4' C3' SAM sing 361 n n C4' H4' SAM sing 362 n n O4' C1' SAM sing 363 n n C3' O3' SAM sing 364 n n C3' C2' SAM sing 365 n n C3' H3' SAM sing 366 n n O3' HO3' SAM sing 367 n n C2' O2' SAM sing 368 n n C2' C1' SAM sing 369 n n C2' H2' SAM sing 370 n n O2' HO2' SAM sing 371 n n C1' N9 SAM sing 372 n n C1' H1' SAM sing 373 n n N9 C8 SAM sing 374 n y N9 C4 SAM sing 375 n y C8 N7 SAM doub 376 n y C8 H8 SAM sing 377 n n N7 C5 SAM sing 378 n y C5 C6 SAM sing 379 n y C5 C4 SAM doub 380 n y C6 N6 SAM sing 381 n n C6 N1 SAM doub 382 n y N6 HN61 SAM sing 383 n n N6 HN62 SAM sing 384 n n N1 C2 SAM sing 385 n y C2 N3 SAM doub 386 n y C2 H2 SAM sing 387 n n N3 C4 SAM sing 388 n y # _atom_sites.entry_id 8B52 _atom_sites.fract_transf_matrix[1][1] 0.018764 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010456 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009056 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 301 2 SO4 SO4 . D 3 SAH A 1 302 3 SAH SAH . E 4 GOL A 1 303 5 GOL GOL . F 2 SO4 B 1 301 1 SO4 SO4 . G 5 SAM B 1 302 4 SAM SAM . H 6 HOH A 1 401 35 HOH HOH . H 6 HOH A 2 402 82 HOH HOH . H 6 HOH A 3 403 20 HOH HOH . H 6 HOH A 4 404 42 HOH HOH . H 6 HOH A 5 405 100 HOH HOH . H 6 HOH A 6 406 56 HOH HOH . H 6 HOH A 7 407 65 HOH HOH . H 6 HOH A 8 408 18 HOH HOH . H 6 HOH A 9 409 1 HOH HOH . H 6 HOH A 10 410 45 HOH HOH . H 6 HOH A 11 411 28 HOH HOH . H 6 HOH A 12 412 37 HOH HOH . H 6 HOH A 13 413 22 HOH HOH . H 6 HOH A 14 414 107 HOH HOH . H 6 HOH A 15 415 46 HOH HOH . H 6 HOH A 16 416 131 HOH HOH . H 6 HOH A 17 417 115 HOH HOH . H 6 HOH A 18 418 21 HOH HOH . H 6 HOH A 19 419 8 HOH HOH . H 6 HOH A 20 420 11 HOH HOH . H 6 HOH A 21 421 9 HOH HOH . H 6 HOH A 22 422 47 HOH HOH . H 6 HOH A 23 423 10 HOH HOH . H 6 HOH A 24 424 7 HOH HOH . H 6 HOH A 25 425 57 HOH HOH . H 6 HOH A 26 426 13 HOH HOH . H 6 HOH A 27 427 33 HOH HOH . H 6 HOH A 28 428 53 HOH HOH . H 6 HOH A 29 429 26 HOH HOH . H 6 HOH A 30 430 2 HOH HOH . H 6 HOH A 31 431 38 HOH HOH . H 6 HOH A 32 432 50 HOH HOH . H 6 HOH A 33 433 59 HOH HOH . H 6 HOH A 34 434 32 HOH HOH . H 6 HOH A 35 435 44 HOH HOH . H 6 HOH A 36 436 25 HOH HOH . H 6 HOH A 37 437 17 HOH HOH . H 6 HOH A 38 438 24 HOH HOH . H 6 HOH A 39 439 6 HOH HOH . H 6 HOH A 40 440 64 HOH HOH . H 6 HOH A 41 441 127 HOH HOH . H 6 HOH A 42 442 62 HOH HOH . H 6 HOH A 43 443 60 HOH HOH . H 6 HOH A 44 444 61 HOH HOH . H 6 HOH A 45 445 31 HOH HOH . H 6 HOH A 46 446 29 HOH HOH . H 6 HOH A 47 447 43 HOH HOH . H 6 HOH A 48 448 137 HOH HOH . H 6 HOH A 49 449 14 HOH HOH . H 6 HOH A 50 450 58 HOH HOH . H 6 HOH A 51 451 30 HOH HOH . H 6 HOH A 52 452 136 HOH HOH . H 6 HOH A 53 453 39 HOH HOH . H 6 HOH A 54 454 63 HOH HOH . H 6 HOH A 55 455 23 HOH HOH . H 6 HOH A 56 456 48 HOH HOH . H 6 HOH A 57 457 12 HOH HOH . H 6 HOH A 58 458 52 HOH HOH . H 6 HOH A 59 459 55 HOH HOH . H 6 HOH A 60 460 19 HOH HOH . H 6 HOH A 61 461 34 HOH HOH . H 6 HOH A 62 462 15 HOH HOH . H 6 HOH A 63 463 36 HOH HOH . H 6 HOH A 64 464 133 HOH HOH . H 6 HOH A 65 465 69 HOH HOH . H 6 HOH A 66 466 40 HOH HOH . H 6 HOH A 67 467 54 HOH HOH . H 6 HOH A 68 468 95 HOH HOH . H 6 HOH A 69 469 16 HOH HOH . H 6 HOH A 70 470 41 HOH HOH . H 6 HOH A 71 471 110 HOH HOH . H 6 HOH A 72 472 5 HOH HOH . H 6 HOH A 73 473 111 HOH HOH . H 6 HOH A 74 474 66 HOH HOH . H 6 HOH A 75 475 128 HOH HOH . H 6 HOH A 76 476 132 HOH HOH . H 6 HOH A 77 477 92 HOH HOH . I 6 HOH B 1 401 119 HOH HOH . I 6 HOH B 2 402 112 HOH HOH . I 6 HOH B 3 403 99 HOH HOH . I 6 HOH B 4 404 73 HOH HOH . I 6 HOH B 5 405 139 HOH HOH . I 6 HOH B 6 406 129 HOH HOH . I 6 HOH B 7 407 78 HOH HOH . I 6 HOH B 8 408 106 HOH HOH . I 6 HOH B 9 409 138 HOH HOH . I 6 HOH B 10 410 68 HOH HOH . I 6 HOH B 11 411 94 HOH HOH . I 6 HOH B 12 412 70 HOH HOH . I 6 HOH B 13 413 117 HOH HOH . I 6 HOH B 14 414 121 HOH HOH . I 6 HOH B 15 415 101 HOH HOH . I 6 HOH B 16 416 90 HOH HOH . I 6 HOH B 17 417 124 HOH HOH . I 6 HOH B 18 418 89 HOH HOH . I 6 HOH B 19 419 98 HOH HOH . I 6 HOH B 20 420 84 HOH HOH . I 6 HOH B 21 421 79 HOH HOH . I 6 HOH B 22 422 114 HOH HOH . I 6 HOH B 23 423 125 HOH HOH . I 6 HOH B 24 424 4 HOH HOH . I 6 HOH B 25 425 97 HOH HOH . I 6 HOH B 26 426 75 HOH HOH . I 6 HOH B 27 427 113 HOH HOH . I 6 HOH B 28 428 102 HOH HOH . I 6 HOH B 29 429 77 HOH HOH . I 6 HOH B 30 430 93 HOH HOH . I 6 HOH B 31 431 67 HOH HOH . I 6 HOH B 32 432 85 HOH HOH . I 6 HOH B 33 433 96 HOH HOH . I 6 HOH B 34 434 122 HOH HOH . I 6 HOH B 35 435 104 HOH HOH . I 6 HOH B 36 436 80 HOH HOH . I 6 HOH B 37 437 51 HOH HOH . I 6 HOH B 38 438 71 HOH HOH . I 6 HOH B 39 439 108 HOH HOH . I 6 HOH B 40 440 72 HOH HOH . I 6 HOH B 41 441 120 HOH HOH . I 6 HOH B 42 442 135 HOH HOH . I 6 HOH B 43 443 81 HOH HOH . I 6 HOH B 44 444 88 HOH HOH . I 6 HOH B 45 445 76 HOH HOH . I 6 HOH B 46 446 103 HOH HOH . I 6 HOH B 47 447 105 HOH HOH . I 6 HOH B 48 448 83 HOH HOH . I 6 HOH B 49 449 87 HOH HOH . I 6 HOH B 50 450 91 HOH HOH . I 6 HOH B 51 451 134 HOH HOH . I 6 HOH B 52 452 116 HOH HOH . I 6 HOH B 53 453 3 HOH HOH . I 6 HOH B 54 454 109 HOH HOH . I 6 HOH B 55 455 86 HOH HOH . I 6 HOH B 56 456 126 HOH HOH . I 6 HOH B 57 457 74 HOH HOH . I 6 HOH B 58 458 130 HOH HOH . I 6 HOH B 59 459 49 HOH HOH . I 6 HOH B 60 460 118 HOH HOH . I 6 HOH B 61 461 27 HOH HOH . I 6 HOH B 62 462 123 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAM . . . G 5 41.626 -1.86 44.694 1 23.77 ? N SAM 302 B 1 HETATM 2 C CA SAM . . . G 5 41.758 -1.718 43.281 1 23.69 ? CA SAM 302 B 1 HETATM 3 C C SAM . . . G 5 41.065 -0.435 42.825 1 23.74 ? C SAM 302 B 1 HETATM 4 O O SAM . . . G 5 40.358 0.221 43.581 1 23.84 ? O SAM 302 B 1 HETATM 5 O OXT SAM . . . G 5 41.251 -0.062 41.67 1 23.7 ? OXT SAM 302 B 1 HETATM 6 C CB SAM . . . G 5 41.196 -2.924 42.521 1 23.71 ? CB SAM 302 B 1 HETATM 7 C CG SAM . . . G 5 41.907 -4.195 42.972 1 23.73 ? CG SAM 302 B 1 HETATM 8 S SD SAM . . . G 5 42.412 -5.125 41.609 1 23.7 ? SD SAM 302 B 1 HETATM 9 C CE SAM . . . G 5 41.052 -5.707 40.725 1 23.82 ? CE SAM 302 B 1 HETATM 10 C C5' SAM . . . G 5 43.304 -6.456 42.151 1 23.75 ? C5' SAM 302 B 1 HETATM 11 C C4' SAM . . . G 5 44.677 -6.476 41.426 1 23.68 ? C4' SAM 302 B 1 HETATM 12 O O4' SAM . . . G 5 45.64 -7.376 42.211 1 23.76 ? O4' SAM 302 B 1 HETATM 13 C C3' SAM . . . G 5 44.586 -7.032 40.28 1 23.71 ? C3' SAM 302 B 1 HETATM 14 O O3' SAM . . . G 5 44.703 -6.034 39.236 1 23.61 ? O3' SAM 302 B 1 HETATM 15 C C2' SAM . . . G 5 45.86 -8.076 40.166 1 23.78 ? C2' SAM 302 B 1 HETATM 16 O O2' SAM . . . G 5 46.448 -7.954 38.849 1 23.74 ? O2' SAM 302 B 1 HETATM 17 C C1' SAM . . . G 5 46.636 -7.64 41.07 1 23.75 ? C1' SAM 302 B 1 HETATM 18 N N9 SAM . . . G 5 47.672 -8.573 41.569 1 23.87 ? N9 SAM 302 B 1 HETATM 19 C C8 SAM . . . G 5 47.003 -9.723 41.494 1 24 ? C8 SAM 302 B 1 HETATM 20 N N7 SAM . . . G 5 47.807 -10.693 41.916 1 24.15 ? N7 SAM 302 B 1 HETATM 21 C C5 SAM . . . G 5 48.962 -10.131 42.262 1 24.11 ? C5 SAM 302 B 1 HETATM 22 C C6 SAM . . . G 5 50.128 -10.645 42.758 1 24.24 ? C6 SAM 302 B 1 HETATM 23 N N6 SAM . . . G 5 50.656 -11.932 43.125 1 24.48 ? N6 SAM 302 B 1 HETATM 24 N N1 SAM . . . G 5 51.136 -9.842 43.015 1 24.19 ? N1 SAM 302 B 1 HETATM 25 C C2 SAM . . . G 5 51.03 -8.519 42.792 1 24.02 ? C2 SAM 302 B 1 HETATM 26 N N3 SAM . . . G 5 49.891 -8.007 42.308 1 23.89 ? N3 SAM 302 B 1 HETATM 27 C C4 SAM . . . G 5 48.871 -8.824 42.048 1 23.93 ? C4 SAM 302 B 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 27 #